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Distribution and Spread of Susceptible and Resistant Neisseria gonorrhoeae Across Demographic Groups in a Major Metropolitan Center.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, n. 9, p. e3146, doi. 10.1093/cid/ciaa1229
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- Publication type:
- Article
Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1599-9
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- Publication type:
- Article
Comparative genome analysis of Wolbachia strain wAu.
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- BMC Genomics, 2014, v. 15, n. 1, p. 928, doi. 10.1186/1471-2164-15-928
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- Publication type:
- Article
A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.
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- BMC Genomics, 2012, v. 13, n. 1, p. 341, doi. 10.1186/1471-2164-13-341
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- Publication type:
- Article
Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005-2010.
- Published in:
- 2016
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- Publication type:
- journal article
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes.
- Published in:
- Nature Communications, 2016, v. 7, n. 9, p. 12797, doi. 10.1038/ncomms12797
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- Publication type:
- Article
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages.
- Published in:
- Nature Communications, 2016, v. 7, n. 2, p. 10688, doi. 10.1038/ncomms10688
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- Publication type:
- Article
Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission.
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- Nature Communications, 2015, v. 6, n. 3, p. 6560, doi. 10.1038/ncomms7560
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- Publication type:
- Article
A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00858-2
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- Publication type:
- Article
Loss of Genomic Diversity in a Neisseria meningitidis Clone Through a Colonization Bottleneck.
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- Genome Biology & Evolution, 2018, v. 10, n. 8, p. 2102, doi. 10.1093/gbe/evy152
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- Publication type:
- Article
Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape.
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- Genome Biology & Evolution, 2014, v. 6, n. 7, p. 1589, doi. 10.1093/gbe/evu120
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- Publication type:
- Article
The Evolutionary Path to Extraintestinal Pathogenic, Drug-Resistant Escherichia coli Is Marked by Drastic Reduction in Detectable Recombination within the Core Genome.
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- 2013
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- Publication type:
- Art Reproduction
Seeding and Establishment of Legionella pneumophila in Hospitals: Implications for Genomic Investigations of Nosocomial Legionnaires' Disease.
- Published in:
- Clinical Infectious Diseases, 2017, v. 64, n. 9, p. 1251, doi. 10.1093/cid/cix153
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- Publication type:
- Article
Genomic Investigations Unmask Mycoplasma amphoriforme, a New Respiratory Pathogen.
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- Clinical Infectious Diseases, 2015, v. 60, n. 3, p. 381, doi. 10.1093/cid/ciu820
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- Publication type:
- Article
Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain.
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- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-239
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- Publication type:
- Article
The Genome of the Obligate Intracellular Parasite Trachipleistophora hominis: New Insights into Microsporidian Genome Dynamics and Reductive Evolution.
- Published in:
- PLoS Pathogens, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.ppat.1002979
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- Publication type:
- Article
A High-Resolution View of Genome-Wide Pneumococcal Transformation.
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- PLoS Pathogens, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.ppat.1002745
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- Publication type:
- Article
Evidence for several waves of global transmission in the seventh cholera pandemic.
- Published in:
- Nature, 2011, v. 477, n. 7365, p. 462, doi. 10.1038/nature10392
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- Publication type:
- Article
Whole Genome Sequencing of a Methicillin-Resistant Staphylococcus aureus Pseudo-Outbreak in a Professional Football Team.
- Published in:
- 2014
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- Publication type:
- Case Study
The First population structure and comparative genomics analysis of Mycobacterium africanum strains from Ghana reveals higher diversity of Lineage 5.
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- International Journal of Mycobacteriology, 2016, v. 5, p. S80, doi. 10.1016/j.ijmyco.2016.09.051
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- Publication type:
- Article
A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae.
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- EMBO Molecular Medicine, 2015, v. 7, n. 3, p. 227, doi. 10.15252/emmm.201404767
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- Publication type:
- Article
The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex.
- Published in:
- PLoS Neglected Tropical Diseases, 2012, v. 6, n. 2, p. 1, doi. 10.1371/journal.pntd.0001552
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- Publication type:
- Article
The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex.
- Published in:
- PLoS Neglected Tropical Diseases, 2012, v. 6, n. 2, p. 1, doi. 10.1371/journal.pntd.0001552
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- Publication type:
- Article
Evolution and transmission of drug-resistant tuberculosis in a Russian population.
- Published in:
- Nature Genetics, 2014, v. 46, n. 3, p. 279, doi. 10.1038/ng.2878
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- Publication type:
- Article
Dense genomic sampling identifies highways of pneumococcal recombination.
