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Microbial community drivers of PK/NRP gene diversity in selected global soils.
- Published in:
- Microbiome, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40168-019-0692-8
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- Publication type:
- Article
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011422
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- Publication type:
- Article
A Vaccinology Approach to the Identification and Characterization of Dermanyssus gallinae Candidate Protective Antigens for the Control of Poultry Red Mite Infestations.
- Published in:
- Vaccines, 2019, v. 7, n. 4, p. 190, doi. 10.3390/vaccines7040190
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- Publication type:
- Article
SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. D1, p. D777, doi. 10.1093/nar/gkad943
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- Publication type:
- Article
Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02155-4
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- Publication type:
- Article
Erratum to: Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.
- Published in:
- Genome Biology & Evolution, 2021, v. 13, n. 6, p. 1, doi. 10.1093/gbe/evab129
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- Publication type:
- Article
Predicted Input of Uncultured Fungal Symbionts to a Lichen Symbiosis from Metagenome-Assembled Genomes.
- Published in:
- Genome Biology & Evolution, 2021, v. 13, n. 4, p. 1, doi. 10.1093/gbe/evab047
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- Publication type:
- Article
Should the poultry red mite Dermanyssus gallinae be of wider concern for veterinary and medical science?
- Published in:
- Parasites & Vectors, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13071-015-0768-7
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- Publication type:
- Article
Present and future potential of plant-derived products to control arthropods of veterinary and medical significance.
- Published in:
- Parasites & Vectors, 2014, v. 7, n. 1, p. 1, doi. 10.1186/1756-3305-7-28
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- Publication type:
- Article
Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-75
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- Publication type:
- Article
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2105-15-7
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- Publication type:
- Article
Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-265
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- Publication type:
- Article
Diversity and specificity of molecular functions in cyanobacterial symbionts.
- Published in:
- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-69215-8
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- Publication type:
- Article
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw027
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- Publication type:
- Article
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat.
- Published in:
- 2015
- By:
- Publication type:
- Proceeding
The challenge of increasing Pfam coverage of the human proteome.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat023
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- Publication type:
- Article
The challenge of increasing Pfam coverage of the human proteome.
- Published in:
- 2013
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- Publication type:
- Correction Notice
The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu.
- Published in:
- Protein Science: A Publication of the Protein Society, 2010, v. 19, n. 11, p. 2131, doi. 10.1002/pro.497
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- Publication type:
- Article
Modifier Effects between Regulatory and Protein-Coding Variation.
- Published in:
- PLoS Genetics, 2008, v. 4, n. 10, p. 1, doi. 10.1371/journal.pgen.1000244
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- Publication type:
- Article
Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004862
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- Publication type:
- Article
Screening of global microbiomes implies ecological boundaries impacting the distribution and dissemination of clinically relevant antimicrobial resistance genes.
- Published in:
- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-04187-x
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- Publication type:
- Article
COVID-19 pandemic reveals the peril of ignoring metadata standards.
- Published in:
- Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0524-5
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- Publication type:
- Article
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
- Published in:
- Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 642, doi. 10.1093/bib/bbaa232
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- Publication type:
- Article
The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.
- Published in:
- Briefings in Bioinformatics, 2015, v. 16, n. 5, p. 865, doi. 10.1093/bib/bbu053
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- Publication type:
- Article
Experience using web services for biological sequence analysis.
- Published in:
- Briefings in Bioinformatics, 2008, v. 9, n. 6, p. 493, doi. 10.1093/bib/bbn029
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- Publication type:
- Article
Pfam 10 years on: 10000 families and still growing.
- Published in:
- Briefings in Bioinformatics, 2008, v. 9, n. 3, p. 210, doi. 10.1093/bib/bbn010
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- Publication type:
- Article
Microbial abundance, activity and population genomic profiling with mOTUs2.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08844-4
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- Publication type:
- Article
Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data.
- Published in:
- Nature Protocols, 2021, v. 16, n. 5, p. 2520, doi. 10.1038/s41596-021-00508-2
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- Publication type:
- Article
Phylogenomics of expanding uncultured environmental Tenericutes provides insights into their pathogenicity and evolutionary relationship with Bacilli.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-06807-4
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- Publication type:
- Article
Integrating biological data -- the Distributed Annotation System.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S8-S3
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- Publication type:
- Article
Integrating sequence and structural biology with DAS.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 333, doi. 10.1186/1471-2105-8-333
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- Publication type:
- Article
TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations.
- Published in:
- Bioinformatics, 2019, v. 35, n. 3, p. 518, doi. 10.1093/bioinformatics/bty625
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- Publication type:
- Article
3DPatch: fast 3D structure visualization with residue conservation.
- Published in:
- Bioinformatics, 2019, v. 35, n. 2, p. 332, doi. 10.1093/bioinformatics/bty464
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- Publication type:
- Article
Going Molecular: Sequence-based spatiotemporal biodiversity evidence in GBIF.
- Published in:
- 2019
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- Publication type:
- Abstract
R2DT is a framework for predicting and visualising RNA secondary structure using templates.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23555-5
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- Publication type:
- Article
Clustered Coding Variants in the Glutamate Receptor Complexes of Individuals with Schizophrenia and Bipolar Disorder.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0019011
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- Publication type:
- Article
Representative Proteomes: A Stable, Scalable and Unbiased Proteome Set for Sequence Analysis and Functional Annotation.
- Published in:
- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018910
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- Publication type:
- Article
Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies.
- Published in:
- PeerJ, 2019, p. 1, doi. 10.7717/peerj.6160
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- Publication type:
- Article
Key challenges for the creation and maintenance of specialist protein resources.
- Published in:
- 2015
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- Publication type:
- Editorial
Escherichia coli RNA polymerase core and holoenzyme structures.
- Published in:
- EMBO Journal, 2000, v. 19, n. 24, p. 6833, doi. 10.1093/emboj/19.24.6833
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- Publication type:
- Article
An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-89881-2
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- Publication type:
- Article
metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data.
- Published in:
- GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad078
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- Publication type:
- Article
A machine learning framework for discovery and enrichment of metagenomics metadata from open access publications.
- Published in:
- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac077
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- Publication type:
- Article
Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments.
- Published in:
- GigaScience, 2018, v. 7, n. 5, p. N.PAG, doi. 10.1093/gigascience/giy054
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- Publication type:
- Article
The metagenomic data life-cycle: standards and best practices.
- Published in:
- GigaScience, 2017, v. 6, n. 8, p. 1, doi. 10.1093/gigascience/gix047
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- Publication type:
- Article
Pfam: The protein families database in 2021.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D412, doi. 10.1093/nar/gkaa913
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- Publication type:
- Article
Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. D1, p. D192, doi. 10.1093/nar/gkaa1047
- By:
- Publication type:
- Article
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D314, doi. 10.1093/nar/gkz967
- By:
- Publication type:
- Article
MGnify: the microbiome analysis resource in 2020.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. D1, p. D570, doi. 10.1093/nar/gkz1035
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- Publication type:
- Article
EMBL-EBI search and sequence analysis tools APIs in 2019.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. W1, p. W636, doi. 10.1093/nar/gkz268
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- Publication type:
- Article