OpenURL Connection Search

Select item for more details and to access through your institution.

LB14. Cerebrospinal Fluid Profiling of the Human Host Response Reveals Species-Specific Enterovirus Biosignatures in Acute Flaccid Myelitis Cases.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, p. S998, doi. 10.1093/ofid/ofz415.2497
By:
- Briggs, Benjamin J;
- Santos, Yale;
- Ramesh, Akshaya;
- Grabherr, Manfred;
- Achari, Asmeeta;
- Yu, Guixia;
- Miller, Steve;
- Federman, Scot;
- Arevalo, Shaun;
- Sample, Hannah;
- Zorn, Kelsey;
- Harriman, Kathleen;
- Messenger, Sharon;
- Domingue, Samuel;
- Dominguez, Samuel;
- Glaser, Carol;
- Wadford, Debra;
- Messacar, Kevin;
- Wilson, Michael;
- Chiu, Charles
Publication type:
Article
Modular and configurable optimal sequence alignment software: Cola.
Published in:
Source Code for Biology & Medicine, 2014, v. 9, n. 1, p. 1, doi. 10.1186/1751-0473-9-12
By:
- Zamani, Neda;
- Sundström, Görel;
- Höppner, Marc P.;
- Grabherr, Manfred G.
Publication type:
Article
Investigation of the host transcriptional response to intracellular bacterial infection using Dictyostelium discoideum as a host model.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6269-x
By:
- Kjellin, Jonas;
- Pränting, Maria;
- Bach, Frauke;
- Vaid, Roshan;
- Edelbroek, Bart;
- Li, Zhiru;
- Hoeppner, Marc P.;
- Grabherr, Manfred;
- Isberg, Ralph R.;
- Hagedorn, Monica;
- Söderbom, Fredrik
Publication type:
Article
microTaboo: a general and practical solution to the k-disjoint problem.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1644-6
By:
- Al-Jaff, Mohammed;
- Sandström, Eric;
- Grabherr, Manfred
Publication type:
Article
Combinatorial identification of DNA methylation patterns over age in the human brain.
Published in:
BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1259-3
By:
- Torabi Moghadam, Behrooz;
- Dabrowski, Michal;
- Kaminska, Bozena;
- Grabherr, Manfred G.;
- Komorowski, Jan
Publication type:
Article
Coordinated Changes in Gene Expression Throughout Encystation of Giardia intestinalis.
Published in:
PLoS Neglected Tropical Diseases, 2016, v. 10, n. 3, p. 1, doi. 10.1371/journal.pntd.0004571
By:
- Einarsson, Elin;
- Troell, Karin;
- Hoeppner, Marc P.;
- Grabherr, Manfred;
- Ribacke, Ulf;
- Svärd, Staffan G.
Publication type:
Article
RNA-sequence data normalization through in silico prediction of reference genes: the bacterial response to DNA damage as case study.
Published in:
BioData Mining, 2017, v. 10, n. 1, p. 1, doi. 10.1186/s13040-017-0150-8
By:
- Berghoff, Bork;
- Karlsson, Torgny;
- Källman, Thomas;
- Wagner, E.;
- Grabherr, Manfred
Publication type:
Article
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Published in:
Nature Biotechnology, 2011, v. 29, n. 7, p. 644, doi. 10.1038/nbt.1883
By:
- Grabherr, Manfred G;
- Haas, Brian J;
- Yassour, Moran;
- Levin, Joshua Z;
- Thompson, Dawn A;
- Amit, Ido;
- Adiconis, Xian;
- Fan, Lin;
- Raychowdhury, Raktima;
- Zeng, Qiandong;
- Chen, Zehua;
- Mauceli, Evan;
- Hacohen, Nir;
- Gnirke, Andreas;
- Rhind, Nicholas;
- di Palma, Federica;
- Birren, Bruce W;
- Nusbaum, Chad;
- Lindblad-Toh, Kerstin;
- Friedman, Nir
Publication type:
Article
A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse.
Published in:
Nature Genetics, 2008, v. 40, n. 8, p. 1004, doi. 10.1038/ng.185
By:
- Pielberg, Gerli Rosengren;
- Golovko, Anna;
- Sundström, Elisabeth;
- Curik, Ino;
- Lennartsson, Johan;
- Seltenhammer, Monika H.;
- Druml, Thomas;
- Binns, Matthew;
- Fitzsimmons, Carolyn;
- Lindgren, Gabriella;
- Sandberg, Kaj;
- Baumung, Roswitha;
- Vetterlein, Monika;
- Strömberg, Sara;
- Grabherr, Manfred;
- Wade, Claire;
- Lindblad-Toh, Kerstin;
- Pontén, Fredrik;
- Heldin, Carl-Henrik;
- Sölkner, Johann
Publication type:
Article
Computational methods for transcriptome annotation and quantification using RNA-seq.
