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Large-scale plant protein subcellular location prediction.
- Published in:
- Journal of Cellular Biochemistry, 2007, v. 100, n. 3, p. 665, doi. 10.1002/jcb.21096
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- Article
Predicting protein subcellular location by fusing multiple classifiers.
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- Journal of Cellular Biochemistry, 2006, v. 99, n. 2, p. 517, doi. 10.1002/jcb.20879
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- Publication type:
- Article
Recent Deep Learning Methodology Development for RNA–RNA Interaction Prediction.
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- Symmetry (20738994), 2022, v. 14, n. 7, p. N.PAG, doi. 10.3390/sym14071302
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- Article
Nuc-PLoc: a new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM.
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- PEDS: Protein Engineering, Design & Selection, 2007, v. 20, n. 11, p. 561, doi. 10.1093/protein/gzm057
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- Publication type:
- Article
Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins.
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- PEDS: Protein Engineering, Design & Selection, 2007, v. 20, n. 1, p. 39, doi. 10.1093/protein/gzl053
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- Article
BindWeb: A web server for ligand binding residue and pocket prediction from protein structures.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 12, p. 1, doi. 10.1002/pro.4462
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- Article
Protein Structure Refinement Using Multi-Objective Particle Swarm Optimization with Decomposition Strategy.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4408, doi. 10.3390/ijms22094408
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- Article
Enhancing protein-vitamin binding residues prediction by multiple heterogeneous subspace SVMs ensemble.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-297
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- Article
Predicting protein-ATP binding sites from primary sequence through fusing bi-profile sampling of multi-view features.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 118, doi. 10.1186/1471-2105-13-118
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- Publication type:
- Article
Many Local Pattern Texture Features: Which Is Better for Image-Based Multilabel Human Protein Subcellular Localization Classification?
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- Scientific World Journal, 2014, p. 1, doi. 10.1155/2014/429049
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- Article
Fast protein structure comparison through effective representation learning with contrastive graph neural networks.
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- PLoS Computational Biology, 2022, v. 18, n. 3, p. 1, doi. 10.1371/journal.pcbi.1009986
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- Publication type:
- Article
Understanding the mechanisms of halotolerance in members of Pontixanthobacter and Allopontixanthobacter by comparative genome analysis.
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- Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1111472
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- Publication type:
- Article
IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2931-8
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- Publication type:
- Article
RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach.
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- 2017
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- Publication type:
- Product Review
High-accuracy protein model quality assessment using attention graph neural networks.
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- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbac614
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- Publication type:
- Article
Leveraging scaffold information to predict protein–ligand binding affinity with an empirical graph neural network.
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- Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac603
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- Publication type:
- Article
MDGF-MCEC: a multi-view dual attention embedding model with cooperative ensemble learning for CircRNA-disease association prediction.
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- Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac289
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- Publication type:
- Article
Accurate flexible refinement for atomic-level protein structure using cryo-EM density maps and deep learning.
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- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbac026
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- Publication type:
- Article
SIFLoc: a self-supervised pre-training method for enhancing the recognition of protein subcellular localization in immunofluorescence microscopic images.
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- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab605
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- Publication type:
- Article
Learning protein subcellular localization multi-view patterns from heterogeneous data of imaging, sequence and networks.
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- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab539
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- Publication type:
- Article
circRNA-binding protein site prediction based on multi-view deep learning, subspace learning and multi-view classifier.
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- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab394
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- Publication type:
- Article
Recognizing binding sites of poorly characterized RNA-binding proteins on circular RNAs using attention Siamese network.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab279
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- Publication type:
- Article
RNA-binding protein recognition based on multi-view deep feature and multi-label learning.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa174
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- Article
AdipoCount: A New Software for Automatic Adipocyte Counting.
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- Frontiers in Physiology, 2018, p. 1, doi. 10.3389/fphys.2018.00085
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- Article
RBPsuite: RNA-protein binding sites prediction suite based on deep learning.
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- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-07291-6
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- Publication type:
- Article
Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells.
- Published in:
- Biopolymers, 2007, v. 85, n. 3, p. 233, doi. 10.1002/bip.20640
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- Article
MINDG: a drug–target interaction prediction method based on an integrated learning algorithm.
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- Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae147
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- Article
MLNGCF: circRNA–disease associations prediction with multilayer attention neural graph-based collaborative filtering.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad499
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- Publication type:
- Article
De novo drug design by iterative multiobjective deep reinforcement learning with graph-based molecular quality assessment.
