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The Intersections of COVID-19, HIV, and Race/Ethnicity: Machine Learning Methods to Identify and Model Risk Factors for Severe COVID-19 in a Large U.S. National Dataset.
Published in:
AIDS & Behavior, 2024, v. 28, p. 5, doi. 10.1007/s10461-024-04266-6
By:
- Kunz, Miranda;
- Rott, Kollin W.;
- Hurwitz, Eric;
- Kunisaki, Ken;
- Sun, Jing;
- Wilkins, Kenneth J.;
- Islam, Jessica Y.;
- Patel, Rena;
- Safo, Sandra E.;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew;
- Girvin, Andrew T.
Publication type:
Article
Vaccination Against SARS-CoV-2 Decreases Risk of Adverse Events in Patients who Develop COVID-19 Following Cancer Surgery.
Published in:
2023
By:
- Verhagen, Nathaniel B.;
- Koerber, Nicolas K.;
- Szabo, Aniko;
- Taylor, Bradley;
- Wainaina, J. Njeri;
- Evans, Douglas B.;
- Kothari, Anai N.;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew;
- Girvin, Andrew T.;
- Walden, Anita;
- Sharathkumar, Anjali A.
Publication type:
Letter
Long COVID risk and pre-COVID vaccination in an EHR-based cohort study from the RECOVER program.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38388-7
By:
- Brannock, M. Daniel;
- Chew, Robert F.;
- Preiss, Alexander J.;
- Hadley, Emily C.;
- Redfield, Signe;
- McMurry, Julie A.;
- Leese, Peter J.;
- Girvin, Andrew T.;
- Crosskey, Miles;
- Zhou, Andrea G.;
- Moffitt, Richard A.;
- Funk, Michele Jonsson;
- Pfaff, Emily R.;
- Haendel, Melissa A.;
- Chute, Christopher G.;
- N3C;
- Stürmer, Til;
- Loomba, Johanna J.;
- Koraishy, Farrukh M.;
- RECOVER Consortia
Publication type:
Article
Characteristics, Outcomes, and Severity Risk Factors Associated With SARS-CoV-2 Infection Among Children in the US National COVID Cohort Collaborative.
Published in:
JAMA Network Open, 2022, v. 5, n. 2, p. e2143151, doi. 10.1001/jamanetworkopen.2021.43151
By:
- Martin, Blake;
- DeWitt, Peter E.;
- Russell, Seth;
- Anand, Adit;
- Bradwell, Katie R.;
- Bremer, Carolyn;
- Gabriel, Davera;
- Girvin, Andrew T.;
- Hajagos, Janos G.;
- McMurry, Julie A.;
- Neumann, Andrew J.;
- Pfaff, Emily R.;
- Walden, Anita;
- Wooldridge, Jacob T.;
- Yoo, Yun Jae;
- Saltz, Joel;
- Gersing, Ken R.;
- Chute, Christopher G.;
- Haendel, Melissa A.;
- Moffitt, Richard
Publication type:
Article
Recurrent PTPRT/JAK2 mutations in lung adenocarcinoma among African Americans.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13732-y
By:
- Mitchell, Khadijah A.;
- Nichols, Noah;
- Tang, Wei;
- Walling, Jennifer;
- Stevenson, Holly;
- Pineda, Marbin;
- Stefanescu, Roxana;
- Edelman, Daniel C.;
- Girvin, Andrew T.;
- Zingone, Adriana;
- Sinha, Sanju;
- Bowman, Elise;
- Rossi, Emily L.;
- Arauz, Rony F.;
- Jack Zhu, Yuelin;
- Lack, Justin;
- Weingartner, Elizabeth;
- Waterfall, Josh;
- Pine, Sharon R.;
- Simmons, John
Publication type:
Article
Impact of Nutritional Status on COVID‐19‐Induced Olfactory Dysfunction.
Published in:
Laryngoscope, 2024, v. 134, n. 10, p. 4338, doi. 10.1002/lary.31660
By:
- Mastoloni, Elizabeth M.;
- French, Evan;
- Coelho, Daniel H.;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred Jerrod;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew;
- Girvin, Andrew T.;
- Walden, Anita;
- Sharathkumar, Anjali A.;
- Amor, Benjamin;
- Bates, Benjamin;
- Hendricks, Brian;
- Patel, Brijesh
Publication type:
Article
Coding long COVID: characterizing a new disease through an ICD-10 lens.
Published in:
BMC Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12916-023-02737-6
By:
- Pfaff, Emily R.;
- Madlock-Brown, Charisse;
- Baratta, John M.;
- Bhatia, Abhishek;
- Davis, Hannah;
- Girvin, Andrew;
- Hill, Elaine;
- Kelly, Elizabeth;
- Kostka, Kristin;
- Loomba, Johanna;
- McMurry, Julie A.;
- Wong, Rachel;
- Bennett, Tellen D.;
- Moffitt, Richard;
- Chute, Christopher G.;
- Haendel, Melissa
Publication type:
Article
De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository.
Published in:
Journal of the American Medical Informatics Association, 2023, v. 30, n. 7, p. 1305, doi. 10.1093/jamia/ocad077
By:
- Pfaff, Emily R;
- Girvin, Andrew T;
- Crosskey, Miles;
- Gangireddy, Srushti;
- Master, Hiral;
- Wei, Wei-Qi;
- Kerchberger, V Eric;
- Weiner, Mark;
- Harris, Paul A;
- Basford, Melissa;
- Lunt, Chris;
- Chute, Christopher G;
- Moffitt, Richard A;
- Haendel, Melissa;
- Consortia, N3C and RECOVER
Publication type:
Article
Clinical encounter heterogeneity and methods for resolving in networked EHR data: a study from N3C and RECOVER programs.