Published in:
Nature Methods, 2011, v. 8, n. 6, p. 469, doi. 10.1038/nmeth.1613
By:
- Garber, Manuel;
- Grabherr, Manfred G;
- Guttman, Mitchell;
- Trapnell, Cole
Publication type:
Article
Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies).
Published in:
PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0139080
By:
- Delhomme, Nicolas;
- Sundström, Görel;
- Zamani, Neda;
- Lantz, Henrik;
- Lin, Yao-Cheng;
- Hvidsten, Torgeir R.;
- Höppner, Marc P.;
- Jern, Patric;
- Van de Peer, Yves;
- Lundeberg, Joakim;
- Grabherr, Manfred G.;
- Street, Nathaniel R.
Publication type:
Article
Exploiting Nucleotide Composition to Engineer Promoters.
Published in:
PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020136
By:
- Grabherr, Manfred G.;
- Pontiller, Jens;
- Mauceli, Evan;
- Ernst, Wolfgang;
- Baumann, Martina;
- Biagi, Tara;
- Swofford, Ross;
- Russell, Pamela;
- Zody, Michael C.;
- Di Palma, Federica;
- Lindblad-Toh, Kerstin;
- Grabherr, Reingard M.
Publication type:
Article
Characterization of the Giardia intestinalis secretome during interaction with human intestinal epithelial cells: The impact on host cells.
Published in:
PLoS Neglected Tropical Diseases, 2017, v. 11, n. 12, p. 1, doi. 10.1371/journal.pntd.0006120
By:
- Ma’ayeh, Showgy Y.;
- Liu, Jingyi;
- Peirasmaki, Dimitra;
- Hörnaeus, Katarina;
- Bergström Lind, Sara;
- Grabherr, Manfred;
- Bergquist, Jonas;
- Svärd, Staffan G.
Publication type:
Article
High-throughput sequencing of microdissected chromosomal regions.
Published in:
European Journal of Human Genetics, 2010, v. 18, n. 4, p. 457, doi. 10.1038/ejhg.2009.196
By:
- Weise, Anja;
- Timmermann, Bernd;
- Grabherr, Manfred;
- Werber, Martin;
- Heyn, Patricia;
- Kosyakova, Nadezda;
- Liehr, Thomas;
- Neitzel, Heidemarie;
- Konrat, Kateryna;
- Bommer, Christiane;
- Dietrich, Carola;
- Rajab, Anna;
- Reinhardt, Richard;
- Mundlos, Stefan;
- Lindner, Tom H.;
- Hoffmann, Katrin
Publication type:
Article
A universal genomic coordinate translator for comparative genomics.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-227
By:
- Zamani, Neda;
- Sundström, Görel;
- Meadows, Jennifer R. S.;
- Höppner, Marc P.;
- Dainat, Jacques;
- Lantz, Henrik;
- Haas, Brian J.;
- Grabherr, Manfred G.
Publication type:
Article
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium.
Published in:
Nature, 2010, v. 464, n. 7287, p. 367, doi. 10.1038/nature08850
By:
- Ma, Li-Jun;
- van der Does, H. Charlotte;
- Borkovich, Katherine A.;
- Coleman, Jeffrey J.;
- Daboussi, Marie-Josée;
- Di Pietro, Antonio;
- Dufresne, Marie;
- Freitag, Michael;
- Grabherr, Manfred;
- Henrissat, Bernard;
- Houterman, Petra M.;
- Kang, Seogchan;
- Shim, Won-Bo;
- Woloshuk, Charles;
- Xie, Xiaohui;
- Xu, Jin-Rong;
- Antoniw, John;
- Baker, Scott E.;
- Bluhm, Burton H.;
- Breakspear, Andrew
Publication type:
Article
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.
