Found: 72
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CIBRA identifies genomic alterations with a system-wide impact on tumor biology.
- Published in:
- Bioinformatics, 2024, v. 40, p. ii37, doi. 10.1093/bioinformatics/btae384
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- Publication type:
- Article
Tracking repeats using significance and transitivity.
- Published in:
- Bioinformatics, 2004, v. 20, n. suppl_1, p. i311, doi. 10.1093/bioinformatics/bth911
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- Publication type:
- Article
Tracking repeats using significance and transitivity.
- Published in:
- Bioinformatics, 2004, v. 20, p. i311, doi. 10.1093/bioinformatics/bth911
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- Publication type:
- Article
Parallelized multiple alignment.
- Published in:
- Bioinformatics, 2002, v. 18, n. 9, p. 1270, doi. 10.1093/bioinformatics/18.9.1270
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- Publication type:
- Article
NatalieQ: A web server for protein-protein interaction network querying.
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 40, doi. 10.1186/1752-0509-8-40
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- Publication type:
- Article
Computational estimation of tricarboxylic acid cycle fluxes using noisy NMR data from cardiac biopsies.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-82
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- Publication type:
- Article
Natalie 2.0: Sparse Global Network Alignment as a Special Case of Quadratic Assignment.
- Published in:
- Algorithms, 2015, v. 8, n. 4, p. 1035, doi. 10.3390/a8041035
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- Publication type:
- Article
CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations.
- Published in:
- BMC Genomics, 2009, v. 10, p. 401, doi. 10.1186/1471-2164-10-401
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- Publication type:
- Article
Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0758-y
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- Publication type:
- Article
Mapping proteins in the presence of paralogs using units of coevolution.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S18
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- Publication type:
- Article
Analysis of the functional properties of the creatine kinase system using a multiscale 'sloppy' modeling approach.
- Published in:
- 2010
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- Publication type:
- Abstract
Structure and function analysis of flexible alignment regions in proteins.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S13-P6
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- Publication type:
- Article
HIV-1 envelope glycoprotein signatures that correlate with the development of cross-reactive neutralizing activity.
- Published in:
- Retrovirology, 2013, v. 10, n. 1, p. 1, doi. 10.1186/1742-4690-10-102
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- Publication type:
- Article
Bioinformatics in the Netherlands: the value of a nationwide community.
- Published in:
- Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 375, doi. 10.1093/bib/bbx087
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- Publication type:
- Article
Bioinformatics and Systems Biology: bridging the gap between heterogeneous student backgrounds.
- Published in:
- Briefings in Bioinformatics, 2013, v. 14, n. 5, p. 589, doi. 10.1093/bib/bbt023
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- Publication type:
- Article
An analysis of protein domain linkers: their classification and role in protein folding.
- Published in:
- Protein Engineering, 2002, v. 15, n. 11, p. 871, doi. 10.1093/protein/15.11.871
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- Publication type:
- Article
A Fourier analysis of symmetry in protein structure.
- Published in:
- Protein Engineering, 2002, v. 15, n. 2, p. 79, doi. 10.1093/protein/15.2.79
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- Publication type:
- Article
Mining literature and pathway data to explore the relations of ketamine with neurotransmitters and gut microbiota using a knowledge-graph.
- Published in:
- Bioinformatics, 2024, v. 40, n. 1, p. 1, doi. 10.1093/bioinformatics/btad771
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- Publication type:
- Article
PIPENN: protein interface prediction from sequence with an ensemble of neural nets.
- Published in:
- Bioinformatics, 2022, v. 38, n. 8, p. 2111, doi. 10.1093/bioinformatics/btac071
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- Publication type:
- Article
SeRenDIP-CE: sequence-based interface prediction for conformational epitopes.
- Published in:
- Bioinformatics, 2021, v. 37, n. 20, p. 3421, doi. 10.1093/bioinformatics/btab321
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- Publication type:
- Article
A framework for exhaustive modelling of genetic interaction patterns using Petri nets.
- Published in:
- Bioinformatics, 2020, v. 36, n. 7, p. 2142, doi. 10.1093/bioinformatics/btz917
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- Publication type:
- Article
Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit.
- Published in:
- Bioinformatics, 2019, v. 35, n. 24, p. 5315, doi. 10.1093/bioinformatics/btz572
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- Publication type:
- Article
SeRenDIP: SEquential REmasteriNg to DerIve profiles for fast and accurate predictions of PPI interface positions.
- Published in:
- Bioinformatics, 2019, v. 35, n. 22, p. 4794, doi. 10.1093/bioinformatics/btz428
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- Publication type:
- Article
Training for translation between disciplines: a philosophy for life and data sciences curricula.
- Published in:
- Bioinformatics, 2018, v. 34, n. 13, p. i4, doi. 10.1093/bioinformatics/bty233
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- Publication type:
- Article
Applying federated learning to combat food fraud in food supply chains.
- Published in:
- NPJ Science of Food, 2023, v. 7, n. 1, p. 1, doi. 10.1038/s41538-023-00220-3
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- Publication type:
- Article
Author Correction: Applying federated learning to combat food fraud in food supply chains.
