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Multiple sequence alignment with arbitrary gap costs: Computing an optimal solution using polyhedral combinatorics.
- Published in:
- Bioinformatics, 2002, v. 18, p. S4, doi. 10.1093/bioinformatics/18.suppl_2.S4
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- Article
BALL--rapid software prototyping in computational molecular biology.
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- Bioinformatics, 2000, v. 16, n. 9, p. 815, doi. 10.1093/bioinformatics/16.9.815
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- Article
An exact solution for the segment‐to‐segment multiple sequence alignment problem.
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- Bioinformatics, 1999, v. 15, n. 3, p. 203, doi. 10.1093/bioinformatics/15.3.203
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- Article
Low miR-150-5p and miR-320b Expression Predicts Reduced Survival of COPD Patients.
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- Cells (2073-4409), 2019, v. 8, n. 10, p. 1162, doi. 10.3390/cells8101162
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- Article
Frequent overexpression of the genes FXR1, CLAPM1 and EIF4G located on amplicon 3q26-27 in squamous cell carcinoma of the lung.
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- International Journal of Cancer, 2007, v. 120, n. 12, p. 2538, doi. 10.1002/ijc.22585
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- Article
Cas9-mediated knockout of Ndrg2 enhances the regenerative potential of dendritic cells for wound healing.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40519-z
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- Publication type:
- Article
miR-34a: a new player in the regulation of T cell function by modulation of NF-κB signaling.
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- Cell Death & Disease, 2019, v. 10, n. 2, p. 1, doi. 10.1038/s41419-018-1295-1
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- Publication type:
- Article
Modulation of intracellular calcium signaling by microRNA-34a-5p.
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- Cell Death & Disease, 2018, v. 9, n. 10, p. 1, doi. 10.1038/s41419-018-1050-7
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- Article
The Roche Cancer Genome Database 2.0.
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- BMC Medical Genomics, 2011, v. 4, n. 1, p. 43, doi. 10.1186/1755-8794-4-43
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- Article
Abstract analysis of pathways using the BN++ software framework.
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- 2007
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- Abstract
Systematic permutation testing in GWAS pathway analyses: identification of genetic networks in dilated cardiomyopathy and ulcerative colitis
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- BMC Genomics, 2014, v. 15, n. 1, p. 622, doi. 10.1186/1471-2164-15-622
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- Article
Treatment-independent miRNA signature in blood of wilms tumor patients.
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- BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-379
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- Article
Immunogenicity of autoantigens.
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- BMC Genomics, 2011, v. 12, n. 1, p. 340, doi. 10.1186/1471-2164-12-340
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- Article
Time-resolved RNA signatures of CD4+ T cells in Parkinson's disease.
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- Cell Death Discovery, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41420-023-01333-0
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- Article
Combining miRNA and mRNA Expression Profiles in Wilms Tumor Subtypes.
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- International Journal of Molecular Sciences, 2016, v. 17, n. 4, p. 475, doi. 10.3390/ijms17040475
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- Article
NightShift: NMR shift inference by general hybrid model training - a framework for NMR chemical shift prediction.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-98
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- Publication type:
- Article
BALL - biochemical algorithms library 1.3.
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- BMC Bioinformatics, 2010, v. 11, p. 531, doi. 10.1186/1471-2105-11-531
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- Publication type:
- Article
Langevin dynamics simulations of macromolecules on parallel computers.
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- Macromolecular Theory & Simulations, 1997, v. 6, n. 2, p. 507, doi. 10.1002/mats.1997.040060213
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- Publication type:
- Article
BALLView: An object-oriented molecular visualization and modeling framework.
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- Journal of Computer-Aided Molecular Design, 2005, v. 19, n. 11, p. 791, doi. 10.1007/s10822-005-9027-x
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- Publication type:
- Article
A comprehensive benchmarking of machine learning algorithms and dimensionality reduction methods for drug sensitivity prediction.
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- Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae242
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- Article
SEQUENTIAL AND PARALLEL ALGORITHMS FOR THE k CLOSEST PAIRS PROBLEM.
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- International Journal of Computational Geometry & Applications, 1995, v. 5, n. 3, p. 273, doi. 10.1142/S0218195995000167
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- Article
Identification of lung cancer with high sensitivity and specificity by blood testing.
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- Respiratory Research, 2010, v. 11, p. 18, doi. 10.1186/1465-9921-11-18
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- Article
Novel autoantigens immunogenic in COPD patients.
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- Respiratory Research, 2009, v. 10, p. 1, doi. 10.1186/1465-9921-10-20
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- Article
BNDB -- The Biochemical Network Database.
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- BMC Bioinformatics, 2007, v. 8, p. 367, doi. 10.1186/1471-2105-8-367
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- Publication type:
- Article
Glycosylation patterns of human chorionic gonadotropin revealed by liquid chromatography-mass spectrometry and bioinformatics.
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- Electrophoresis, 2006, v. 27, n. 13, p. 2734, doi. 10.1002/elps.200600022
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- Article
MERIDA: a novel Boolean logic-based integer linear program for personalized cancer therapy.