Published in:
Nature, 2009, v. 461, n. 7262, p. 393, doi. 10.1038/nature08358
By:
- Haas, Brian J.;
- Kamoun, Sophien;
- Zody, Michael C.;
- Jiang, Rays H. Y.;
- Handsaker, Robert E.;
- Cano, Liliana M.;
- Grabherr, Manfred;
- Kodira, Chinnappa D.;
- Raffaele, Sylvain;
- Torto-Alalibo, Trudy;
- Bozkurt, Tolga O.;
- Ah-Fong, Audrey M. V.;
- Alvarado, Lucia;
- Anderson, Vicky L.;
- Armstrong, Miles R.;
- Avrova, Anna;
- Baxter, Laura;
- Beynon, Jim;
- Boevink, Petra C.;
- Bollmann, Stephanie R.
Publication type:
Article
Evolution of pathogenicity and sexual reproduction in eight Candida genomes.
Published in:
Nature, 2009, v. 459, n. 7247, p. 657, doi. 10.1038/nature08064
By:
- Butler, Geraldine;
- Rasmussen, Matthew D.;
- Lin, Michael F.;
- Santos, Manuel A. S.;
- Sakthikumar, Sharadha;
- Munro, Carol A.;
- Rheinbay, Esther;
- Grabherr, Manfred;
- Forche, Anja;
- Reedy, Jennifer L.;
- Agrafioti, Ino;
- Arnaud, Martha B.;
- Bates, Steven;
- Brown, Alistair J. P.;
- Brunke, Sascha;
- Costanzo, Maria C.;
- Fitzpatrick, David A.;
- De Groot, Piet W. J.;
- Harris, David;
- Hoyer, Lois L.
Publication type:
Article
Author Correction: Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes.
Published in:
2019
By:
- Diamanti, Klev;
- Cavalli, Marco;
- Pan, Gang;
- Pereira, Maria J.;
- Kumar, Chanchal;
- Skrtic, Stanko;
- Grabherr, Manfred;
- Risérus, Ulf;
- Eriksson, Jan W.;
- Komorowski, Jan;
- Wadelius, Claes
Publication type:
Correction Notice
Intra- and inter-individual metabolic profiling highlights carnitine and lysophosphatidylcholine pathways as key molecular defects in type 2 diabetes.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-45906-5
By:
- Diamanti, Klev;
- Cavalli, Marco;
- Pan, Gang;
- Pereira, Maria J.;
- Kumar, Chanchal;
- Skrtic, Stanko;
- Grabherr, Manfred;
- Risérus, Ulf;
- Eriksson, Jan W.;
- Komorowski, Jan;
- Wadelius, Claes
Publication type:
Article
MindReader : Unsupervised Classification of Electroencephalographic Data.
Published in:
Sensors (14248220), 2023, v. 23, n. 6, p. 2971, doi. 10.3390/s23062971
By:
- Rivas-Carrillo, Salvador Daniel;
- Akkuratov, Evgeny E.;
- Valdez Ruvalcaba, Hector;
- Vargas-Sanchez, Angel;
- Komorowski, Jan;
- San-Juan, Daniel;
- Grabherr, Manfred G.
Publication type:
Article
Flexible Machine Learning Algorithms for Clinical Gait Assessment Tools.
Published in:
Sensors (14248220), 2022, v. 22, n. 13, p. 4957, doi. 10.3390/s22134957
By:
- Greve, Christian;
- Tam, Hobey;
- Grabherr, Manfred;
- Ramesh, Aditya;
- Scheerder, Bart;
- Hijmans, Juha M.
Publication type:
Article
Genome and physiology of the ascomycete filamentous fungus Xeromyces bisporus, the most xerophilic organism isolated to date.
Published in:
Environmental Microbiology, 2015, v. 17, n. 2, p. 496, doi. 10.1111/1462-2920.12596
By:
- Leong, Su‐lin L.;
- Lantz, Henrik;
- Pettersson, Olga V.;
- Frisvad, Jens C.;
- Thrane, Ulf;
- Heipieper, Hermann J.;
- Dijksterhuis, Jan;
- Grabherr, Manfred;
- Pettersson, Mats;
- Tellgren‐Roth, Christian;
- Schnürer, Johan
Publication type:
Article
Comparative omics and feeding manipulations in chicken indicate a shift of the endocrine role of visceral fat towards reproduction.
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1
By:
- Bornelöv, Susanne;
- Seroussi, Eyal;
- Yosefi, Sara;
- Benjamini, Sharon;
- Miyara, Shoval;
- Ruzal, Mark;
- Grabherr, Manfred;
- Rafati, Nima;
- Molin, Anna-Maja;
- Pendavis, Ken;
- Burgess, Shane C.;
- Andersson, Leif;
- Friedman-Einat, Miriam
Publication type:
Article
PiiL: visualization of DNA methylation and gene expression data in gene pathways.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3950-9
By:
- Torabi Moghadam, Behrooz;
- Zamani, Neda;
- Komorowski, Jan;
- Grabherr, Manfred
Publication type:
Article
Evolution of Darwin's finches and their beaks revealed by genome sequencing.
