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Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris).
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- PLoS Genetics, 2019, v. 15, n. 5, p. 1, doi. 10.1371/journal.pgen.1008131
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Parental legacy, demography, and admixture influenced the evolution of the two subgenomes of the tetraploid Capsella bursa-pastoris (Brassicaceae).
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- PLoS Genetics, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pgen.1007949
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- Article
Hitchhiking of Deleterious Alleles and the Cost of Adaptation in Partially Selfing Species.
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- Genetics, 2014, v. 196, n. 1, p. 281, doi. 10.1534/genetics.113.158196
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Surprising Fitness Consequences of GC-Biased Gene Conversion. II. Heterosis.
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- Genetics, 2011, v. 187, n. 1, p. 217, doi. 10.1534/genetics.110.120808
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Surprising Fitness Consequences of GC-Biased Gene Conversion: I. Mutation Load and Inbreeding Depression.
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- Genetics, 2010, v. 185, n. 3, p. 939, doi. 10.1534/genetics.110.116368
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Mating Systems and the Efficacy of Selection at the Molecular Level.
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- Genetics, 2007, v. 177, n. 2, p. 905, doi. 10.1534/genetics.107.073601
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Balancing Selection in the Wild: Testing Population Genetics Theory of Self-Incompatibility in the Rare Species Brassica insularis.
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- Genetics, 2005, v. 171, n. 1, p. 279, doi. 10.1534/genetics.104.035915
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Patterns of Inbreeding Depression and Architecture of the Load in Subdivided Populations.
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- Genetics, 2003, v. 165, n. 4, p. 2193, doi. 10.1093/genetics/165.4.2193
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Lethals in subdivided populations.
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- Genetics Research, 2005, v. 86, n. 1, p. 41, doi. 10.1017/s0016672305007676
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Correction for Glémin and Ronfort (2012).
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- Evolution, 2013, v. 67, n. 11, p. 3381, doi. 10.1111/evo.12198
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ADAPTATION AND MALADAPTATION IN SELFING AND OUTCROSSING SPECIES: NEW MUTATIONS VERSUS STANDING VARIATION.
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- Evolution, 2013, v. 67, n. 1, p. 225, doi. 10.1111/j.1558-5646.2012.01778.x
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COMPLEXITY, PLEIOTROPY, AND THE FITNESS EFFECT OF MUTATIONS.
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- Evolution, 2011, v. 65, n. 6, p. 1559, doi. 10.1111/j.1558-5646.2011.01237.x
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AN INTEGRATIVE TEST OF THE DEAD-END HYPOTHESIS OF SELFING EVOLUTION IN TRITICEAE (POACEAE).
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- Evolution, 2010, v. 64, n. 10, p. 2855, doi. 10.1111/j.1558-5646.2010.01045.x
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HOW ARE DELETERIOUS MUTATIONS PURGED? DRIFT VERSUS NONRANDOM MATING.
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- Evolution, 2003, v. 57, n. 12, p. 2678
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Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication.
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- Plant Journal, 2019, v. 100, n. 1, p. 143, doi. 10.1111/tpj.14435
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Domestication rewired gene expression and nucleotide diversity patterns in tomato.
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- Plant Journal, 2017, v. 91, n. 4, p. 631, doi. 10.1111/tpj.13592
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Evolution of putative barrier loci at an intermediate stage of speciation with gene flow in campions (Silene).
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- Molecular Ecology, 2020, v. 29, n. 18, p. 3511, doi. 10.1111/mec.15571
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The influence of population structure on gene expression and flowering time variation in the ubiquitous weed Capsella bursa-pastoris (Brassicaceae).
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- Molecular Ecology, 2016, v. 25, n. 5, p. 1106, doi. 10.1111/mec.13537
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Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice ( Oryza glaberrima).
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- Molecular Ecology, 2014, v. 23, n. 9, p. 2210, doi. 10.1111/mec.12738
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- Article
Impact of recurrent gene duplication on adaptation of plant genomes.
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- BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2229-14-151
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Analysis of diversity-dependent species evolution using concepts in population genetics.
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- Journal of Mathematical Biology, 2021, v. 82, n. 4, p. 1, doi. 10.1007/s00285-021-01559-5
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The Road to Sorghum Domestication: Evidence From Nucleotide Diversity and Gene Expression Patterns.
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- Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.666075
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Competitive ability depends on mating system and ploidy level across Capsella species.
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- Annals of Botany, 2022, v. 129, n. 6, p. 697, doi. 10.1093/aob/mcac044
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Competitive ability of Capsella species with different mating systems and ploidy levels.
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- Annals of Botany, 2018, v. 121, n. 6, p. 1257, doi. 10.1093/aob/mcy014
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Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-14-S15-S15
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Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics.
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- BMC Bioinformatics, 2006, v. 7, p. 188, doi. 10.1186/1471-2105-7-188
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Diversity in Recombination Hotspot Characteristics and Gene Structure Shape Fine-Scale Recombination Patterns in Plant Genomes.
