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Effectiveness of mRNA Booster Vaccine Against Coronavirus Disease 2019 Infection and Severe Outcomes Among Persons With and Without Immune Dysfunction: A Retrospective Cohort Study of National Electronic Medical Record Data in the United States.
- Published in:
- Open Forum Infectious Diseases, 2024, v. 11, n. 2, p. 1, doi. 10.1093/ofid/ofae019
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- Publication type:
- Article
De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository.
- Published in:
- Journal of the American Medical Informatics Association, 2023, v. 30, n. 7, p. 1305, doi. 10.1093/jamia/ocad077
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- Publication type:
- Article
Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs.
- Published in:
- Journal of the American Medical Informatics Association, 2023, v. 30, n. 6, p. 1125, doi. 10.1093/jamia/ocad057
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- Publication type:
- Article
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset.
- Published in:
- Journal of the American Medical Informatics Association, 2022, v. 29, n. 7, p. 1172, doi. 10.1093/jamia/ocac054
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- Publication type:
- Article
The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment.
- Published in:
- 2021
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- Publication type:
- journal article
A sea of standards for omics data: sink or swim?
- Published in:
- Journal of the American Medical Informatics Association, 2014, v. 21, n. 2, p. 200, doi. 10.1136/amiajnl-2013-002066
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- Publication type:
- Article
Long COVID risk and pre-COVID vaccination in an EHR-based cohort study from the RECOVER program.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38388-7
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- Publication type:
- Article
Association of Premorbid GLP-1RA and SGLT-2i Prescription Alone and in Combination with COVID-19 Severity.
- Published in:
- Diabetes Therapy, 2024, v. 15, n. 5, p. 1169, doi. 10.1007/s13300-024-01562-1
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- Publication type:
- Article
Uberon, an integrative multi-species anatomy ontology.
- Published in:
- Genome Biology, 2012, v. 13, n. 1, p. 1, doi. 10.1186/gb-2012-13-1-r5
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- Publication type:
- Article
Sharing biological data: why, when, and how.
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- FEBS Letters, 2021, v. 595, n. 7, p. 847, doi. 10.1002/1873-3468.14067
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- Publication type:
- Article
Computing on the anatomical form for disease discovery (338.1).
- Published in:
- FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.338.1
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- Article
An evaluation of GPT models for phenotype concept recognition.
- Published in:
- BMC Medical Informatics & Decision Making, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12911-024-02439-w
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- Publication type:
- Article
Ensuring a safe(r) harbor: Excising personally identifiable information from structured electronic health record data.
- Published in:
- Journal of Clinical & Translational Science, 2022, v. 6, n. 1, p. 1, doi. 10.1017/cts.2021.880
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- Publication type:
- Article
The Effect of the COVID-19 Pandemic on Pulmonary Diagnostic Procedures.
- Published in:
- Annals of the American Thoracic Society, 2022, v. 19, n. 4, p. 695, doi. 10.1513/annalsats.202108-943rl
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- Publication type:
- Article
Underrepresentation of Phenotypic Variability of 16p13.11 Microduplication Syndrome Assessed With an Online Self-Phenotyping Tool (Phenotypr): Cohort Study.
- Published in:
- 2021
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- Publication type:
- journal article
Ontology based molecular signatures for immune cell types via gene expression analysis.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-263
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- Publication type:
- Article
The Global academic research organization network: Data sharing to cure diseases and enable learning health systems.
- Published in:
- Learning Health Systems, 2019, v. 3, n. 1, p. N.PAG, doi. 10.1002/lrh2.10073
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- Publication type:
- Article
The Resource Identification Initiative: a cultural shift in publishing.
- Published in:
- 2016
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- Publication type:
- Editorial
Association of post-COVID phenotypic manifestations with new-onset psychiatric disease.
- Published in:
- Translational Psychiatry, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41398-024-02967-z
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- Publication type:
- Article
The Hearing Impairment Ontology: A Tool for Unifying Hearing Impairment Knowledge to Enhance Collaborative Research.
- Published in:
- Genes, 2019, v. 10, n. 12, p. 960, doi. 10.3390/genes10120960
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- Publication type:
- Article
What is an anatomy ontology?
- Published in:
- Anatomical Record: Advances in Integrative Anatomy & Evolutionary Biology, 2013, v. 296, n. 12, p. 1797, doi. 10.1002/ar.22805
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- Publication type:
- Article
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac087
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- Publication type:
- Article
Simple Standard for Sharing Ontological Mappings (SSSOM).
