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Differential gene expression in bacterial symbionts from loliginid squids demonstrates variation between mutualistic and environmental niches.
Published in:
Environmental Microbiology Reports, 2010, v. 2, n. 4, p. 514, doi. 10.1111/j.1758-2229.2009.00077.x
By:
- Guerrero-Ferreira, Ricardo C.;
- Nishiguchi, Michele K.
Publication type:
Article
The plasma biomarker soluble SIGLEC-1 is associated with the type I interferon transcriptional signature, ethnic background and renal disease in systemic lupus erythematosus.
Published in:
Arthritis Research & Therapy, 2018, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13075-018-1649-1
By:
- Oliveira, João J.;
- Karrar, Sarah;
- Rainbow, Daniel B.;
- Pinder, Christopher L.;
- Clarke, Pamela;
- Rubio García, Arcadio;
- Al-Assar, Osama;
- Burling, Keith;
- Morris, Sian;
- Stratton, Richard;
- Vyse, Tim J.;
- Wicker, Linda S.;
- Todd, John A.;
- Ferreira, Ricardo C.
Publication type:
Article
Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.
Published in:
Microscopy & Microanalysis, 2018, v. 24, n. 4, p. 406, doi. 10.1017/S1431927618012382
By:
- Dillard, Rebecca S.;
- Hampton, Cheri M.;
- Strauss, Joshua D.;
- Ke, Zunlong;
- Altomara, Deanna;
- Guerrero-Ferreira, Ricardo C.;
- Kiss, Gabriella;
- Wright, Elizabeth R.
Publication type:
Article
Capturing Enveloped Viruses on Affinity Grids for Downstream Cryo-Electron Microscopy Applications.
Published in:
Microscopy & Microanalysis, 2014, v. 20, n. 1, p. 164, doi. 10.1017/S1431927613013937
By:
- Kiss, Gabriella;
- Chen, Xuemin;
- Brindley, Melinda A.;
- Campbell, Patricia;
- Afonso, Claudio L.;
- Ke, Zunlong;
- Holl, Jens M.;
- Guerrero-Ferreira, Ricardo C.;
- Byrd-Leotis, Lauren A.;
- Steel, John;
- Steinhauer, David A.;
- Plemper, Richard K.;
- Kelly, Deborah F.;
- Spearman, Paul W.;
- Wright, Elizabeth R.
Publication type:
Article
Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.
Published in:
Nature Genetics, 2010, v. 42, n. 9, p. 777, doi. 10.1038/ng.644
By:
- Ferreira, Ricardo C.;
- Qiang Pan-Hammarström;
- Graham, Robert R.;
- Gateva, Vesela;
- Fontán, Gumersindo;
- Lee, Annette T.;
- Ortmann, Ward;
- Urcelay, Elena;
- Fernández-Arquero, Miguel;
- Núñez, Concepción;
- Jorgensen, Gudmundur;
- Ludviksson, Björn R.;
- Koskinen, Sinikka;
- Haimila, Katri;
- Clark, Hilary F.;
- Klareskog, Lars;
- Gregersen, Peter K.;
- Behrens, Timothy W.;
- Hammarström, Lennart
Publication type:
Article
A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.
Published in:
Nature Genetics, 2009, v. 41, n. 11, p. 1228, doi. 10.1038/ng.468
By:
- Gateva, Vesela;
- Sandling, Johanna K.;
- Hom, Geoff;
- Taylor, Kimberly E.;
- Chung, Sharon A.;
- Xin Sun;
- Ortmann, Ward;
- Kosoy, Roman;
- Ferreira, Ricardo C.;
- Nordmark, Gunnel;
- Gunnarsson, Iva;
- Svenungsson, Elisabet;
- Padyukov, Leonid;
- Sturfelt, Gunnar;
- Jönsen, Andreas;
- Bengtsson, Anders A.;
- Rantapää-Dahlqvist, Solbritt;
- Baechler, Emily C.;
- Brown, Elizabeth E.;
- Alarcón, Graciela S.
Publication type:
Article
Multiple polymorphisms in the TNFAIP3 region are independently associated with systemic lupus erythematosus.
Published in:
Nature Genetics, 2008, v. 40, n. 9, p. 1062, doi. 10.1038/ng.202
By:
- Musone, Stacy L.;
- Taylor, Kimberly E.;
- Lu, Timothy T.;
- Nititham, Joanne;
- Ferreira, Ricardo C.;
- Ortmann, Ward;
- Shifrin, Nataliya;
- Petri, Michelle A.;
- Kamboh, M. Ilyas;
- Manzi, Susan;
- Sedin, Michael F.;
- Gregersen, Peter K.;
- Behrens, Timothy W.;
- Ma, Averil;
