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Analysis of the draft genome of Pseudomonas fluorescens ATCC17400 indicates a capacity to take up iron from a wide range of sources, including different exogenous pyoverdines.
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- BioMetals, 2014, v. 27, n. 4, p. 633, doi. 10.1007/s10534-014-9734-7
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- Article
A combinatorial approach to the structure elucidation of a pyoverdine siderophore produced by a Pseudomonas putida isolate and the use of pyoverdine as a taxonomic marker for typing P. putida subspecies.
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- BioMetals, 2013, v. 26, n. 4, p. 561, doi. 10.1007/s10534-013-9653-z
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- Article
Meta-analysis of the Parkinson's disease gut microbiome suggests alterations linked to intestinal inflammation.
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- NPJ Parkinson's Disease, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41531-021-00156-z
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- Article
Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment.
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- Environmental Microbiology Reports, 2019, v. 11, n. 4, p. 487, doi. 10.1111/1758-2229.12684
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- Article
Microbiota Dysbiosis and Gut Barrier Dysfunction Associated with Non-Alcoholic Fatty Liver Disease Are Modulated by a Specific Metabolic Cofactors' Combination.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 22, p. 13675, doi. 10.3390/ijms232213675
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Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.61968
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Global regulation of gene expression by OxyR in an important human opportunistic pathogen.
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- Nucleic Acids Research, 2012, v. 40, n. 10, p. 4320, doi. 10.1093/nar/gks017
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- Article
Structure and function of the soil microbiome underlying N<sub>2</sub>O emissions from global wetlands.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29161-3
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- Article
Exploring Endotypes in Chronic Rhinosinusitis (ExpRess): Protocol for a cohort study.
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- PLoS ONE, 2023, v. 18, n. 8, p. 1, doi. 10.1371/journal.pone.0289407
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Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing.
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- Microbial Biotechnology, 2024, v. 17, n. 1, p. 1, doi. 10.1111/1751-7915.14396
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- Article
The chemical interactome space between the human host and the genetically defined gut metabotypes.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 4, p. 730, doi. 10.1038/ismej.2012.141
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- Article
The production of ( R)-2-hydroxy-1-phenyl-propan-1-one derivatives by benzaldehyde lyase from Pseudomonas fluorescens in a continuously operated membrane reactor.
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- Biotechnology & Bioengineering, 2007, v. 96, n. 5, p. 835, doi. 10.1002/bit.21189
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- Article
mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes.
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- Bioinformatics, 2022, v. 38, n. 1, p. 270, doi. 10.1093/bioinformatics/btab465
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- Article
The skin microbiome of caspase-14-deficient mice shows mild dysbiosis.
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- Experimental Dermatology, 2014, v. 23, n. 8, p. 561, doi. 10.1111/exd.12458
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- Article
Draft Genome Sequence Analysis of a Pseudomonas putida W15Oct28 Strain with Antagonistic Activity to Gram-Positive and Pseudomonas sp. Pathogens.
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- PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0110038
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- Article
adhesiomeR: a tool for Escherichia coli adhesin classification and analysis.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10525-6
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Subspecies in the global human gut microbiome.
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- Molecular Systems Biology, 2017, v. 13, n. 12, p. 1, doi. 10.15252/msb.20177589
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- Article
Origin, Spread and Demography of the Mycobacterium tuberculosis Complex.
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- PLoS Pathogens, 2008, v. 4, n. 9, p. 1, doi. 10.1371/journal.ppat.1000160
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- Article
LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis.
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- Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01365-1
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- Article
Host genetic variation strongly influences the microbiome structure and function in fungal fruiting‐bodies.
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- Environmental Microbiology, 2018, v. 20, n. 5, p. 1641, doi. 10.1111/1462-2920.14069
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- Article
Toxic Cyanobacteria in Svalbard: Chemical Diversity of Microcystins Detected Using a Liquid Chromatography Mass Spectrometry Precursor Ion Screening Method.
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- Toxins, 2018, v. 10, n. 4, p. 147, doi. 10.3390/toxins10040147
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- Article
Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice.
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- Genome Biology, 2013, v. 14, n. 1, p. 1, doi. 10.1186/gb-2013-14-1-r4
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- Article
Stable Electroenzymatic Processes by Catalyst Separation.
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- Chemistry - A European Journal, 2009, v. 15, n. 20, p. 4998, doi. 10.1002/chem.200900219
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- Article
Plant nutrient‐acquisition strategies drive topsoil microbiome structure and function.
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- New Phytologist, 2020, v. 227, n. 4, p. 1189, doi. 10.1111/nph.16598
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- Article
Gut microbiota dysbiosis in Parkinson disease: A systematic review and pooled analysis.
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- European Journal of Neurology, 2023, v. 30, n. 11, p. 3581, doi. 10.1111/ene.15671
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- Article
Richness of human gut microbiome correlates with metabolic markers.
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- Nature, 2013, v. 500, n. 7464, p. 541, doi. 10.1038/nature12506
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Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.10941
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Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease.
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- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.784397
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- Article
Benchmark of Data Processing Methods and Machine Learning Models for Gut Microbiome-Based Diagnosis of Inflammatory Bowel Disease.
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- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.784397
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- Article
Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes.
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- Nucleic Acids Research, 2022, v. 50, n. 6, p. 3155, doi. 10.1093/nar/gkac163
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- Article
Precision enzyme discovery through targeted mining of metagenomic data.
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- Natural Products & Bioprospecting, 2024, v. 14, n. 1, p. 1, doi. 10.1007/s13659-023-00426-8
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- Article
A computational framework to integrate high-throughput ‘-omics’ datasets for the identification of potential mechanistic links.
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- Nature Protocols, 2018, v. 13, n. 12, p. 2781, doi. 10.1038/s41596-018-0064-z
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- Article
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.
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- Molecular Ecology Resources, 2024, v. 24, n. 5, p. 1, doi. 10.1111/1755-0998.13847
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- Article
A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens).
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- BMC Genomics, 2012, v. 13, n. 1, p. 514, doi. 10.1186/1471-2164-13-514
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Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case.
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- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-325
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Unresolved orthology and peculiar coding sequence properties of lamprey genes: the KCNA gene family as test case.
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- BMC Genomics, 2011, v. 12, n. 1, p. 325, doi. 10.1186/1471-2164-12-325
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- Article
RTK: efficient rarefaction analysis of large datasets.
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- Bioinformatics, 2017, v. 33, n. 16, p. 2594, doi. 10.1093/bioinformatics/btx206
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Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson's disease individuals.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01012-1
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- Article
Gut microbiota composition is associated with environmental landscape in honey bees.
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- Ecology & Evolution (20457758), 2018, v. 8, n. 1, p. 441, doi. 10.1002/ece3.3597
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Metagenomic assessment of the global diversity and distribution of bacteria and fungi.
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- Environmental Microbiology, 2021, v. 23, n. 1, p. 316, doi. 10.1111/1462-2920.15314
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- Article