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Variable HIV peptide stability in human cytosol is critical to epitope presentation and immune escape.
- Published in:
- 2011
- By:
- Publication type:
- journal article
Model-Based Clustering and Visualization of Navigation Patterns on a Web Site.
- Published in:
- Data Mining & Knowledge Discovery, 2003, v. 7, n. 4, p. 399, doi. 10.1023/A:1024992613384
- By:
- Publication type:
- Article
Efficient Control of Population Structure in Model Organism Association Mapping.
- Published in:
- Genetics, 2008, v. 178, n. 3, p. 1709, doi. 10.1534/genetics.107.080101
- By:
- Publication type:
- Article
Quantifying the uncertainty in heritability.
- Published in:
- Journal of Human Genetics, 2014, v. 59, n. 5, p. 269, doi. 10.1038/jhg.2014.15
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- Publication type:
- Article
Patterns of methylation heritability in a genome-wide analysis of four brain regions.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 4, p. 2095, doi. 10.1093/nar/gks1449
- By:
- Publication type:
- Article
FaST-LMM-Select for addressing confounding from spatial structure and rare variants.
- Published in:
- Nature Genetics, 2013, v. 45, n. 5, p. 470, doi. 10.1038/ng.2620
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- Publication type:
- Article
Accurate liability estimation improves power in ascertained case-control studies.
- Published in:
- Nature Methods, 2015, v. 12, n. 4, p. 332, doi. 10.1038/nmeth.3285
- By:
- Publication type:
- Article
Epigenome-wide association studies without the need for cell-type composition.
- Published in:
- Nature Methods, 2014, v. 11, n. 3, p. 309, doi. 10.1038/nmeth.2815
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- Publication type:
- Article
Improved linear mixed models for genome-wide association studies.
- Published in:
- Nature Methods, 2012, v. 9, n. 6, p. 525, doi. 10.1038/nmeth.2037
- By:
- Publication type:
- Article
FaST linear mixed models for genome-wide association studies.
- Published in:
- Nature Methods, 2011, v. 8, n. 10, p. 833, doi. 10.1038/nmeth.1681
- By:
- Publication type:
- Article
Anti-Hepatitis C Virus T-Cell Immunity in the Context of Multiple Exposures to the Virus.
- Published in:
- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130420
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- Publication type:
- Article
Nef-Specific CD8+ T Cell Responses Contribute to HIV-1 Immune Control.
- Published in:
- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0073117
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- Publication type:
- Article
HIV-1 p24<sup>gag</sup> Derived Conserved Element DNA Vaccine Increases the Breadth of Immune Response in Mice.
- Published in:
- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060245
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- Publication type:
- Article
Co-Operative Additive Effects between HLA Alleles in Control of HIV-1.
- Published in:
- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047799
- By:
- Publication type:
- Article
Improved Learning in U.S. History and Decision Competence with Decision-Focused Curriculum.
- Published in:
- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045775
- By:
- Publication type:
- Article
Learning Transcriptional Regulatory Relationships Using Sparse Graphical Models.
- Published in:
- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0035762
- By:
- Publication type:
- Article
CTL Responses of High Functional Avidity and Broad Variant Cross-Reactivity Are Associated with HIV Control.
- Published in:
- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029717
- By:
- Publication type:
- Article
Conditional Random Fields for Fast, Large-Scale Genome-Wide Association Studies.
- Published in:
- PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0021591
- By:
- Publication type:
- Article
Progression to AIDS in South Africa Is Associated with both Reverting and Compensatory Viral Mutations.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0019018
- By:
- Publication type:
- Article
Increased Breadth and Depth of Cytotoxic T Lymphocytes Responses against HIV-1-B Nef by Inclusion of Epitope Variant Sequences.
- Published in:
- PLoS ONE, 2011, v. 6, n. 3, p. 1, doi. 10.1371/journal.pone.0017969
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- Publication type:
- Article
Amino-Acid Co-Variation in HIV-1 Gag Subtype C: HLA-Mediated Selection Pressure and Compensatory Dynamics.
- Published in:
- PLoS ONE, 2010, v. 5, n. 9, p. 1, doi. 10.1371/journal.pone.0012463
- By:
- Publication type:
- Article
HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins.
- Published in:
- PLoS ONE, 2009, v. 4, n. 8, p. 1, doi. 10.1371/journal.pone.0006687
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- Publication type:
- Article
Broad and Gag-Biased HIV-1 Epitope Repertoires Are Associated with Lower Viral Loads.
- Published in:
- PLoS ONE, 2008, v. 3, n. 1, p. 1, doi. 10.1371/journal.pone.0001424
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- Publication type:
- Article
Ranking of non-coding pathogenic variants and putative essential regions of the human genome.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13212-3
- By:
- Publication type:
- Article
HIV-1 adaptation to NK-cell-mediated immune pressure.
- Published in:
- Nature, 2011, v. 476, n. 7358, p. 96, doi. 10.1038/nature10237
- By:
- Publication type:
- Article
Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves.
