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IntAct Database for Accessing IMEx's Contextual Metadata of Molecular Interactions.
- Published in:
- Current Protocols, 2024, v. 4, n. 10, p. 1, doi. 10.1002/cpz1.70018
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- Article
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data.
- Published in:
- PLoS Biology, 2017, v. 15, n. 6, p. 1, doi. 10.1371/journal.pbio.2001414
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- Article
Organizational principles of the Reactome human BioPAX model using graph theory methods.
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- Journal of Complex Networks, 2016, v. 4, n. 4, p. 604, doi. 10.1093/comnet/cnw003
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- Article
BioModels linked dataset
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 91, doi. 10.1186/s12918-014-0091-5
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- Publication type:
- Article
Path2Models: large-scale generation of computational models from biochemical pathway maps.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 3, doi. 10.1186/1752-0509-7-116
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- Publication type:
- Article
Pride Wizard: generation of standards compliant quantitative proteomics data.
- Published in:
- 2007
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- Publication type:
- Abstract
Reactome pathway analysis: a high-performance in-memory approach.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1559-2
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- Publication type:
- Article
Author Correction: COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
- Published in:
- 2020
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- Publication type:
- Correction Notice
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0477-8
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- Article
Wikidata as a knowledge graph for the life sciences.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.52614
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- Publication type:
- Article
iProX: an integrated proteome resource.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D1211, doi. 10.1093/nar/gky869
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- Publication type:
- Article
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. D1, p. D550, doi. 10.1093/nar/gky1001
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- Publication type:
- Article
AAgAtlas 1.0: a human autoantigen database.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D769, doi. 10.1093/nar/gkw946
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- Publication type:
- Article
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D1100, doi. 10.1093/nar/gkw936
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- Publication type:
- Article
2016 update of the PRIDE database and its related tools.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 1, p. D447, doi. 10.1093/nar/gkv1145
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- Publication type:
- Article
Introducing the PRIDE Archive RESTful web services.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W599, doi. 10.1093/nar/gkv382
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- Publication type:
- Article
BioModels: ten-year anniversary.
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- Nucleic Acids Research, 2015, v. 43, n. D1, p. D542, doi. 10.1093/nar/gku1181
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- Publication type:
- Article
The complex portal - an encyclopaedia of macromolecular complexes.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. D1, p. D479, doi. 10.1093/nar/gku975
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- Publication type:
- Article
A new reference implementation of the PSICQUIC web service.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. W601, doi. 10.1093/nar/gkt392
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- Publication type:
- Article
The Proteomics Identifications (PRIDE) database and associated tools: status in 2013.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D1063, doi. 10.1093/nar/gks1262
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- Publication type:
- Article
The EBI enzyme portal.
- Published in:
- Nucleic Acids Research, 2013, v. 41, p. D773, doi. 10.1093/nar/gks1112
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- Publication type:
- Article
Improvements in the protein identifier cross-reference service.
- Published in:
- Nucleic Acids Research, 2012, v. 40, p. W276, doi. 10.1093/nar/gks338
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- Publication type:
- Article
Reactome: a database of reactions, pathways and biological processes.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D691, doi. 10.1093/nar/gkq1018
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- Publication type:
- Article
The Ontology Lookup Service: bigger and better.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W155, doi. 10.1093/nar/gkq331
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- Publication type:
- Article
R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W78, doi. 10.1093/nar/gkq482
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- Publication type:
- Article
The Proteomics Identifications database: 2010 update.
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- Nucleic Acids Research, 2010, v. 38, p. D736, doi. 10.1093/nar/gkp964
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- Publication type:
- Article
Reactome knowledgebase of human biological pathways and processes.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D619, doi. 10.1093/nar/gkn863
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- Publication type:
- Article
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W372, doi. 10.1093/nar/gkn252
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- Publication type:
- Article
ISPIDER Central: an integrated database web-server for proteomics.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W485, doi. 10.1093/nar/gkn196
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- Publication type:
- Article
PRIDE: new developments and new datasets.
- Published in:
- Nucleic Acids Research, 2008, v. 36, p. D878
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- Publication type:
- Article
An open invitation to the Understudied Proteins Initiative.
- Published in:
- 2022
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- Publication type:
- Letter
PRIDE Inspector: a tool to visualize and validate MS proteomics data.
- Published in:
- 2012
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- Publication type:
- Letter
The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.
- Published in:
- Nature Biotechnology, 2007, v. 25, n. 10, p. 1127, doi. 10.1038/nbt1347
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- Publication type:
- Article
A common open representation of mass spectrometry data and its application to proteomics research.
- Published in:
- Nature Biotechnology, 2004, v. 22, n. 11, p. 1459, doi. 10.1038/nbt1031
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- Publication type:
- Article
PRIDE Cluster: building a consensus of proteomics data.
- Published in:
- Nature Methods, 2013, v. 10, n. 2, p. 95, doi. 10.1038/nmeth.2343
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- Publication type:
- Article
Recurated protein interaction datasets.
- Published in:
- 2009
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- Publication type:
- Letter
Corrigendum: ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome.
- Published in:
- 2007
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- Publication type:
- Correction Notice
ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome.
- Published in:
- Nature Methods, 2007, v. 4, n. 1, p. 13, doi. 10.1038/nmeth0107-13
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- Publication type:
- Article
A public repository for mass spectrometry imaging data.
- Published in:
- Analytical & Bioanalytical Chemistry, 2015, v. 407, n. 8, p. 2027, doi. 10.1007/s00216-014-8357-8
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- Publication type:
- Article
Poincaré and SimBio: a versatile and extensible Python ecosystem for modeling systems.
- Published in:
- Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae465
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- Publication type:
- Article
ReactomeGSA: new features to simplify public data reuse.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae338
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- Publication type:
- Article
IntAct App: a Cytoscape application for molecular interaction network visualization and analysis.
- Published in:
- Bioinformatics, 2021, v. 37, n. 20, p. 3684, doi. 10.1093/bioinformatics/btab319
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- Publication type:
- Article
decoupled, modular and scriptable architecture for tools to curate data platforms.
- Published in:
- Bioinformatics, 2021, v. 37, n. 20, p. 3693, doi. 10.1093/bioinformatics/btab233
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- Publication type:
- Article
Identifiers.org: Compact Identifier services in the cloud.
- Published in:
- Bioinformatics, 2021, v. 37, n. 12, p. 1781, doi. 10.1093/bioinformatics/btaa864
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- Publication type:
- Article
The Minimum Information about a Molecular Interaction CAusal STatement (MI2CAST).
- Published in:
- Bioinformatics, 2020, v. 36, n. 24, p. 5712, doi. 10.1093/bioinformatics/btaa622
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- Publication type:
- Article
The HUPO proteomics standards initiative—easing communication and minimizing data loss in a changing world.
- Published in:
- Briefings in Bioinformatics, 2008, v. 9, n. 2, p. 166, doi. 10.1093/bib/bbm061
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- Publication type:
- Article
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping.
- Published in:
- GigaScience, 2019, v. 8, n. 8, p. N.PAG, doi. 10.1093/gigascience/giz088
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- Publication type:
- Article
Path4Drug: Data Science Workflow for Identification of Tissue-Specific Biological Pathways Modulated by Toxic Drugs.
- Published in:
- Frontiers in Pharmacology, 2021, v. 12, p. 1, doi. 10.3389/fphar.2021.708296
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- Publication type:
- Article
LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics
- Published in:
- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0061951
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- Publication type:
- Article
MyDas, an Extensible Java DAS Server.
- Published in:
- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044180
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- Publication type:
- Article