Published in:
Nature, 2015, v. 518, n. 7539, p. 371, doi. 10.1038/nature14181
By:
- Lamichhaney, Sangeet;
- Berglund, Jonas;
- Almén, Markus Sällman;
- Maqbool, Khurram;
- Grabherr, Manfred;
- Martinez-Barrio, Alvaro;
- Promerová, Marta;
- Rubin, Carl-Johan;
- Wang, Chao;
- Zamani, Neda;
- Grant, B. Rosemary;
- Grant, Peter R.;
- Webster, Matthew T.;
- Andersson, Leif
Publication type:
Article
The genomic basis of adaptive evolution in threespine sticklebacks.
Published in:
Nature, 2012, v. 484, n. 7392, p. 55, doi. 10.1038/nature10944
By:
- Jones, Felicity C.;
- Grabherr, Manfred G.;
- Chan, Yingguang Frank;
- Russell, Pamela;
- Mauceli, Evan;
- Johnson, Jeremy;
- Swofford, Ross;
- Pirun, Mono;
- Zody, Michael C.;
- White, Simon;
- Birney, Ewan;
- Searle, Stephen;
- Schmutz, Jeremy;
- Grimwood, Jane;
- Dickson, Mark C.;
- Myers, Richard M.;
- Miller, Craig T.;
- Summers, Brian R.;
- Knecht, Anne K.;
- Brady, Shannon D.
Publication type:
Article
The genome of the green anole lizard and a comparative analysis with birds and mammals.
Published in:
Nature, 2011, v. 477, n. 7366, p. 587, doi. 10.1038/nature10390
By:
- Alföldi, Jessica;
- Di Palma, Federica;
- Grabherr, Manfred;
- Williams, Christina;
- Kong, Lesheng;
- Mauceli, Evan;
- Russell, Pamela;
- Lowe, Craig B.;
- Glor, Richard E.;
- Jaffe, Jacob D.;
- Ray, David A.;
- Boissinot, Stephane;
- Shedlock, Andrew M.;
- Botka, Christopher;
- Castoe, Todd A.;
- Colbourne, John K.;
- Fujita, Matthew K.;
- Moreno, Ricardo Godinez;
- ten Hallers, Boudewijn F.;
- Haussler, David
Publication type:
Article
Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration.
Published in:
Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01964-9
By:
- Elewa, Ahmed;
- Heng Wang;
- Talavera-López, Carlos;
- Joven, Alberto;
- Brito, Gonçalo;
- Kumar, Anoop;
- Hameed, L. Shahul;
- Penrad-Mobayed, May;
- Zeyu Yao;
- Zamani, Neda;
- Abbas, Yamen;
- Abdullayev, Ilgar;
- Sandberg, Rickard;
- Grabherr, Manfred;
- Andersson, Björn;
- Simon, András
Publication type:
Article
Correspondence on Lovell et al.: identification of chicken genes previously assumed to be evolutionarily lost.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1231-1
By:
- Bornelöv, Susanne;
- Seroussi, Eyal;
- Yosefi, Sara;
- Pendavis, Ken;
- Burgess, Shane C.;
- Grabherr, Manfred;
- Friedman-Einat, Miriam;
- Andersson, Leif
Publication type:
Article
EZTraits: A programmable tool to evaluate multi-site deterministic traits.
Published in:
PLoS ONE, 2022, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0259327
By:
- Carland, Matt;
- Pedersen, Haley;
- Bose, Madhuchanda;
- Novković, Biljana;
- Manson, Charles;
- Lahan, Shany;
- Pavlenko, Alex;
- Yazdi, Puya G.;
- Grabherr, Manfred G.
Publication type:
Article
ACES: a machine learning toolbox for clustering analysis and visualization.
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5300-y
By:
- Gao, Jiangning;
- Sundström, Görel;
- Moghadam, Behrooz Torabi;
- Zamani, Neda;
- Grabherr, Manfred G.
Publication type:
Article
Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues.
Published in:
BMC Biotechnology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1472-6750-13-99
By:
- Zaghlool, Ammar;
- Ameur, Adam;
- Nyberg, Linnea;
- Halvardson, Jonatan;
- Grabherr, Manfred;
- Cavelier, Lucia;
- Feuk, Lars
Publication type:
Article
Special Issue Introduction: The Wonders and Mysteries Next Generation Sequencing Technologies Help Reveal.
