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Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W256, doi. 10.1093/nar/gkw304
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- Article
Protein frustratometer: a tool to localize energetic frustration in protein molecules.
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- Nucleic Acids Research, 2012, v. 40, p. W348, doi. 10.1093/nar/gks447
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- Article
FrustratometeR: an R-package to compute local frustration in protein structures, point mutants and MD simulations.
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- Bioinformatics, 2021, v. 37, n. 18, p. 3038, doi. 10.1093/bioinformatics/btab176
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- Article
Protein Repeats from First Principles.
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- Scientific Reports, 2016, p. 23959, doi. 10.1038/srep23959
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- Article
Local energetic frustration conservation in protein families and superfamilies.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43801-2
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- Article
Protein Stability and Dynamics Modulation: The Case of Human Frataxin.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045743
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- Article
Capturing coevolutionary signals in repeat proteins.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0648-3
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- Article
Capturing coevolutionary signals in repeat proteins
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0648-3
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- Article
Amino Acid Metabolism Conflicts with Protein Diversity.
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- Molecular Biology & Evolution, 2014, v. 31, n. 11, p. 2905, doi. 10.1093/molbev/msu228
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- Article
Large Ankyrin repeat proteins are formed with similar and energetically favorable units.
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- PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0233865
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- Article
Structural and Energetic Characterization of the Ankyrin Repeat Protein Family.
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- PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004659
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- Article
The Energy Landscapes of Repeat-Containing Proteins: Topology, Cooperativity, and the Folding Funnels of One-Dimensional Architectures.
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- PLoS Computational Biology, 2008, v. 4, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000070
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- Article
Repeat proteins challenge the concept of structural domains.
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- Biochemical Society Transactions, 2015, v. 43, n. 5, p. 844, doi. 10.1042/BST20150083
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- Article
Frustration in biomolecules.
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- Quarterly Reviews of Biophysics, 2014, v. 47, n. 4, p. 285, doi. 10.1017/S0033583514000092
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- Article
Inferring repeat-protein energetics from evolutionary information.
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- PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005584
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- Article
A strained DNA binding helix is conserved for site recognition, folding nucleation, and conformational modulation.
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- Biopolymers, 2009, v. 91, n. 6, p. 432, doi. 10.1002/bip.21146
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- Article
Frustraevo: a web server to localize and quantify the conservation of local energetic frustration in protein families.
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- Nucleic Acids Research, 2024, v. 52, n. W1, p. W233, doi. 10.1093/nar/gkae244
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- Article
Resolving the fine structure in the energy landscapes of repeat proteins.
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- QRB Discovery, 2022, v. 3, p. 1, doi. 10.1017/qrd.2022.4
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- Article
Size and structure of the sequence space of repeat proteins.
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- PLoS Computational Biology, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pcbi.1007282
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- Article
Surveying biomolecular frustration at atomic resolution.
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- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19560-9
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- Article
Mutational analysis of kinetic partitioning in protein folding and protein–DNA binding.
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- PEDS: Protein Engineering, Design & Selection, 2011, v. 24, n. 1/2, p. 179
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- Article
Coevolution‐derived native and non‐native contacts determine the emergence of a novel fold in a universally conserved family of transcription factors.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 6, p. 1, doi. 10.1002/pro.4337
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- Article