OpenURL Connection Search

Select item for more details and to access through your institution.

DNA Data Bank of Japan.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D25, doi. 10.1093/nar/gkw1001
By:
- Jun Mashima;
- Yuichi Kodama;
- Takatomo Fujisawa;
- Toshiaki Katayama;
- Yoshihiro Okuda;
- Eli Kaminuma;
- Osamu Ogasawara;
- Kousaku Okubo;
- Yasukazu Nakamura;
- Toshihisa Takagi
Publication type:
Article
CyanoBase: a large-scale update on its 20th anniversary.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D551, doi. 10.1093/nar/gkw1131
By:
- Takatomo Fujisawa;
- Rei Narikawa;
- Shin-ichi Maeda;
- Satoru Watanabe;
- Yu Kanesaki;
- Koichi Kobayashi;
- Jiro Nomata;
- Mitsumasa Hanaoka;
- Mai Watanabe;
- Shigeki Ehira;
- Eiji Suzuki;
- Koichiro Awai;
- Yasukazu Nakamura
Publication type:
Article
DNA data bank of Japan (DDBJ) progress report.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 1, p. D51, doi. 10.1093/nar/gkv1105
By:
- Jun Mashima;
- Yuichi Kodama;
- Takehide Kosuge;
- Takatomo Fujisawa;
- Toshiaki Katayama;
- Hideki Nagasaki;
- Yoshihiro Okuda;
- Eli Kaminuma;
- Osamu Ogasawara;
- Kousaku Okubo;
- Yasukazu Nakamura;
- Toshihisa Takagi
Publication type:
Article
The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.
Published in:
Nucleic Acids Research, 2015, v. 43, n. D1, p. D18, doi. 10.1093/nar/gku1120
By:
- Kodama, Yuichi;
- Mashima, Jun;
- Kosuge, Takehide;
- Katayama, Toshiaki;
- Fujisawa, Takatomo;
- Kaminuma, Eli;
- Ogasawara, Osamu;
- Okubo, Kousaku;
- Takagi, Toshihisa;
- Nakamura, Yasukazu
Publication type:
Article
CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D666, doi. 10.1093/nar/gkt1145
By:
- Fujisawa, Takatomo;
- Okamoto, Shinobu;
- Katayama, Toshiaki;
- Nakao, Mitsuteru;
- Yoshimura, Hidehisa;
- Kajiya-Kanegae, Hiromi;
- Yamamoto, Sumiko;
- Yano, Chiyoko;
- Yanaka, Yuka;
- Maita, Hiroko;
- Kaneko, Takakazu;
- Tabata, Satoshi;
- Nakamura, Yasukazu
Publication type:
Article
DDBJ progress report: a new submission system for leading to a correct annotation.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D44, doi. 10.1093/nar/gkt1066
By:
- Kosuge, Takehide;
- Mashima, Jun;
- Kodama, Yuichi;
- Fujisawa, Takatomo;
- Kaminuma, Eli;
- Ogasawara, Osamu;
- Okubo, Kousaku;
- Takagi, Toshihisa;
- Nakamura, Yasukazu
Publication type:
Article
H2DB: a heritability database across multiple species by annotating trait-associated genomic loci.
Published in:
Nucleic Acids Research, 2013, v. 41, p. D880, doi. 10.1093/nar/gks1216
By:
- Eli Kaminuma;
- Takatomo Fujisawa;
- Yasuhiro Tanizawa;
- Naoko Sakamoto;
- Nori Kurata;
- Tokurou Shimizu;
- Yasukazu Nakamura
Publication type:
Article
CyanoBase: the cyanobacteria genome database update 2010.
Published in:
Nucleic Acids Research, 2010, v. 38, p. D379, doi. 10.1093/nar/gkp915
By:
- Mitsuteru Nakao;
- Shinobu Okamoto;
- Mitsuyo Kohara;
- Tsunakazu Fujishiro;
- Takatomo Fujisawa;
- Shusei Sato;
- Satoshi Tabata;
- Takakazu Kaneko;
- Yasukazu Nakamura
Publication type:
Article
Characterization of Genes Encoding Multi-domain Proteins in the Genome of the Filamentous Nitrogen-fixing Cyanobacterium Anabaena sp. Strain PCC 7120.