- Pui-Yan Kwok;
- Criswell, Lindsey A.
Publication type:
Article
Low frequency of CD4+ CD25+ Treg in SLE patients: a heritable trait associated with CTLA4 and TGF gene variants.
Published in:
BMC Immunology, 2009, v. 10, p. 1, doi. 10.1186/1471-2172-10-5
By:
- Barreto, Marta;
- Ferreira, Ricardo C.;
- Lourenço, Lara;
- Moraes-Fontes, Maria F.;
- Santos, Eugénia;
- Alves, Miguel;
- Carvalho, Cláudia;
- Martins, Berta;
- Andreia, Rita;
- Viana, João F.;
- Vasconcelos, Carlos;
- Mota-Vieira, Luísa;
- Ferreira, Carlos;
- Demengeot, Jocelyne;
- Vicente, Astrid M.
Publication type:
Article
SARS-CoV-2 infection induces a long-lived pro-inflammatory transcriptional profile.
Published in:
Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01227-x
By:
- Zhang, Jia-Yuan;
- Whalley, Justin P.;
- Knight, Julian C.;
- Wicker, Linda S.;
- Todd, John A.;
- Ferreira, Ricardo C.
Publication type:
Article
Compensatory T-Cell Regulation in Unaffected Relatives of SLE Patients, and Opposite IL-2/CD25-Mediated Effects Suggested by Coreferentiality Modeling.
Published in:
PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033992
By:
- Fesel, Constantin;
- Barreto, Marta;
- Ferreira, Ricardo C.;
- Costa, Nuno;
- Venda, Lara L.;
- Pereira, Clara;
- Carvalho, Claudia;
- Morães-Fontes, Maria Francisca;
- Ferreira, Carlos M.;
- Vasconcelos, Carlos;
- Viana, João F.;
- Santos, Eugenia;
- Martins, Berta;
- Demengeot, Jocelyne;
- Vicente, Astrid M.
Publication type:
Article
Chronic Immune Activation in Systemic Lupus Erythematosus and the Autoimmune PTPN22 Trp620 Risk Allele Drive the Expansion of FOXP3+ Regulatory T Cells and PD-1 Expression.
Published in:
Frontiers in Immunology, 2019, v. 10, p. 1, doi. 10.3389/fimmu.2019.02606
By:
- Ferreira, Ricardo C.;
- Castro Dopico, Xaquin;
- Oliveira, João J.;
- Rainbow, Daniel B.;
- Yang, Jennie H.;
- Trzupek, Dominik;
- Todd, Sarah A.;
- McNeill, Mhairi;
- Steri, Maristella;
- Orrù, Valeria;
- Fiorillo, Edoardo;
- Crouch, Daniel J. M.;
- Pekalski, Marcin L.;
- Cucca, Francesco;
- Tree, Tim I.;
- Vyse, Tim J.;
- Wicker, Linda S.;
- Todd, John A.
Publication type:
Article
Iberian major Regions Interregional Trade across the Border.
Published in:
Journal of Economics & Business Research, 2016, v. 22, n. 2, p. 19
By:
- Ferreira, Ricardo C. B.
Publication type:
Article
Structure and transformation of bacteriophage A511 baseplate and tail upon infection of Listeria cells.
Published in:
EMBO Journal, 2019, v. 38, n. 3, p. 1, doi. 10.15252/embj.201899455
By:
- Guerrero‐Ferreira, Ricardo C;
- Hupfeld, Mario;
- Nazarov, Sergey;
- Taylor, Nicholas MI;
- Shneider, Mikhail M;
- Obbineni, Jagan M;
- Loessner, Martin J;
- Ishikawa, Takashi;
- Klumpp, Jochen;
- Leiman, Petr G
Publication type:
Article
CD70 expression determines the therapeutic efficacy of expanded human regulatory T cells.
Published in:
Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-1097-8
By:
- Arroyo Hornero, Rebeca;
- Georgiadis, Christos;
- Hua, Peng;
- Trzupek, Dominik;
- He, Li-Zhen;
- Qasim, Waseem;
- Todd, John A.;
- Ferreira, Ricardo C.;
- Wood, Kathryn J.;
- Issa, Fadi;
- Hester, Joanna
Publication type:
Article
Widespread seasonal gene expression reveals annual differences in human immunity and physiology.
Published in:
Nature Communications, 2015, v. 6, n. 5, p. 7000, doi. 10.1038/ncomms8000
By:
- Dopico, Xaquin Castro;
- Evangelou, Marina;
- Ferreira, Ricardo C.;
- Guo, Hui;
- Pekalski, Marcin L.;
- Smyth, Deborah J.;
- Cooper, Nicholas;
- Burren, Oliver S.;
- Fulford, Anthony J.;