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- Bioinformatics, 2021, v. 37, n. 21, p. 3881, doi. 10.1093/bioinformatics/btab546
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- Publication type:
- Article
ClinOmicsTrail<sup>bc</sup>: a visual analytics tool for breast cancer treatment stratification.
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- Bioinformatics, 2019, v. 35, n. 24, p. 5171, doi. 10.1093/bioinformatics/btz302
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- Article
BiNA: A Visual Analytics Tool for Biological Network Data.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0087397
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- Article
Autoantibody Signature Differentiates Wilms Tumor Patients from Neuroblastoma Patients.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028951
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- Article
Multiple Sclerosis: MicroRNA Expression Profiles Accurately Differentiate Patients with Relapsing- Remitting Disease from Healthy Controls.
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- PLoS ONE, 2009, v. 4, n. 10, p. 1, doi. 10.1371/journal.pone.0007440
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- Article
Increased Seroreactivity to Glioma-Expressed Antigen 2 in Brain Tumor Patients under Radiation.
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- PLoS ONE, 2008, v. 3, n. 5, p. 1, doi. 10.1371/journal.pone.0002164
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- Article
Efficient computation of root mean square deviations under rigid transformations.
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- Journal of Computational Chemistry, 2014, v. 35, n. 10, p. 765, doi. 10.1002/jcc.23513
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- Article
Circulating serum miRNAs as potential biomarkers for nephroblastoma.
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- Pediatric Blood & Cancer, 2015, v. 62, n. 8, p. 1360, doi. 10.1002/pbc.25481
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- Article
Staphylococcus aureus ClpC ATPase is a late growth phase effector of metabolism and persistence.
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- Proteomics, 2009, v. 9, n. 5, p. 1152, doi. 10.1002/pmic.200800586
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- Article
Network-based interactive navigation and analysis of large biological datasets.
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- IT: Information Technology, 2015, v. 57, n. 1, p. 37, doi. 10.1515/itit-2014-1076
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- Article
DGCR8 E518K mutation found in Wilms tumors leads to a partial miRNA processing defect that alters gene expression patterns and biological processes.
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- Carcinogenesis, 2022, v. 43, n. 2, p. 82, doi. 10.1093/carcin/bgab110
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- Article
A branch-and-cut algorithm for multiple sequence alignment.
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- Mathematical Programming, 2006, v. 105, n. 2/3, p. 387, doi. 10.1007/s10107-005-0659-3
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- Article
A new Lamarckian genetic algorithm for flexible ligand-receptor docking.
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- Journal of Computational Chemistry, 2010, v. 31, n. 9, p. 1911, doi. 10.1002/jcc.21478
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- Article
A new method for the gradient-based optimization of molecular complexes.
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- Journal of Computational Chemistry, 2009, v. 30, n. 9, p. 1371, doi. 10.1002/jcc.21159
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- Publication type:
- Article
A consensus line search algorithm for molecular potential energy functions.
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- Journal of Computational Chemistry, 2009, v. 30, n. 9, p. 1499, doi. 10.1002/jcc.21175
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- Publication type:
- Article
Structure prediction of protein complexes by an NMR-based protein docking algorithm.
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- Journal of Biomolecular NMR, 2001, v. 20, n. 1, p. 15, doi. 10.1023/A:1011216130486
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- Article
miRTargetLink 2.0—interactive miRNA target gene and target pathway networks.
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- Nucleic Acids Research, 2021, v. 49, n. W1, p. W409, doi. 10.1093/nar/gkab297
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- Article
Validation of human microRNA target pathways enables evaluation of target prediction tools.
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- Nucleic Acids Research, 2021, v. 49, n. 1, p. 127, doi. 10.1093/nar/gkaa1161
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- Publication type:
- Article
Quantitative and time-resolved miRNA pattern of early human T cell activation.
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- Nucleic Acids Research, 2020, v. 48, n. 18, p. 10164, doi. 10.1093/nar/gkaa788
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- Publication type:
- Article
GeneTrail 3: advanced high-throughput enrichment analysis.
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- Nucleic Acids Research, 2020, v. 48, n. W1, p. W515, doi. 10.1093/nar/gkaa306
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- Article
miRPathDB 2.0: a novel release of the miRNA Pathway Dictionary Database.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D142, doi. 10.1093/nar/gkz1022
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- Article
sncRNA Zoo: a repository for circulating small noncoding RNAs in animals.
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- Nucleic Acids Research, 2019, v. 47, n. 9, p. 4431, doi. 10.1093/nar/gkz227
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- Article
An estimate of the total number of true human miRNAs.
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- Nucleic Acids Research, 2019, v. 47, n. 7, p. 3353, doi. 10.1093/nar/gkz097
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- Article
miRCarta: a central repository for collecting miRNA candidates.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. D1, p. D160, doi. 10.1093/nar/gkx851
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- Article
RegulatorTrail: a web service for the identification of key transcriptional regulators.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. W1, p. W146, doi. 10.1093/nar/gkx350
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- Publication type:
- Article