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Impact and characterization of serial structural variations across humans and great apes.
- Published in:
- Nature Communications, 2024, p. 1, doi. 10.1038/s41467-024-52027-9
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- Publication type:
- Article
Distinct genomic aberrations associated with ERG rearranged prostate cancer.
- Published in:
- Genes, Chromosomes & Cancer, 2009, v. 48, n. 4, p. 366, doi. 10.1002/gcc.20647
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- Article
Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods.
- Published in:
- Scientific Reports, 2015, p. 14493, doi. 10.1038/srep14493
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- Article
Sixty years of genome biology.
- Published in:
- Genome Biology, 2013, v. 14, n. 4, p. 113, doi. 10.1186/gb-2013-14-4-113
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- Publication type:
- Article
The GENCODE pseudogene resource.
- Published in:
- Genome Biology, 2012, v. 13, n. 9, p. 1, doi. 10.1186/gb-2012-13-9-r51
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- Publication type:
- Article
Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors.
- Published in:
- Genome Biology, 2011, v. 12, n. 11, p. 1, doi. 10.1186/gb-2011-12-11-r111
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- Publication type:
- Article
The real cost of sequencing: higher than you think!
- Published in:
- Genome Biology, 2011, v. 12, n. 8, p. 125, doi. 10.1186/gb-2011-12-8-125
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- Publication type:
- Article
The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics.
- Published in:
- Genome Biology, 2011, v. 12, n. 3, p. 1, doi. 10.1186/gb-2011-12-3-r32
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- Publication type:
- Article
Molecular sampling of prostate cancer: a dilemma for predicting disease progression.
- Published in:
- BMC Medical Genomics, 2010, v. 3, p. 8, doi. 10.1186/1755-8794-3-8
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- Publication type:
- Article
Annotating non-coding regions of the genome.
- Published in:
- 2010
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- Publication type:
- journal article
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00050-4
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- Publication type:
- Article
Erratum: Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.
- Published in:
- Nature Communications, 2015, v. 6, n. 9, p. 8389, doi. 10.1038/ncomms9389
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- Publication type:
- Article
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.
- Published in:
- Nature Communications, 2015, v. 6, n. 6, p. 7256, doi. 10.1038/ncomms8256
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- Publication type:
- Article
SVFX: a machine learning framework to quantify the pathogenicity of structural variants.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02178-x
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- Publication type:
- Article
Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity.
- Published in:
- BMC Genomics, 2009, v. 10, p. 480, doi. 10.1186/1471-2164-10-480
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- Publication type:
- Article
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing.
- Published in:
- BMC Genomics, 2006, v. 7, p. 216, doi. 10.1186/1471-2164-7-216
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- Publication type:
- Article
Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 539, doi. 10.1186/1471-2105-11-539
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- Publication type:
- Article
MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 243, doi. 10.1186/1471-2105-11-243
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- Publication type:
- Article
Architecture of the human regulatory network derived from ENCODE data.
- Published in:
- Nature, 2012, v. 489, n. 7414, p. 91, doi. 10.1038/nature11245
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- Publication type:
- Article
Unlocking the secrets of the genome.
- Published in:
- Nature, 2009, v. 459, n. 7249, p. 927, doi. 10.1038/459927a
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- Publication type:
- Article
Integration of protein motions with molecular networks reveals different mechanisms for permanent and transient interactions.
- Published in:
- Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 10, p. 1745, doi. 10.1002/pro.710
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- Publication type:
- Article
StoneHinge: Hinge prediction by network analysis of individual protein structures.
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- Protein Science: A Publication of the Protein Society, 2009, v. 18, n. 2, p. 359, doi. 10.1002/pro.38
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- Publication type:
- Article
Genomic Analysis of the Hydrocarbon-Producing, Cellulolytic, Endophytic Fungus Ascocoryne sarcoides.
- Published in:
- PLoS Genetics, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pgen.1002558
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- Publication type:
- Article
Diverse Roles and Interactions of the SWI/SNF Chromatin Remodeling Complex Revealed Using Global Approaches.