- Hennig, Branwen J.;
- Prentice, Andrew M.;
- Ziegler, Anette-G.;
- Bonifacio, Ezio;
- Wallace, Chris;
- Todd, John A.
Publication type:
Article
Branched Lateral Tail Fiber Organization in T5-Like Bacteriophages DT57C and DT571/2 is Revealed by Genetic and Functional Analysis.
Published in:
Viruses (1999-4915), 2016, v. 8, n. 4, p. 26, doi. 10.3390/v8010026
By:
- Golomidova, Alla K.;
- Kulikov, Eugene E.;
- Prokhorov, Nikolai S.;
- Guerrero-Ferreira, Ricardo C.;
- Knirel, Yuriy A.;
- Kostryukova, Elena S.;
- Tarasyan, Karina K.;
- Letarov, Andrey V.
Publication type:
Article
Branched Lateral Tail Fiber Organization in T5-Like Bacteriophages DT57C and DT571/2 is Revealed by Genetic and Functional Analysis.
Published in:
Viruses (1999-4915), 2016, v. 8, n. 1, p. 26, doi. 10.3390/v8010026
By:
- Golomidova, Alla K.;
- Kulikov, Eugene E.;
- Prokhorov, Nikolai S.;
- Guerrero-Ferreira, Ricardo C.;
- Knirel, Yuriy A.;
- Kostryukova, Elena S.;
- Tarasyan, Karina K.;
- Letarov, Andrey V.
Publication type:
Article
Neutrophil-mediated IL-6 receptor trans-signaling and the risk of chronic obstructive pulmonary disease and asthma.
Published in:
Human Molecular Genetics, 2017, v. 26, n. 8, p. 1584, doi. 10.1093/hmg/ddx053
By:
- Farahi, Neda;
- Paige, Ellie;
- Balla, Jozef;
- Prudence, Emily;
- Ferreira, Ricardo C.;
- Southwood, Mark;
- Appleby, Sarah L.;
- Bakke, Per;
- Gulsvik, Amund;
- Litonjua, Augusto A.;
- Sparrow, David;
- Silverman, Edwin K.;
- Cho, Michael H.;
- Danesh, John;
- Paul, Dirk S.;
- Freitag, Daniel F.;
- Chilvers, Edwin R.
Publication type:
Article
Chromosome contacts in activated T cells identify autoimmune disease candidate genes.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1285-0
By:
- Burren, Oliver S.;
- García, Arcadio Rubio;
- Javierre, Biola-Maria;
- Rainbow, Daniel B.;
- Cairns, Jonathan;
- Cooper, Nicholas J.;
- Lambourne, John J.;
- Schofield, Ellen;
- Xaquin Castro Dopico;
- Ferreira, Ricardo C.;
- Coulson, Richard;
- Burden, Frances;
- Rowlston, Sophia P.;
- Downes, Kate;
- Wingett, Steven W.;
- Frontini, Mattia;
- Ouwehand, Willem H.;
- Fraser, Peter;
- Spivakov, Mikhail;
- Todd, John A.
Publication type:
Article
Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping.
Published in:
PLoS Genetics, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.pgen.1005272
By:
- Wallace, Chris;
- Cutler, Antony J;
- Pontikos, Nikolas;
- Pekalski, Marcin L;
- Burren, Oliver S;
- Cooper, Jason D;
- García, Arcadio Rubio;
- Ferreira, Ricardo C;
- Guo, Hui;
- Walker, Neil M;
- Smyth, Deborah J;
- Rich, Stephen S;
- Onengut-Gumuscu, Suna;
- Sawcer, Stephen J;
- Ban, Maria;
- Richardson, Sylvia;
- Todd, John A;
- Wicker, Linda S
Publication type:
Article
Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping.
Published in:
PLoS Genetics, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pgen.1005272
By:
- Wallace, Chris;
- Cutler, Antony J;
- Pontikos, Nikolas;
- Pekalski, Marcin L;
- Burren, Oliver S;
- Cooper, Jason D;
- García, Arcadio Rubio;
- Ferreira, Ricardo C;
- Guo, Hui;
- Walker, Neil M;
- Smyth, Deborah J;
- Rich, Stephen S;
- Onengut-Gumuscu, Suna;
- Sawcer, Stephen J;
- Ban, Maria;
- Richardson, Sylvia;
- Todd, John A;
- Wicker, Linda S
Publication type:
Article
Functional IL6R 358Ala Allele Impairs Classical IL-6 Receptor Signaling and Influences Risk of Diverse Inflammatory Diseases.
Published in:
PLoS Genetics, 2013, v. 9, n. 4, p. 1, doi. 10.1371/journal.pgen.1003444
By:
- Ferreira, Ricardo C.;
- Freitag, Daniel F.;
- Cutler, Antony J.;
