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Chromosome-encoded IpaH ubiquitin ligases indicate non-human enteroinvasive Escherichia.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-10827-3
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- Article
A hierarchy in clusters of cephalopod mRNA editing sites.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-07460-5
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- Article
Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.
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- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00195
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- Article
Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01343
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- Article
Differential Impact of Hexuronate Regulators ExuR and UxuR on the Escherichia coli Proteome.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 15, p. 8379, doi. 10.3390/ijms23158379
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- Article
Recapitulation of the embryonic transcriptional program in holometabolous insect pupae.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-22188-y
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- Article
The Influence of Kerosene on Microbiomes of Diverse Soils.
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- Life (2075-1729), 2022, v. 12, n. 2, p. N.PAG, doi. 10.3390/life12020221
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- Article
Application of sorting and next generation sequencing to study 5'-UTR influence on translation efficiency in Escherichia coli.
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- Nucleic Acids Research, 2017, v. 45, n. 6, p. 3487, doi. 10.1093/nar/gkw1141
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- Article
Functional diversification of ROK-family transcriptional regulators of sugar catabolism in the Thermotogae phylum.
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- Nucleic Acids Research, 2013, v. 41, n. 2, p. 790, doi. 10.1093/nar/gks1184
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- Article
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W299, doi. 10.1093/nar/gkq531
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- Article
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.
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- Nucleic Acids Research, 2010, v. 38, p. D111, doi. 10.1093/nar/gkp894
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- Article
Modulation of alternative splicing by long-range RNA structures in Drosophila.
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- Nucleic Acids Research, 2009, v. 37, n. 14, p. 4533, doi. 10.1093/nar/gkp407
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- Article
Engineering transcription factors with novel DNA-binding specificity using comparative genomics.
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- Nucleic Acids Research, 2009, v. 37, n. 8, p. 2493, doi. 10.1093/nar/gkp079
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- Article
Systematic prediction of control proteins and their DNA binding sites.
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- Nucleic Acids Research, 2009, v. 37, n. 2, p. 441, doi. 10.1093/nar/gkn931
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- Article
Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon.
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- Nucleic Acids Research, 2008, v. 36, n. 6, p. 2032, doi. 10.1093/nar/gkn046
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- Publication type:
- Article
RegTransBase—a database of regulatory sequences and interactions in a wide range of prokaryotic genomes.
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- Nucleic Acids Research, 2007, v. 35, p. d407, doi. 10.1093/nar/gkl865
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- Article
Influence of the spacer region between the Shine–Dalgarno box and the start codon for fine‐tuning of the translation efficiency in Escherichia coli.
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- Microbial Biotechnology, 2020, v. 13, n. 4, p. 1254, doi. 10.1111/1751-7915.13561
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- Article
Micro-evolution of three Streptococcus species: selection, antigenic variation, and horizontal gene inflow.
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- BMC Evolutionary Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12862-019-1403-6
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- Article
Identification of replication origins in prokaryotic genomes.
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- Briefings in Bioinformatics, 2008, v. 9, n. 5, p. 376, doi. 10.1093/bib/bbn031
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- Article
Exact mapping of prokaryotic gene starts.
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- Briefings in Bioinformatics, 2002, v. 3, n. 2, p. 181, doi. 10.1093/bib/3.2.181
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- Article
Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.
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- Scientific Reports, 2016, p. 20768, doi. 10.1038/srep20768
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- Article
Low-molecular-weight post-translationally modified microcins.
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- Molecular Microbiology, 2007, v. 65, n. 6, p. 1380, doi. 10.1111/j.1365-2958.2007.05874.x
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- Article
Low-molecular-weight post-translationally modified microcins.
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- 2007
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- Erratum
Transcriptional regulation of transport and utilization systems for hexuronides, hexuronates and hexonates in gamma purple bacteria.