- Published in:
- Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac035
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- Publication type:
- Article
OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069
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- Publication type:
- Article
landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab003
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- Publication type:
- Article
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz114
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- Publication type:
- Article
Gold-standard ontology-based anatomical annotation in the CRAFT Corpus.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax087
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- Publication type:
- Article
Research resources: curating the new eagle-i discovery system†.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
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- Publication type:
- Article
NSAID use and clinical outcomes in COVID-19 patients: a 38-center retrospective cohort study.
- Published in:
- Virology Journal, 2022, v. 19, n. 1, p. 1, doi. 10.1186/s12985-022-01813-2
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- Publication type:
- Article
Risk factors associated with post-acute sequelae of SARS-CoV-2: an N3C and NIH RECOVER study.
- Published in:
- BMC Public Health, 2023, v. 23, n. 1, p. 1, doi. 10.1186/s12889-023-16916-w
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- Publication type:
- Article
From Reductionism to Reintegration: Solving society's most pressing problems requires building bridges between data types across the life sciences.
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- PLoS Biology, 2021, v. 19, n. 3, p. 1, doi. 10.1371/journal.pbio.3001129
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- Publication type:
- Article
Next-generation diagnostics and disease-gene discovery with the Exomiser.
- Published in:
- Nature Protocols, 2015, v. 10, n. 12, p. 1, doi. 10.1038/nprot.2015.124
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- Publication type:
- Article
Phenopacket-tools: Building and validating GA4GH Phenopackets.
- Published in:
- PLoS ONE, 2023, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0285433
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- Publication type:
- Article
Community risks for SARS-CoV-2 infection among fully vaccinated US adults by rurality: A retrospective cohort study from the National COVID Cohort Collaborative.
- Published in:
- PLoS ONE, 2023, v. 17, n. 1, p. 1, doi. 10.1371/journal.pone.0279968
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- Publication type:
- Article
Coding long COVID: characterizing a new disease through an ICD-10 lens.
- Published in:
- BMC Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12916-023-02737-6
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- Publication type:
- Article
The Ontology of Biological Attributes (OBA)—computational traits for the life sciences.
- Published in:
- Mammalian Genome, 2023, v. 34, n. 3, p. 364, doi. 10.1007/s00335-023-09992-1
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- Publication type:
- Article
New models for human disease from the International Mouse Phenotyping Consortium.
- Published in:
- Mammalian Genome, 2019, v. 30, n. 5/6, p. 143, doi. 10.1007/s00335-019-09804-5
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- Publication type:
- Article
Disease insights through cross-species phenotype comparisons.
- Published in:
- Mammalian Genome, 2015, v. 26, n. 9/10, p. 548, doi. 10.1007/s00335-015-9577-8
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- Publication type:
- Article
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.
- Published in:
- Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae104
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- Publication type:
- Article
A Unified Anatomy Ontology of the Vertebrate Skeletal System.
- Published in:
- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070
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- Publication type:
- Article
Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation.
- Published in:
- PLoS Biology, 2009, v. 7, n. 11, p. 1, doi. 10.1371/journal.pbio.1000247
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- Publication type:
- Article
Developmental Toxicity of the Dithiocarbamate Pesticide Sodium Metam in Zebrafish.
- Published in:
- Toxicological Sciences, 2004, v. 81, n. 2, p. 390, doi. 10.1093/toxsci/kfh202
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- Publication type:
- Article
GA4GH Phenopackets: A Practical Introduction.
- Published in:
- Advanced Genetics, 2023, v. 4, n. 1, p. 1, doi. 10.1002/ggn2.202200016
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- Publication type:
- Article
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond.
- Published in:
- Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00283-x
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- Publication type:
- Article
Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology.
- Published in:
- Journal of Biomedical Semantics, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13326-020-00222-0
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- Publication type:
- Article
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.
- Published in:
- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7
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- Publication type:
- Article
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
- Published in:
- Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21
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- Publication type:
- Article
Thematic series on biomedical ontologies in JBMS: challenges and new directions.
- Published in:
- Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-15
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- Publication type:
- Article
The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio.
- Published in:
- Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-12
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- Publication type:
- Article
Use of animal models for exome prioritization of rare disease genes
- Published in:
- Orphanet Journal of Rare Diseases, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1750-1172-9-S1-O19
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- Publication type:
- Article