- Howson, Joanna M. M.;
- Rainbow, Daniel B.;
- Smyth, Deborah J.;
- Kaptoge, Stephen;
- Clarke, Pamela;
- Boreham, Charlotte;
- Coulson, Richard M.;
- Pekalski, Marcin L.;
- Wei-Min Chen;
- Onengut-Gumuscu, Suna;
- Rich, Stephen S.;
- Butterworth, Adam S.;
- Malarstig, Anders;
- Danesh, John;
- Todd, John A.
Publication type:
Article
High-Density SNP Mapping of the HLA Region Identifies Multiple Independent Susceptibility Loci Associated with Selective IgA Deficiency.
Published in:
PLoS Genetics, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pgen.1002476
By:
- Ferreira, Ricardo C.;
- Pan-Hammarström, Qiang;
- Graham, Robert R.;
- Fontán, Gumersindo;
- Lee, Annette T.;
- Ortmann, Ward;
- Wang, Ning;
- Urcelay, Elena;
- Fernández-Arquero, Miguel;
- Núñez, Concepción;
- Jorgensen, Gudmundur;
- Ludviksson, Björn R.;
- Koskinen, Sinikka;
- Haimila, Katri;
- Padyukov, Leonid;
- Gregersen, Peter K.;
- Hammarström, Lennart;
- Behrens, Timothy W.
Publication type:
Article
Regulatory T Cell Responses in Participants with Type 1 Diabetes after a Single Dose of Interleukin-2: A Non-Randomised, Open Label, Adaptive Dose-Finding Trial.
Published in:
2016
By:
- Todd, John A.;
- Evangelou, Marina;
- Cutler, Antony J.;
- Pekalski, Marcin L.;
- Walker, Neil M.;
- Stevens, Helen E.;
- Porter, Linsey;
- Smyth, Deborah J.;
- Rainbow, Daniel B.;
- Ferreira, Ricardo C.;
- Esposito, Laura;
- Hunter, Kara M. D.;
- Loudon, Kevin;
- Irons, Kathryn;
- Yang, Jennie H.;
- Bell, Charles J. M.;
- Schuilenburg, Helen;
- Heywood, James;
- Challis, Ben;
- Neupane, Sankalpa
Publication type:
journal article
Searching peripheral blood mononuclear cells of children with viral respiratory tract infections preceding islet autoimmunity for viruses by high-throughput sequencing.
Published in:
2018
By:
- Hippich, Markus;
- Oleynik, Alexandra;
- Jain, Komal;
- Winkler, Christiane;
- Ferreira, Ricardo C.;
- Bonifacio, Ezio;
- Ziegler, Anette-Gabriele;
- Briese, Thomas
Publication type:
Letter to the Editor
Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis.
Published in:
Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-020-00756-z
By:
- Trzupek, Dominik;
- Dunstan, Melanie;
- Cutler, Antony J.;
- Lee, Mercede;
- Godfrey, Leila;
- Jarvis, Lorna;
- Rainbow, Daniel B.;
- Aschenbrenner, Dominik;
- Jones, Joanne L.;
- Uhlig, Holm H.;
- Wicker, Linda S.;
- Todd, John A.;
- Ferreira, Ricardo C.
Publication type:
Article
Natural Variation in Interleukin-2 Sensitivity Influences Regulatory T-Cell Frequency and Function in Individuals With Long-standing Type 1 Diabetes.
Published in:
2015
By:
- Yang, Jennie H. M.;
- Cutler, Antony J.;
- Ferreira, Ricardo C.;
- Reading, James L.;
- Cooper, Nicholas J.;
- Wallace, Chris;
- Clarke, Pamela;
- Smyth, Deborah J.;
- Boyce, Christopher S.;
- Guo-Jian Gao;
- Todd, John A.;
- Wicker, Linda S.;
- Tree, Timothy I. M.;
- Gao, Guo-Jian
Publication type:
journal article
A Type I Interferon Transcriptional Signature Precedes Autoimmunity in Children Genetically at Risk for Type 1 Diabetes.
Published in:
Diabetes, 2014, v. 63, n. 7, p. 2538, doi. 10.2337/db13-1777
By:
- Ferreira, Ricardo C.;
- Hui Guo;
- Coulson, Richard M. R.;
- Smyth, Deborah J.;
- Pekalski, Marcin L.;
- Burren, Oliver S.;
- Cutler, Antony J.;
- Doecke, James D.;
- Flint, Shaun;
- McKinney, Eoin F.;
- Lyons, Paul A.;
- Smith, Kenneth G. C.;
- Achenbach, Peter;
- Beyerlein, Andreas;
- Dunger, David B.;
- Clayton, David G.;
- Wicker, Linda S.;
- Todd, John A.;
- Bonifacio, Ezio;
- Wallace, Chris
Publication type:
Article