Published in:
DNA Research, 2001, v. 8, n. 6, p. 271, doi. 10.1093/dnares/8.6.271
By:
- Ohmori, Masayuki;
- Ikeuchi, Masahiko;
- Sato, Naoki;
- Wolk, Peter;
- Kaneko, Takakazu;
- Ogawa, Teruo;
- Kanehisa, Minoru;
- Goto, Susumu;
- Kawashima, Shuichi;
- Okamoto, Shinobu;
- Yoshimura, Hidehisa;
- Katoh, Hiroshi;
- Fujisawa, Takatomo;
- Ehira, Shigeki;
- Kamei, Ayako;
- Yoshihara, Shizue;
- Narikawa, Rei;
- Tabata, Satoshi
Publication type:
Article
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0067-z
By:
- Bolleman, Jerven T.;
- Mungall, Christopher J.;
- Strozzi, Francesco;
- Baran, Joachim;
- Dumontier, Michel;
- Bonnal, Raoul J. P.;
- Buels, Robert;
- Hoehndorf, Robert;
- Fujisawa, Takatomo;
- Katayama, Toshiaki;
- Cock, Peter J. A.
Publication type:
Article
Implementation of linked data in the life sciences at BioHackathon 2011.
Published in:
Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/2041-1480-6-3
By:
- Aoki-Kinoshita, Kiyoko F.;
- Kinjo, Akira R.;
- Mizuki Morita;
- Yoshinobu Igarashi;
- Yi-an Chen;
- Yasumasa Shigemoto;
- Takatomo Fujisawa;
- Yukie Akune;
- Takeo Katoda;
- Anna Kokubu;
- Takaaki Mori;
- Mitsuteru Nakao;
- Shuichi Kawashima;
- Shinobu Okamoto;
- Toshiaki Katayama;
- Soichi Ogishima
Publication type:
Article
Implementation of linked data in the life sciences at BioHackathon 2011.
Published in:
Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 38, doi. 10.1186/2041-1480-6-3
By:
- Aoki-Kinoshita, Kiyoko F.;
- Kinjo, Akira R.;
- Mizuki Morita;
- Yoshinobu Igarashi;
- Yi-an Chen;
- Yasumasa Shigemoto;
- Takatomo Fujisawa;
- Yukie Akune;
- Takeo Katoda;
- Anna Kokubu;
- Takaaki Mori;
- Mitsuteru Nakao;
- Shuichi Kawashima;
- Shinobu Okamoto;
- Toshiaki Katayama;
- Soichi Ogishima
Publication type:
Article
TogoGenome/TogoStanza: modularized Semantic Web genome database.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/bay132
By:
- Katayama, Toshiaki;
- Kawashima, Shuichi;
- Okamoto, Shinobu;
- Moriya, Yuki;
- Chiba, Hirokazu;
- Naito, Yuki;
- Fujisawa, Takatomo;
- Mori, Hiroshi;
- Takagi, Toshihisa
Publication type:
Article
Loss of Cytochrome cM Stimulates Cyanobacterial Heterotrophic Growth in the Dark.
Published in:
Plant & Cell Physiology, 2015, v. 56, n. 2, p. 334, doi. 10.1093/pcp/pcu165
By:
- Hiraide, Yuto;
- Oshima, Kenshiro;
- Fujisawa, Takatomo;
- Uesaka, Kazuma;
- Hirose, Yuu;
- Tsujimoto, Ryoma;
- Yamamoto, Haruki;
- Okamoto, Shinobu;
- Nakamura, Yasukazu;
- Terauchi, Kazuki;
- Omata, Tatsuo;
- Ihara, Kunio;
- Hattori, Masahira;
- Fujita, Yuichi
Publication type:
Article
Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.