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- Molecular Microbiology, 2000, v. 38, n. 4, p. 673, doi. 10.1046/j.1365-2958.2000.02115.x
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- Article
GntR Family of Bacterial Transcription Factors and Their DNA Binding Motifs: Structure, Positioning and Co-Evolution.
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- PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0132618
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- Article
Comparative Genomics of Transcriptional Regulation of Methionine Metabolism in Proteobacteria.
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- PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0113714
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- Article
Genomics of Sponge-Associated <i>Streptomyces</i> spp. Closely Related to <i>Streptomyces albus</i> J1074: Insights into Marine Adaptation and Secondary Metabolite Biosynthesis Potential.
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- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096719
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- Article
Comparative Genomics of CytR, an Unusual Member of the LacI Family of Transcription Factors.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044194
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- Article
Glutamine versus Ammonia Utilization in the NAD Synthetase Family.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039115
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- Article
Spatial Proximity and Similarity of the Epigenetic State of Genome Domains.
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- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0033947
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- Article
Amino acid residues that determine functional specificity of NADP- and NAD-dependent isocitrate and isopropylmalate dehydrogenases.
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- Proteins, 2006, v. 64, n. 4, p. 1001, doi. 10.1002/prot.21027
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- Article
Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2602-9
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- Article
Sequence-derived structural features driving proteolytic processing.
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- Proteomics, 2014, v. 14, n. 1, p. 42, doi. 10.1002/pmic.201300416
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- Article
Nuclear lamina integrity is required for proper spatial organization of chromatin in Drosophila.
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- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09185-y
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- Article
Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization.
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- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-78
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- Article
Computational analysis of splicing errors and mutations in human transcripts.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-13
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- Article
Fast rate of evolution in alternatively spliced coding regions of mammalian genes.
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- BMC Genomics, 2006, v. 7, p. 84, doi. 10.1186/1471-2164-7-84
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- Article
Biases in read coverage demonstrated by interlaboratory and interplatform comparison of 117 mRNA and genome sequencing experiments.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 6, p. 1, doi. 10.1186/1471-2105-13-S6-S4
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- Article
No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions.
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- BMC Bioinformatics, 2004, v. 5, p. 41, doi. 10.1186/1471-2105-5-41
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- Article
Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data.
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- PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009546
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- Article
Simplification of Ribosomes in Bacteria with Tiny Genomes.
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- Molecular Biology & Evolution, 2021, v. 38, n. 1, p. 58, doi. 10.1093/molbev/msaa184
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- Article
Some alphabets easily beat Russian letter count.
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- 2008
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- Publication type:
- Letter
Common and specific amino acid residues in the prokaryotic polypeptide release factors RF1 and RF2: possible functional implications.
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- Nucleic Acids Research, 2005, v. 33, n. 16, p. 5226, doi. 10.1093/nar/gki841
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- Article
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w424, doi. 10.1093/nar/gkh391
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- Publication type:
- Article
Comparative genomics of the methionine metabolism in Gram-positive bacteria: a variety of regulatory systems.
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- Nucleic Acids Research, 2004, v. 32, n. 11, p. 3340, doi. 10.1093/nar/gkh659
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- Article
Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?
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- Nucleic Acids Research, 2003, v. 31, n. 23, p. 6748, doi. 10.1093/nar/gkg900
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- Article
Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation.
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- Nucleic Acids Research, 2002, v. 30, n. 14, p. 3141, doi. 10.1093/nar/gkf433
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- Article
Structural analysis of conserved base pairs in protein–DNA complexes.
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- Nucleic Acids Research, 2002, v. 30, n. 7, p. 1704
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- Publication type:
- Article
SELEX_DB: a database on in vitro selected oligomers adapted for recognizing natural sites and for analyzing both SNPs and site-directed mutagenesis data.
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- Nucleic Acids Research, 2002, v. 30, n. 1, p. 195
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- Publication type:
- Article
Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing.
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- Nucleic Acids Research, 2001, v. 29, n. 11, p. 2338, doi. 10.1093/nar/29.11.2338
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- Article