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Bioinformatics Analysis of Publicly Available Single-Nuclei Transcriptomics Alzheimer's Disease Datasets Reveals APOE Genotype-Specific Changes Across Cell Types in Two Brain Regions.
Published in:
Frontiers in Aging Neuroscience, 2022, v. 14, p. 1, doi. 10.3389/fnagi.2022.749991
By:
- Belonwu, Stella A.;
- Li, Yaqiao;
- Bunis, Daniel G.;
- Rao, Arjun Arkal;
- Solsberg, Caroline Warly;
- Oskotsky, Tomiko;
- Taubes, Alice L.;
- Grone, Brian;
- Zalocusky, Kelly A.;
- Fragiadakis, Gabriela K.;
- Huang, Yadong;
- Sirota, Marina
Publication type:
Article
Single-cell transcriptome analysis defines heterogeneity of the murine pancreatic ductal tree.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.67776
By:
- Hendley, Audrey M.;
- Rao, Arjun A.;
- Leonhardt, Laura;
- Ashe, Sudipta;
- Smith, Jennifer A.;
- Giacometti, Simone;
- Peng, Xianlu L.;
- Honglin Jiang;
- Berrios, David I.;
- Pawlak, Mathias;
- Li, Lucia Y.;
- Lee, Jonghyun;
- Collisson, Eric A.;
- Anderson, Mark S.;
- Fragiadakis, Gabriela K.;
- Jen Jen Yeh;
- Chun Jimmie Ye;
- Kim, Grace E.;
- Weaver, Valerie M.;
- Hebrok, Matthias
Publication type:
Article
Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types.
Published in:
Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.867016
By:
- Fragiadakis, Gabriela K.;
- Bjornson-Hooper, Zachary B.;
- Madhireddy, Deepthi;
- Sachs, Karen;
- Chen, Han;
- McIlwain, David R.;
- Spitzer, Matthew H.;
- Bendall, Sean C.;
- Nolan, Garry P.
Publication type:
Article
A Comprehensive Atlas of Immunological Differences Between Humans, Mice, and Non-Human Primates.
Published in:
Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.867015
By:
- Bjornson-Hooper, Zachary B.;
- Fragiadakis, Gabriela K.;
- Spitzer, Matthew H.;
- Chen, Han;
- Madhireddy, Deepthi;
- Hu, Kevin;
- Lundsten, Kelly;
- McIlwain, David R.;
- Nolan, Garry P.
Publication type:
Article
Gut microbiome transition across a lifestyle gradient in Himalaya.
Published in:
PLoS Biology, 2018, v. 16, n. 11, p. 1, doi. 10.1371/journal.pbio.2005396
By:
- Jha, Aashish R.;
- Davenport, Emily R.;
- Gautam, Yoshina;
- Bhandari, Dinesh;
- Tandukar, Sarmila;
- Ng, Katharine M.;
- Fragiadakis, Gabriela K.;
- Holmes, Susan;
- Gautam, Guru Prasad;
- Leach, Jeff;
- Sherchand, Jeevan Bahadur;
- Bustamante, Carlos D.;
- Sonnenburg, Justin L.
Publication type:
Article
Implementing Mass Cytometry at the Bedside to Study the Immunological Basis of Human Diseases: Distinctive Immune Features in Patients with a History of Term or Preterm Birth.
Published in:
Cytometry. Part A, 2015, v. 87, n. 9, p. 817, doi. 10.1002/cyto.a.22720
By:
- Gaudillière, Brice;
- Ganio, Edward A.;
- Tingle, Martha;
- Lancero, Hope L.;
- Fragiadakis, Gabriela K.;
- Baca, Quentin J.;
- Aghaeepour, Nima;
- Wong, Ronald J.;
- Quaintance, Cele;
- El‐Sayed, Yasser Y.;
- Shaw, Gary M.;
- Lewis, David B.;
- Stevenson, David K.;
- Nolan, Garry P.;
- Angst, Martin S.
Publication type:
Article
Transient partial permeabilization with saponin enables cellular barcoding prior to surface marker staining.