Published in:
2018
By:
- Grabherr, Manfred G.;
- Kaminska, Bozena;
- Komorowski, Jan
Publication type:
Editorial
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Published in:
Nature Protocols, 2013, v. 8, n. 8, p. 1494, doi. 10.1038/nprot.2013.084
By:
- Haas, Brian J;
- Papanicolaou, Alexie;
- Yassour, Moran;
- Grabherr, Manfred;
- Blood, Philip D;
- Bowden, Joshua;
- Couger, Matthew Brian;
- Eccles, David;
- Li, Bo;
- Lieber, Matthias;
- MacManes, Matthew D;
- Ott, Michael;
- Orvis, Joshua;
- Pochet, Nathalie;
- Strozzi, Francesco;
- Weeks, Nathan;
- Westerman, Rick;
- William, Thomas;
- Dewey, Colin N;
- Henschel, Robert
Publication type:
Article
Unsupervised genome-wide recognition of local relationship patterns.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-347
By:
- Zamani, Neda;
- Russell, Pamela;
- Lantz, Henrik;
- Hoeppner, Marc P.;
- Meadows, Jennifer R. S.;
- Vijay, Nagarjun;
- Mauceli, Evan;
- di Palma, Federica;
- Lindblad-Toh, Kerstin;
- Jern, Patric;
- Grabherr, Manfred G.
Publication type:
Article
SumStatsRehab: an efficient algorithm for GWAS summary statistics assessment and restoration.
Published in:
BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04920-7
By:
- Matushyn, Mykyta;
- Bose, Madhuchanda;
- Mahmoud, Abdallah Amr;
- Cuthbertson, Lewis;
- Tello, Carlos;
- Bircan, Karatuğ Ozan;
- Terpolovsky, Andrew;
- Bamunusinghe, Varuna;
- Khan, Umar;
- Novković, Biljana;
- Grabherr, Manfred G.;
- Yazdi, Puya G.
Publication type:
Article
Whiteboard: a framework for the programmatic visualization of complex biological analyses.
Published in:
Bioinformatics, 2015, v. 31, n. 12, p. 2054, doi. 10.1093/bioinformatics/btv078
By:
- Sundström, Görel;
- Zamani, Neda;
- Grabherr, Manfred G.;
- Mauceli, Evan
Publication type:
Article
Genome-wide synteny through highly sensitive sequence alignment: Satsuma.
Published in:
Bioinformatics, 2010, v. 26, n. 9, p. 1145, doi. 10.1093/bioinformatics/btq102
By:
- Grabherr, Manfred G.;
- Russell, Pamela;
- Meyer, Miriah;
- Mauceli, Evan;
- Alföldi, Jessica;
- Di Palma, Federica;
- Lindblad-Toh, Kerstin;
- Frishman, Dmitrij
Publication type:
Article
Identification of Repetitive Elements in the Genome of Oreochromis niloticus: Tilapia Repeat Masker.
Published in:
Marine Biotechnology, 2010, v. 12, n. 2, p. 121, doi. 10.1007/s10126-009-9236-8
By:
- Shirak, Andrey;
- Grabherr, Manfred;
- Palma, Federica;
- Lindblad-Toh, Kerstin;
- Hulata, Gideon;
- Ron, Micha;
- Kocher, Tom;
- Seroussi, Eyal
Publication type:
Article
Function of Isolated Pancreatic Islets From Patients at Onset of Type 1 Diabetes: Insulin Secretion Can Be Restored After Some Days in a Nondiabetogenic Environment In Vitro.
Published in:
Diabetes, 2015, v. 64, n. 7, p. 2506, doi. 10.2337/db14-1911
By:
- Krogvold, Lars;
- Skog, Oskar;
- Sundström, Görel;
- Edwin, Bjørn;
- Buanes, Trond;
- Hanssen, Kristian F.;
- Ludvigsson, Johnny;
- Grabherr, Manfred;
- Korsgren, Olle;
- Dahl-Jørgensen, Knut
Publication type:
Article
Evolution of the p53-MDM2 pathway.
Published in:
BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-1023-y
By:
- Åberg, Emma;
- Saccoccia, Fulvio;
- Grabherr, Manfred;
- Wai Ying Josefin Ore;
- Jemth, Per;
- Hultqvist, Greta
Publication type:
Article

Found: 42