Published in:
Environmental Microbiology, 2006, v. 8, n. 2, p. 334, doi. 10.1111/j.1462-2920.2005.00899.x
By:
- Sekine, Mitsuo;
- Tanikawa, Satoshi;
- Omata, Seiha;
- Saito, Mika;
- Fujisawa, Takatomo;
- Tsukatani, Naofumi;
- Tajima, Takahisa;
- Sekigawa, Tomohiro;
- Kosugi, Hiroki;
- Matsuo, Yasunori;
- Nishiko, Rika;
- Imamura, Kohsuke;
- Ito, Mio;
- Narita, Hitomi;
- Tago, Shinichi;
- Fujita, Nobuyuki;
- Harayama, Shigeaki
Publication type:
Article
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.
Published in:
Nature Communications, 2014, v. 5, n. 5, p. 3978, doi. 10.1038/ncomms4978
By:
- Hori, Koichi;
- Maruyama, Fumito;
- Fujisawa, Takatomo;
- Togashi, Tomoaki;
- Yamamoto, Nozomi;
- Seo, Mitsunori;
- Sato, Syusei;
- Yamada, Takuji;
- Mori, Hiroshi;
- Tajima, Naoyuki;
- Moriyama, Takashi;
- Ikeuchi, Masahiko;
- Watanabe, Mai;
- Wada, Hajime;
- Kobayashi, Koichi;
- Saito, Masakazu;
- Masuda, Tatsuru;
- Sasaki-Sekimoto, Yuko;
- Mashiguchi, Kiyoshi;
- Awai, Koichiro
Publication type:
Article
SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan.
Published in:
Genes & Genetic Systems, 2023, v. 98, n. 5, p. 221, doi. 10.1266/ggs.23-00085
By:
- So Nakagawa;
- Toshiaki Katayama;
- Lihua Jin;
- Jiaqi Wu;
- Kirill Kryukov;
- Rise Oyachi;
- Junko S Takeuchi;
- Takatomo Fujisawa;
- Satomi Asano;
- Momoka Komatsu;
- Jun-ichi Onami;
- Takashi Abe;
- Masanori Arita
Publication type:
Article
DDBJ Data Analysis Challenge: a machine learning competition to predict Arabidopsis chromatin feature annotations from DNA sequences.
Published in:
Genes & Genetic Systems, 2020, v. 95, n. 1, p. 43, doi. 10.1266/ggs.19-00034
By:
- Eli Kaminuma;
- Yukino Baba;
- Masahiro Mochizuki;
- Hirotaka Matsumoto;
- Haruka Ozaki;
- Toshitsugu Okayama;
- Takuya Kato;
- Shinya Oki;
- Takatomo Fujisawa;
- Yasukazu Nakamura;
- Masanori Arita;
- Osamu Ogasawara;
- Hisashi Kashima;
- Toshihisa Takagi
Publication type:
Article
DNApod: DNA polymorphism annotation database from next-generation sequence read archives.
Published in:
PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0172269
By:
- Mochizuki, Takako;
- Tanizawa, Yasuhiro;
- Fujisawa, Takatomo;
- Ohta, Tazro;
- Nikoh, Naruo;
- Shimizu, Tokurou;
- Toyoda, Atsushi;
- Fujiyama, Asao;
- Kurata, Nori;
- Nagasaki, Hideki;
- Kaminuma, Eli;
- Nakamura, Yasukazu
Publication type:
Article
The NBDC-DDBJ imputation server facilitates the use of controlled access reference panel datasets in Japan.
Published in:
2022
By:
- Hachiya, Tsuyoshi;
- Ishii, Manabu;
- Kawai, Yosuke;
- Khor, Seik-Soon;
- Kawashima, Minae;
- Toyo-Oka, Licht;
- Mitsuhashi, Nobutaka;
- Fukuda, Asami;
- Kodama, Yuichi;
- Fujisawa, Takatomo;
- Tokunaga, Katsushi;
- Takagi, Toshihisa
Publication type:
Product Review
DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D67, doi. 10.1093/nar/gkad1046
By:
- Ara, Takeshi;
- Kodama, Yuichi;
- Tokimatsu, Toshiaki;
- Fukuda, Asami;
- Kosuge, Takehide;
- Mashima, Jun;
- Tanizawa, Yasuhiro;
- Tanjo, Tomoya;
- Ogasawara, Osamu;
- Fujisawa, Takatomo;
- Nakamura, Yasukazu;
- Arita, Masanori
Publication type:
Article
DNA Data Bank of Japan (DDBJ) update report 2022.