- Published in:
- 2023
- By:
- Publication type:
- Correction Notice
Applying federated learning to combat food fraud in food supply chains.
- Published in:
- NPJ Science of Food, 2023, v. 7, n. 1, p. 1, doi. 10.1038/s41538-023-00220-3
- By:
- Publication type:
- Article
HIV-1 Replication Fitness of HLA-B*57/58:01 CTL Escape Variants Is Restored by the Accumulation of Compensatory Mutations in Gag.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0081235
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- Publication type:
- Article
A Protein Prioritization Approach Tailored for the FA/BRCA Pathway.
- Published in:
- PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0062017
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- Publication type:
- Article
Mining Inter-Relationships in Online Scientific Articles and its Visualization: Natural Language Processing for Systems Biology Modeling.
- Published in:
- International Journal of Online & Biomedical Engineering, 2019, v. 15, n. 2, p. 39, doi. 10.3991/ijoe.v15i02.9432
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- Publication type:
- Article
Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome mapping.
- Published in:
- Scientific Reports, 2016, p. 35436, doi. 10.1038/srep35436
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- Publication type:
- Article
Enabling Grand-Canonical Monte Carlo: Extending the Flexibility of GROMACS Through the GromPy Python Interface Module.
- Published in:
- Journal of Computational Chemistry, 2012, v. 33, n. 12, p. 1207, doi. 10.1002/jcc.22947
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- Publication type:
- Article
On defining the dynamics of hydrophobic patches on protein surfaces.
- Published in:
- Proteins, 2008, v. 72, n. 1, p. 105, doi. 10.1002/prot.21924
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- Publication type:
- Article
Global multiple-sequence alignment with repeats.
- Published in:
- Proteins, 2006, v. 64, n. 1, p. 263, doi. 10.1002/prot.20957
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- Publication type:
- Article
ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 8, p. 1, doi. 10.1093/nar/gkv1518
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- Publication type:
- Article
NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W301, doi. 10.1093/nar/gkv346
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- Publication type:
- Article
Multi-Harmony: detecting functional specificity from sequence alignment.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W35, doi. 10.1093/nar/gkq415
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- Publication type:
- Article
Protein domain identification and improved sequence similarity searching using PSI-BLAST.
- Published in:
- Proteins, 2002, v. 48, n. 4, p. 672, doi. 10.1002/prot.10175
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- Publication type:
- Article
Strain in protein structures as viewed through nonrotameric side chains: II. effects upon ligand binding.
- Published in:
- Proteins, 1999, v. 37, n. 1, p. 44, doi. 10.1002/(SICI)1097-0134(19991001)37:1<44::AID-PROT5>3.0.CO;2-F
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- Publication type:
- Article
Strain in protein structures as viewed through nonrotameric side chains: I. their position and interaction.
- Published in:
- Proteins, 1999, v. 37, n. 1, p. 30, doi. 10.1002/(SICI)1097-0134(19991001)37:1<30::AID-PROT4>3.0.CO;2-P
- By:
- Publication type:
- Article
Interaction of Transmembrane Helices by a Knobs-lnto-Holes Packing Characteristic of Soluble Coiled Coils
- Published in:
- Proteins, 1998, v. 31, n. 2, p. 150
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- Publication type:
- Article
A method to recognize distant repeats in protein sequences.
- Published in:
- Proteins, 1993, v. 17, n. 4, p. 391, doi. 10.1002/prot.340170407
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- Publication type:
- Article
Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest.
- Published in:
- Bioinformatics, 2017, v. 33, n. 10, p. 1479, doi. 10.1093/bioinformatics/btx005
- By:
- Publication type:
- Article
ECCB 2016: The 15th European Conference on Computational Biology.
- Published in:
- 2016
- By:
- Publication type:
- Proceeding
BioASF: a framework for automatically generating executable pathway models specified in BioPAX.
- Published in:
- Bioinformatics, 2016, v. 32, n. 12, p. i60, doi. 10.1093/bioinformatics/btw250
- By:
- Publication type:
- Article
metaModules identifies key functional subnetworks in microbiome-related disease.
- Published in:
- Bioinformatics, 2016, v. 32, n. 11, p. 1678, doi. 10.1093/bioinformatics/btv526
- By:
- Publication type:
- Article
xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model.
- Published in:
- Bioinformatics, 2015, v. 31, n. 19, p. 3147, doi. 10.1093/bioinformatics/btv316
- By:
- Publication type:
- Article
Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations.
- Published in:
- Bioinformatics, 2014, v. 30, n. 11, p. 1530, doi. 10.1093/bioinformatics/btu085
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- Publication type:
- Article
Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins.
- Published in:
- Bioinformatics, 2014, v. 30, n. 3, p. 326, doi. 10.1093/bioinformatics/btt675
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- Publication type:
- Article
Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model.
- Published in:
- Bioinformatics, 2013, v. 29, n. 13, p. i80, doi. 10.1093/bioinformatics/btt243
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- Publication type:
- Article