- Published in:
- JAMA Network Open, 2023, v. 6, n. 2, p. e231181, doi. 10.1001/jamanetworkopen.2023.1181
- By:
- Publication type:
- Article
Changes in impact of HLA class I allele expression on HIV-1 plasma virus loads at a population level over time.
- Published in:
- Microbiology & Immunology, 2010, v. 54, n. 4, p. 196, doi. 10.1111/j.1348-0421.2010.00206.x
- By:
- Publication type:
- Article
Evidence of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1.
- Published in:
- PLoS Pathogens, 2007, v. 3, n. 7, p. e94, doi. 10.1371/journal.ppat.0030094
- By:
- Publication type:
- Article
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004229
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- Publication type:
- Article
Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000225
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- Publication type:
- Article
Statistical Resolution of Ambiguous HLA Typing Data.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000016
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- Publication type:
- Article
Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al.
- Published in:
- 2008
- By:
- Publication type:
- Letter
A Statistical Framework for Modeling HLA-Dependent T Cell Response Data.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 10, p. e188, doi. 10.1371/journal.pcbi.0030188
- By:
- Publication type:
- Article
Coping with Viral Diversity in HIV Vaccine Design.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 4, p. e75, doi. 10.1371/journal.pcbi.0030075
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- Publication type:
- Article
Control of human immunodeficiency virus replication by cytotoxic T lymphocytes targeting subdominant epitopes.
- Published in:
- Nature Immunology, 2006, v. 7, n. 2, p. 173, doi. 10.1038/ni1281
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- Publication type:
- Article
Beyond atopy: multiple patterns of sensitization in relation to asthma in a birth cohort study.
- Published in:
- 2010
- By:
- Publication type:
- journal article
Role of Transmitted Gag CTL Polymorphisms in Defining Replicative Capacity and Early HIV-1 Pathogenesis.
- Published in:
- PLoS Pathogens, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.ppat.1003041
- By:
- Publication type:
- Article
Probabilistic similarity networks.
- Published in:
- Networks, 1990, v. 20, n. 5, p. 607, doi. 10.1002/net.3230200508
- By:
- Publication type:
- Article
Fine-mapping classical HLA variation associated with durable host control of HIV-1 infection in African Americans.
- Published in:
- Human Molecular Genetics, 2012, v. 21, n. 19, p. 4334, doi. 10.1093/hmg/dds226
- By:
- Publication type:
- Article
Further Improvements to Linear Mixed Models for Genome-Wide Association Studies.
- Published in:
- Scientific Reports, 2014, p. 1, doi. 10.1038/srep06874
- By:
- Publication type:
- Article
Targeted Advertising on the Web with Inventory Management.
- Published in:
- Interfaces, 2003, v. 33, n. 5, p. 71, doi. 10.1287/inte.33.5.71.19248
- By:
- Publication type:
- Article
Considering Cost Asymmetry in Learning Classifiers.
- Published in:
- Journal of Machine Learning Research, 2006, v. 7, n. 8, p. 1713
- By:
- Publication type:
- Article
An MDP-Based Recommender System.
- Published in:
- Journal of Machine Learning Research, 2005, v. 6, n. 9, p. 1265
- By:
- Publication type:
- Article
Dependency Networks for Inference, Collaborative Filtering, and Data Visualization.
- Published in:
- Journal of Machine Learning Research, 2001, v. 1, n. 1, p. 49, doi. 10.1162/153244301753344614
- By:
- Publication type:
- Article
The Learning-Curve Sampling Method Applied to Model-Based Clustering.
- Published in:
- Journal of Machine Learning Research, 2002, v. 2, n. 3, p. 397, doi. 10.1162/153244302760200678
- By:
- Publication type:
- Article
High-avidity, high-IFNγ-producing CD8 T-cell responses following immune selection during HIV-1 infection.
- Published in:
- Immunology & Cell Biology, 2012, v. 90, n. 2, p. 224, doi. 10.1038/icb.2011.34
- By:
- Publication type:
- Article
Greater power and computational efficiency for kernel-based association testing of sets of genetic variants.
- Published in:
- Bioinformatics, 2014, v. 30, n. 22, p. 3206, doi. 10.1093/bioinformatics/btu504
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- Publication type:
- Article
Literome: PubMed-scale genomic knowledge base in the cloud.
- Published in:
- Bioinformatics, 2014, v. 30, n. 19, p. 2840, doi. 10.1093/bioinformatics/btu383
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- Publication type:
- Article
A powerful and efficient set test for genetic markers that handles confounders.
- Published in:
- Bioinformatics, 2013, v. 29, n. 12, p. 1526, doi. 10.1093/bioinformatics/btt177
- By:
- Publication type:
- Article
PhyloDet: a scalable visualization tool for mapping multiple traits to large evolutionary trees.
- Published in:
- Bioinformatics, 2009, v. 25, n. 19, p. 2611, doi. 10.1093/bioinformatics/btp454
- By:
- Publication type:
- Article