Published in:
Journal of the American Medical Informatics Association, 2023, v. 30, n. 6, p. 1125, doi. 10.1093/jamia/ocad057
By:
- Leese, Peter;
- Anand, Adit;
- Girvin, Andrew;
- Manna, Amin;
- Patel, Saaya;
- Yoo, Yun Jae;
- Wong, Rachel;
- Haendel, Melissa;
- Chute, Christopher G;
- Bennett, Tellen;
- Hajagos, Janos;
- Pfaff, Emily;
- Moffitt, Richard
Publication type:
Article
Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset.
Published in:
Journal of the American Medical Informatics Association, 2022, v. 29, n. 7, p. 1172, doi. 10.1093/jamia/ocac054
By:
- Bradwell, Katie R;
- Wooldridge, Jacob T;
- Amor, Benjamin;
- Bennett, Tellen D;
- Anand, Adit;
- Bremer, Carolyn;
- Yoo, Yun Jae;
- Qian, Zhenglong;
- Johnson, Steven G;
- Pfaff, Emily R;
- Girvin, Andrew T;
- Manna, Amin;
- Niehaus, Emily A;
- Hong, Stephanie S;
- Zhang, Xiaohan Tanner;
- Zhu, Richard L;
- Bissell, Mark;
- Qureshi, Nabeel;
- Saltz, Joel;
- Haendel, Melissa A
Publication type:
Article
Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative.
Published in:
2022
By:
- Pfaff, Emily R;
- Girvin, Andrew T;
- Gabriel, Davera L;
- Kostka, Kristin;
- Morris, Michele;
- Palchuk, Matvey B;
- Lehmann, Harold P;
- Amor, Benjamin;
- Bissell, Mark;
- Bradwell, Katie R;
- Gold, Sigfried;
- Hong, Stephanie S;
- Loomba, Johanna;
- Manna, Amin;
- McMurry, Julie A;
- Niehaus, Emily;
- Qureshi, Nabeel;
- Walden, Anita;
- Zhang, Xiaohan Tanner;
- Zhu, Richard L
Publication type:
journal article
Interleukin‐2 mutants with enhanced α‐receptor subunit binding affinity.
Published in:
Protein Engineering, 2003, v. 16, n. 12, p. 1081, doi. 10.1093/protein/gzg111
By:
- Balaji M. Rao;
- Andrew T. Girvin;
- Thomas Ciardelli;
- Douglas A. Lauffenburger;
- K.Dane Wittrup
Publication type:
Article
Potential drug–drug interactions among U.S. adults treated with nirmatrelvir/ritonavir: A cross‐sectional study of the National Covid Cohort Collaborative (N3C).
Published in:
Pharmacotherapy, 2023, v. 43, n. 12, p. 1251, doi. 10.1002/phar.2860
By:
- Xiao, Xuya;
- Mehta, Hemalkumar B.;
- Curran, Jill;
- Garibaldi, Brian T.;
- Alexander, G. Caleb;
- Wilcox, Adam B.;
- Lee, Adam M.;
- Graves, Alexis;
- Anzalone, Alfred;
- Manna, Amin;
- Saha, Amit;
- Olex, Amy;
- Zhou, Andrea;
- Williams, Andrew E.;
- Southerland, Andrew;
- Girvin, Andrew T.;
- Walden, Anita;
- Sharathkumar, Anjali A.;
- Amor, Benjamin;
- Bates, Benjamin
Publication type:
Article
Clinical Characterization and Prediction of Clinical Severity of SARS-CoV-2 Infection Among US Adults Using Data From the US National COVID Cohort Collaborative.
Published in:
JAMA Network Open, 2021, v. 4, n. 7, p. e2116901, doi. 10.1001/jamanetworkopen.2021.16901
By:
- Bennett, Tellen D.;
- Moffitt, Richard A.;
- Hajagos, Janos G.;
- Amor, Benjamin;
- Anand, Adit;
- Bissell, Mark M.;
- Bradwell, Katie Rebecca;
- Bremer, Carolyn;
- Byrd, James Brian;
- Denham, Alina;
- DeWitt, Peter E.;
- Gabriel, Davera;
- Garibaldi, Brian T.;
- Girvin, Andrew T.;
- Guinney, Justin;
- Hill, Elaine L.;
- Hong, Stephanie S.;
- Jimenez, Hunter;
- Kavuluru, Ramakanth;
- Kostka, Kristin
Publication type:
Article
Author Correction: Recurrent PTPRT/JAK2 mutations in lung adenocarcinoma among African Americans.
Published in:
2020
By:
- Mitchell, Khadijah A.;
- Nichols, Noah;
- Tang, Wei;
- Walling, Jennifer;
- Stevenson, Holly;
- Pineda, Marbin;
- Stefanescu, Roxana;
- Edelman, Daniel C.;
- Girvin, Andrew T.;
- Zingone, Adriana;
- Sinha, Sanju;
- Bowman, Elise;
- Rossi, Emily L.;
- Arauz, Rony F.;
- Zhu, Yuelin Jack;
- Lack, Justin;
- Weingartner, Elizabeth;
- Waterfall, Joshua J.;
- Pine, Sharon R.;
- Simmons, John
Publication type:
Correction Notice

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