- Published in:
- PLoS Genetics, 2011, v. 7, n. 3, p. 1, doi. 10.1371/journal.pgen.1002008
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- Publication type:
- Article
High-Resolution Copy-Number Variation Map Reflects Human Olfactory Receptor Diversity and Evolution.
- Published in:
- PLoS Genetics, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pgen.1000249
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- Publication type:
- Article
Rewiring of Transcriptional Regulatory Networks: Hierarchy, Rather than Connectivity, Better Reflects the Importance of Regulators.
- Published in:
- Science Signaling, 2010, v. 3, n. 146, p. 1, doi. 10.1126/scisignal.2001014
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- Publication type:
- Article
Understanding Modularity in Molecular Networks Requires Dynamics.
- Published in:
- Science Signaling, 2009, v. 2, n. 81, p. 1, doi. 10.1126/scisignal.281pe44
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- Publication type:
- Article
Performance comparison of whole-genome sequencing platforms.
- Published in:
- Nature Biotechnology, 2012, v. 30, n. 6, p. 562, doi. 10.1038/nbt0612-562e
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- Publication type:
- Article
Detecting and annotating genetic variations using the HugeSeq pipeline.
- Published in:
- Nature Biotechnology, 2012, v. 30, n. 3, p. 226, doi. 10.1038/nbt.2134
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- Publication type:
- Article
Performance comparison of whole-genome sequencing platforms.
- Published in:
- Nature Biotechnology, 2012, v. 30, n. 1, p. 78, doi. 10.1038/nbt.2065
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- Publication type:
- Article
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 1, p. 47, doi. 10.1038/nbt.1600
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- Publication type:
- Article
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 1, p. 66, doi. 10.1038/nbt.1518
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- Publication type:
- Article
An integrated approach for finding overlooked genes in yeast.
- Published in:
- Nature Biotechnology, 2002, v. 20, n. 1, p. 58, doi. 10.1038/nbt0102-58
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- Publication type:
- Article
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. S5, doi. 10.1186/1471-2105-8-S3-S5
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- Publication type:
- Article
Publishing perishing? Towards tomorrow's information architecture.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 17, doi. 10.1186/1471-2105-8-17
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- Publication type:
- Article
Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004132
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- Publication type:
- Article
Measuring the Evolutionary Rewiring of Biological Networks.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1371/journal.pcbi.1001050
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- Publication type:
- Article
Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets.
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- PLoS Computational Biology, 2010, v. 6, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000755
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- Publication type:
- Article
Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000730
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- Publication type:
- Article
Getting Started in Gene Orthology and Functional Analysis.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000703
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- Publication type:
- Article
Small RNAs Originated from Pseudogenes: cis- or trans- Acting?
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000449
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- Publication type:
- Article
Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000432
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- Publication type:
- Article
Getting Started in Text Mining: Part Two6.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000411
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- Publication type:
- Article
Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000413
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- Publication type:
- Article
MolLM: a unified language model for integrating biomedical text with 2D and 3D molecular representations.
- Published in:
- Bioinformatics, 2024, v. 40, p. i357, doi. 10.1093/bioinformatics/btae260
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- Publication type:
- Article
BioCoder: a benchmark for bioinformatics code generation with large language models.
- Published in:
- Bioinformatics, 2024, v. 40, p. i266, doi. 10.1093/bioinformatics/btae230
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- Publication type:
- Article
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.
- Published in:
- Journal of Extracellular Vesicles, 2015, v. 4, p. 1, doi. 10.3402/jev.v4.27497
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- Publication type:
- Article
Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins.
- Published in:
- PLoS Biology, 2009, v. 7, n. 10, p. 1, doi. 10.1371/journal.pbio.1000218
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- Publication type:
- Article
Comparative analysis of the transcriptome across distant species.
- Published in:
- Nature, 2014, v. 512, n. 7515, p. 445, doi. 10.1038/nature13424
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- Publication type:
- Article
Extending gene ontology in the context of extracellular RNA and vesicle communication.
- Published in:
- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0061-5
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- Publication type:
- Article