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- Molecular Biology & Evolution, 2024, v. 41, n. 9, p. 1, doi. 10.1093/molbev/msae183
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Dioecy Is Associated with High Genetic Diversity and Adaptation Rates in the Plant Genus Silene.
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- Molecular Biology & Evolution, 2021, v. 38, n. 3, p. 805, doi. 10.1093/molbev/msaa229
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- Article
Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion.
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- Molecular Biology & Evolution, 2018, v. 35, n. 5, p. 1092, doi. 10.1093/molbev/msy015
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Genetic Diversity and the Efficacy of Purifying Selection across Plant and Animal Species.
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- Molecular Biology & Evolution, 2017, v. 34, n. 6, p. 1417, doi. 10.1093/molbev/msx088
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- Article
Molecular Evolution of Freshwater Snails with Contrasting Mating Systems.
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- Molecular Biology & Evolution, 2015, v. 32, n. 9, p. 2403, doi. 10.1093/molbev/msv121
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The Rate of Molecular Adaptation in a Changing Environment.
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- Molecular Biology & Evolution, 2013, v. 30, n. 6, p. 1292
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Patterns and Evolution of Nucleotide Landscapes in Seed Plants.
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- Plant Cell, 2012, v. 24, n. 4, p. 1379, doi. 10.1105/tpc.111.093674
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- Article
Separating phases of allopolyploid evolution with resynthesized and natural Capsella bursa-pastoris.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.88398
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Crop domestication as a step toward reproductive isolation.
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- American Journal of Botany, 2023, v. 110, n. 7, p. 1, doi. 10.1002/ajb2.16173
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Polygenic selection to a changing optimum under self–fertilisation.
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- PLoS Genetics, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pgen.1011312
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- Article
Hunting for Beneficial Mutations: Conditioning on SIFT Scores When Estimating the Distribution of Fitness Effect of New Mutations.
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- Genome Biology & Evolution, 2022, v. 14, n. 1, p. 1, doi. 10.1093/gbe/evab151
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Introns Structure Patterns of Variation in Nucleotide Composition in Arabidopsis thaliana and Rice Protein-Coding Genes.
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- Genome Biology & Evolution, 2015, v. 7, n. 10, p. 2913, doi. 10.1093/gbe/evv189
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- Article
The Bimodal Distribution of Genic GC Content Is Ancestral to Monocot Species.
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- Genome Biology & Evolution, 2014, v. 7, n. 1, p. 336, doi. 10.1093/gbe/evu278
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- Article
GC-Biased Gene Conversion Impacts Ribosomal DNA Evolution in Vertebrates, Angiosperms, and Other Eukaryotes.
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- Molecular Biology & Evolution, 2011, v. 28, n. 9, p. 2561, doi. 10.1093/molbev/msr079
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- Article
GC-Biased Gene Conversion and Selection Affect GC Content in the Oryza Genus (rice).
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- Molecular Biology & Evolution, 2011, v. 28, n. 9, p. 2695, doi. 10.1093/molbev/msr104
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Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis.
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- Molecular Biology & Evolution, 2008, v. 25, n. 1, p. 120
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Joint inference of evolutionary transitions to self-fertilization and demographic history using whole-genome sequences.
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- eLife, 2023, p. 1, doi. 10.7554/eLife.82384
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Expression pattern of resynthesized allotetraploid Capsella is determined by hybridization, not whole‐genome duplication.
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- New Phytologist, 2023, v. 237, n. 1, p. 339, doi. 10.1111/nph.18542
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How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus.
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- New Phytologist, 2022, v. 236, n. 6, p. 2344, doi. 10.1111/nph.18477
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What does the distribution of fitness effects of new mutations reflect? Insights from plants.
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- New Phytologist, 2022, v. 233, n. 4, p. 1613, doi. 10.1111/nph.17826
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Establishment of local adaptation in partly self-fertilizing populations.
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- Genetics, 2022, v. 220, n. 2, p. 1, doi. 10.1093/genetics/iyab201
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From Drift to Draft: How Much Do Beneficial Mutations Actually Contribute to Predictions of Ohta's Slightly Deleterious Model of Molecular Evolution?
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- Genetics, 2020, v. 214, n. 4, p. 1005, doi. 10.1534/genetics.119.302869
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Estimating the Fitness Effect of Deleterious Mutations During the Two Phases of the Life Cycle: A New Method Applied to the Root-Rot Fungus Heterobasidion parviporum.
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- Genetics, 2019, v. 211, n. 3, p. 963, doi. 10.1534/genetics.118.301855
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Inference of Distribution of Fitness Effects and Proportion of Adaptive Substitutions from Polymorphism Data.
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- Genetics, 2017, v. 207, n. 3, p. 1103, doi. 10.1534/genetics.117.300323
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