- Published in:
- Nature Genetics, 2014, v. 46, n. 3, p. 305, doi. 10.1038/ng.2895
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- Publication type:
- Article
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.
- Published in:
- Nature Genetics, 2013, v. 45, n. 10, p. 1176, doi. 10.1038/ng.2744
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- Publication type:
- Article
Emergence and global spread of epidemic healthcare-associated Clostridium difficile.
- Published in:
- Nature Genetics, 2013, v. 45, n. 1, p. 109, doi. 10.1038/ng.2478
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- Publication type:
- Article
Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa.
- Published in:
- Nature Genetics, 2012, v. 44, n. 11, p. 1215, doi. 10.1038/ng.2423
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- Publication type:
- Article
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.
- Published in:
- Nature Genetics, 2012, v. 44, n. 4, p. 413, doi. 10.1038/ng.2214
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- Publication type:
- Article
Using whole genome sequencing to investigate transmission in a multi-host system: bovine tuberculosis in New Zealand.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3569-x
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- Publication type:
- Article
Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3112-5
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- Publication type:
- Article
The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2426-7
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- Publication type:
- Article
Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-015-2234-5
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- Publication type:
- Article
Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes.
- Published in:
- PLoS Genetics, 2014, v. 10, n. 8, p. 1, doi. 10.1371/journal.pgen.1004547
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- Publication type:
- Article
Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution.
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- PLoS Genetics, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pgen.1004300
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- Publication type:
- Article
Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection.
- Published in:
- PLoS Genetics, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pgen.1003868
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- Publication type:
- Article
Horizontally Acquired Glycosyltransferase Operons Drive Salmonellae Lipopolysaccharide Diversity.
- Published in:
- PLoS Genetics, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pgen.1003568
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- Publication type:
- Article
Whole Genome Sequence Analysis of a Large Isoniazid-Resistant Tuberculosis Outbreak in London: A Retrospective Observational Study.
- Published in:
- 2016
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- Publication type:
- journal article
BamView: visualizing and interpretation of next-generation sequencing read alignments.
- Published in:
- Briefings in Bioinformatics, 2013, v. 14, n. 2, p. 203, doi. 10.1093/bib/bbr073
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- Publication type:
- Article
Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA.
- Published in:
- Nature Protocols, 2013, v. 8, n. 12, p. 2404, doi. 10.1038/nprot.2013.147
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- Publication type:
- Article
Correction: Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa.
- Published in:
- 2015
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- Publication type:
- Correction Notice
Locally Confined Clonal Complexes of Mycobacterium ulcerans in Two Buruli Ulcer Endemic Regions of Cameroon.
- Published in:
- PLoS Neglected Tropical Diseases, 2015, v. 9, n. 6, p. 1, doi. 10.1371/journal.pntd.0003802
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- Publication type:
- Article
Locally Confined Clonal Complexes of Mycobacterium ulcerans in Two Buruli Ulcer Endemic Regions of Cameroon.
- Published in:
- PLoS Neglected Tropical Diseases, 2015, v. 9, n. 6, p. 1, doi. 10.1371/journal.pntd.0003802
- By:
- Publication type:
- Article
Correction: Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa.
- Published in:
- 2015
- By:
- Publication type:
- Correction Notice
Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa.
- Published in:
- PLoS Neglected Tropical Diseases, 2015, v. 9, n. 3, p. 1, doi. 10.1371/journal.pntd.0003611
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- Publication type:
- Article
Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa.
- Published in:
- PLoS Neglected Tropical Diseases, 2015, v. 9, n. 3, p. 1, doi. 10.1371/journal.pntd.0003611
- By:
- Publication type:
- Article
Genomic Characterisation of Invasive Non-Typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans Isolates from Malawi.
- Published in:
- PLoS Neglected Tropical Diseases, 2013, v. 7, n. 11, p. 1, doi. 10.1371/journal.pntd.0002557
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- Publication type:
- Article
Genomic Characterisation of Invasive Non-Typhoidal <i>Salmonella enterica</i> Subspecies <i>enterica</i> Serovar Bovismorbificans Isolates from Malawi.
- Published in:
- PLoS Neglected Tropical Diseases, 2013, v. 7, n. 11, p. 1, doi. 10.1371/journal.pntd.0002557
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- Publication type:
- Article
Read and assembly metrics inconsequential for clinical utility of whole-genome sequencing in mapping outbreaks.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 7, p. 592, doi. 10.1038/nbt.2616
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- Publication type:
- Article
Genomic evolution of Neisseria gonorrhoeae since the preantibiotic era (1928–2013): antimicrobial use/misuse selects for resistance and drives evolution.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6511-6
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- Publication type:
- Article