Published in:
Nucleic Acids Research, 2023, v. 51, n. D1, p. D101, doi. 10.1093/nar/gkac1083
By:
- Tanizawa, Yasuhiro;
- Fujisawa, Takatomo;
- Kodama, Yuichi;
- Kosuge, Takehide;
- Mashima, Jun;
- Tanjo, Tomoya;
- Nakamura, Yasukazu
Publication type:
Article
DNA Data Bank of Japan (DDBJ) update report 2021.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D102, doi. 10.1093/nar/gkab995
By:
- Okido, Toshihisa;
- Kodama, Yuichi;
- Mashima, Jun;
- Kosuge, Takehide;
- Fujisawa, Takatomo;
- Ogasawara, Osamu
Publication type:
Article
DDBJ update: streamlining submission and access of human data.
Published in:
Nucleic Acids Research, 2021, v. 49, n. D1, p. D71, doi. 10.1093/nar/gkaa982
By:
- Fukuda, Asami;
- Kodama, Yuichi;
- Mashima, Jun;
- Fujisawa, Takatomo;
- Ogasawara, Osamu
Publication type:
Article
DDBJ Database updates and computational infrastructure enhancement.
Published in:
Nucleic Acids Research, 2020, v. 48, n. D1, p. D45, doi. 10.1093/nar/gkz982
By:
- Ogasawara, Osamu;
- Kodama, Yuichi;
- Mashima, Jun;
- Kosuge, Takehide;
- Fujisawa, Takatomo
Publication type:
Article
Genome sequence and overview of Oligoflexus tunisiensis Shr3<sup>T</sup> in the eighth class Oligoflexia of the phylum Proteobacteria.
Published in:
Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0210-6
By:
- Ryosuke Nakai;
- Takatomo Fujisawa;
- Yasukazu Nakamura;
- Tomoya Baba;
- Miyuki Nishijima;
- Karray, Fatma;
- Sayadi, Sami;
- Hiroko Isoda;
- Takeshi Naganuma;
- Hironori Niki
Publication type:
Article
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
Published in:
Bioinformatics, 2018, v. 34, n. 6, p. 1037, doi. 10.1093/bioinformatics/btx713
By:
- Tanizawa, Yasuhiro;
- Fujisawa, Takatomo;
- Nakamura, Yasukazu
Publication type:
Article
Genome sequencing of the NIES Cyanobacteria collection with a focus on the heterocyst-forming clade.
Published in:
DNA Research, 2021, v. 28, n. 6, p. 1, doi. 10.1093/dnares/dsab024
By:
- Hirose, Yuu;
- Ohtsubo, Yoshiyuki;
- Misawa, Naomi;
- Yonekawa, Chinatsu;
- Nagao, Nobuyoshi;
- Shimura, Yohei;
- Fujisawa, Takatomo;
- Kanesaki, Yu;
- Katoh, Hiroshi;
- Katayama, Mitsunori;
- Yamaguchi, Haruyo;
- Yoshikawa, Hirofumi;
- Ikeuchi, Masahiko;
- Eki, Toshihiko;
- Nakamura, Yasukazu;
- Kawachi, Masanobu
Publication type:
Article
Genomic Structure of an Economically Important Cyanobacterium, Arthrospira (Spirulina) platensis NIES-39.
Published in:
DNA Research, 2010, v. 17, n. 2, p. 85, doi. 10.1093/dnares/dsq004
By:
- Fujisawa, Takatomo;
- Narikawa, Rei;
- Okamoto, Shinobu;
- Ehira, Shigeki;
- Yoshimura, Hidehisa;
- Suzuki, Iwane;
- Masuda, Tatsuru;
- Mochimaru, Mari;
- Takaichi, Shinichi;
- Awai, Koichiro;
- Sekine, Mitsuo;
- Horikawa, Hiroshi;
- Yashiro, Isao;
- Omata, Seiha;
- Takarada, Hiromi;
- Katano, Yoko;
- Kosugi, Hiroki;
- Tanikawa, Satoshi;
- Ohmori, Kazuko;
- Sato, Naoki
Publication type:
Article

Found: 29