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- Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad157
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- Publication type:
- Article
GraphLoc: a graph neural network model for predicting protein subcellular localization from immunohistochemistry images.
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- Bioinformatics, 2022, v. 38, n. 21, p. 4941, doi. 10.1093/bioinformatics/btac634
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- Publication type:
- Article
CoCoPRED: coiled-coil protein structural feature prediction from amino acid sequence using deep neural networks.
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- Bioinformatics, 2022, v. 38, n. 3, p. 720, doi. 10.1093/bioinformatics/btab744
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- Article
Accurate inference of gene regulatory interactions from spatial gene expression with deep contrastive learning.
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- Bioinformatics, 2022, v. 38, n. 3, p. 746, doi. 10.1093/bioinformatics/btab718
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- Publication type:
- Article
lncLocator 2.0: a cell-line-specific subcellular localization predictor for long non-coding RNAs with interpretable deep learning.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2308, doi. 10.1093/bioinformatics/btab127
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- Article
ToxDL: deep learning using primary structure and domain embeddings for assessing protein toxicity.
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- Bioinformatics, 2020, v. 36, n. 21, p. 5159, doi. 10.1093/bioinformatics/btaa656
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- Article
Protein–ligand binding residue prediction enhancement through hybrid deep heterogeneous learning of sequence and structure data.
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- Bioinformatics, 2020, v. 36, n. 10, p. 3018, doi. 10.1093/bioinformatics/btaa110
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- Article
ImPLoc: a multi-instance deep learning model for the prediction of protein subcellular localization based on immunohistochemistry images.
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- Bioinformatics, 2020, v. 36, n. 7, p. 2244, doi. 10.1093/bioinformatics/btz909
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- Article
Learning complex subcellular distribution patterns of proteins via analysis of immunohistochemistry images.
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- Bioinformatics, 2020, v. 36, n. 6, p. 1908, doi. 10.1093/bioinformatics/btz844
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- Publication type:
- Article
Artificial intelligence-based multi-objective optimization protocol for protein structure refinement.
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- Bioinformatics, 2020, v. 36, n. 2, p. 437, doi. 10.1093/bioinformatics/btz544
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- Publication type:
- Article
AnnoFly: annotating Drosophila embryonic images based on an attention-enhanced RNN model.
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- Bioinformatics, 2019, v. 35, n. 16, p. 2834, doi. 10.1093/bioinformatics/bty1064
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- Article
Predicting RNA–protein binding sites and motifs through combining local and global deep convolutional neural networks.
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- Bioinformatics, 2018, v. 34, n. 20, p. 3427, doi. 10.1093/bioinformatics/bty364
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- Publication type:
- Article
MiRGOFS: a GO-based functional similarity measurement for miRNAs, with applications to the prediction of miRNA subcellular localization and miRNA–disease association.
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- Bioinformatics, 2018, v. 34, n. 20, p. 3547, doi. 10.1093/bioinformatics/bty343
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- Publication type:
- Article
The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifier.
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- Bioinformatics, 2018, v. 34, n. 13, p. 2185, doi. 10.1093/bioinformatics/bty085
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- Article
Adaptive Firefly Algorithm: Parameter Analysis and its Application.
- Published in:
- PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0112634
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- Publication type:
- Article
A New Supervised Over-Sampling Algorithm with Application to Protein-Nucleotide Binding Residue Prediction.
- Published in:
- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107676
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- Publication type:
- Article
Revealing the Hidden Relationship by Sparse Modules in Complex Networks with a Large-Scale Analysis.
- Published in:
- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0066020
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- Publication type:
- Article
BinTree Seeking: A Novel Approach to Mine Both Bi-Sparse and Cohesive Modules in Protein Interaction Networks.
- Published in:
- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027646
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- Publication type:
- Article
Plant-mPLoc: A Top-Down Strategy to Augment the Power for Predicting Plant Protein Subcellular Localization.
- Published in:
- PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011335
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- Publication type:
- Article
A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0.
- Published in:
- PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0009931
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- Publication type:
- Article
Protein folds recognized by an intelligent predictor based-on evolutionary and structural information.
- Published in:
- Journal of Computational Chemistry, 2016, v. 37, n. 4, p. 426, doi. 10.1002/jcc.24232
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- Publication type:
- Article
TargetATPsite: A template-free method for ATP-binding sites prediction with residue evolution image sparse representation and classifier ensemble.
- Published in:
- Journal of Computational Chemistry, 2013, v. 34, n. 11, p. 974, doi. 10.1002/jcc.23219
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- Publication type:
- Article