Published in:
Cytometry. Part A, 2014, v. 85, n. 12, p. 1011, doi. 10.1002/cyto.a.22573
By:
- Behbehani, Gregory K.;
- Thom, Colin;
- Zunder, Eli R.;
- Finck, Rachel;
- Gaudilliere, Brice;
- Fragiadakis, Gabriela K.;
- Fantl, Wendy J.;
- Nolan, Garry P.
Publication type:
Article
Landscape of coordinated immune responses to H1N1 challenge in humans.
Published in:
2020
By:
- Rahil, Zainab;
- Leylek, Rebecca;
- Schürch, Christian M.;
- Han Chen;
- Bjornson-Hooper, Zach;
- Christensen, Shannon R.;
- Gherardini, Pier Federico;
- Bhate, Salil S.;
- Spitzer, Matthew H.;
- Fragiadakis, Gabriela K.;
- Mukherjee, Nilanjan;
- Kim, Nelson;
- Sizun Jiang;
- Yo, Jennifer;
- Gaudilliere, Brice;
- Affrime, Melton;
- Bock, Bonnie;
- Hensley, Scott E.;
- Idoyaga, Juliana;
- Aghaeepour, Nima
Publication type:
journal article
Clinical recovery from surgery correlates with single-cell immune signatures.
Published in:
Science Translational Medicine, 2014, v. 6, n. 255, p. 1, doi. 10.1126/scitranslmed.3009701
By:
- Gaudillière, Brice;
- Fragiadakis, Gabriela K.;
- Bruggner, Robert V.;
- Nicolau, Monica;
- Finck, Rachel;
- Tingle, Martha;
- Silva, Julian;
- Ganio, Edward A.;
- Yeh, Christine G.;
- Maloney, William J.;
- Huddleston, James I.;
- Goodman, Stuart B.;
- Davis, Mark M.;
- Bendall, Sean C.;
- Fantl, Wendy J.;
- Angst, Martin S.;
- Nolan, Garry P.
Publication type:
Article
FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets.
Published in:
Nature Protocols, 2020, v. 15, n. 2, p. 398, doi. 10.1038/s41596-019-0246-3
By:
- Ko, Melissa E.;
- Williams, Corey M.;
- Fread, Kristen I.;
- Goggin, Sarah M.;
- Rustagi, Rohit S.;
- Fragiadakis, Gabriela K.;
- Nolan, Garry P.;
- Zunder, Eli R.
Publication type:
Article
Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer's Disease Across Two Brain Regions.
Published in:
Molecular Neurobiology, 2022, v. 59, n. 1, p. 276, doi. 10.1007/s12035-021-02591-8
By:
- Belonwu, Stella A.;
- Li, Yaqiao;
- Bunis, Daniel;
- Rao, Arjun Arkal;
- Solsberg, Caroline Warly;
- Tang, Alice;
- Fragiadakis, Gabriela K.;
- Dubal, Dena B.;
- Oskotsky, Tomiko;
- Sirota, Marina
Publication type:
Article
dittoSeq: universal user-friendly single-cell and bulk RNA sequencing visualization toolkit.
Published in:
Bioinformatics, 2020, v. 36, n. 22/23, p. 5535, doi. 10.1093/bioinformatics/btaa1011
By:
- Bunis, Daniel G;
- Andrews, Jared;
- Fragiadakis, Gabriela K;
- Burt, Trevor D;
- Sirota, Marina
Publication type:
Article
GateFinder: projection-based gating strategy optimization for flow and mass cytometry.
Published in:
Bioinformatics, 2018, v. 34, n. 23, p. 4131, doi. 10.1093/bioinformatics/bty430
By:
- Aghaeepour, Nima;
- Simonds, Erin F;
- Knapp, David J H F;
- Bruggner, Robert V;
- Sachs, Karen;
- Culos, Anthony;
- Gherardini, Pier Federico;
- Samusik, Nikolay;
- Fragiadakis, Gabriela K;
- Bendall, Sean C
Publication type:
Article

Found: 13