Found: 28

Differential gene expression in bacterial symbionts from loliginid squids demonstrates variation between mutualistic and environmental niches.

The plasma biomarker soluble SIGLEC-1 is associated with the type I interferon transcriptional signature, ethnic background and renal disease in systemic lupus erythematosus.

Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Capturing Enveloped Viruses on Affinity Grids for Downstream Cryo-Electron Microscopy Applications.

Association of IFIH1 and other autoimmunity risk alleles with selective IgA deficiency.

A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus.

Multiple polymorphisms in the TNFAIP3 region are independently associated with systemic lupus erythematosus.

Low frequency of CD4<sup>+</sup> CD25<sup>+</sup> Treg in SLE patients: a heritable trait associated with CTLA4 and TGF gene variants.

SARS-CoV-2 infection induces a long-lived pro-inflammatory transcriptional profile.

Compensatory T-Cell Regulation in Unaffected Relatives of SLE Patients, and Opposite IL-2/CD25-Mediated Effects Suggested by Coreferentiality Modeling.

Chronic Immune Activation in Systemic Lupus Erythematosus and the Autoimmune PTPN22 Trp<sup>620</sup> Risk Allele Drive the Expansion of FOXP3<sup>+</sup> Regulatory T Cells and PD-1 Expression.

Iberian major Regions Interregional Trade across the Border.

Structure and transformation of bacteriophage A511 baseplate and tail upon infection of Listeria cells.

CD70 expression determines the therapeutic efficacy of expanded human regulatory T cells.

Widespread seasonal gene expression reveals annual differences in human immunity and physiology.

Branched Lateral Tail Fiber Organization in T5-Like Bacteriophages DT57C and DT571/2 is Revealed by Genetic and Functional Analysis.

Branched Lateral Tail Fiber Organization in T5-Like Bacteriophages DT57C and DT571/2 is Revealed by Genetic and Functional Analysis.

Neutrophil-mediated IL-6 receptor trans-signaling and the risk of chronic obstructive pulmonary disease and asthma.

Chromosome contacts in activated T cells identify autoimmune disease candidate genes.

Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping.

Dissection of a Complex Disease Susceptibility Region Using a Bayesian Stochastic Search Approach to Fine Mapping.

Functional IL6R 358Ala Allele Impairs Classical IL-6 Receptor Signaling and Influences Risk of Diverse Inflammatory Diseases.

High-Density SNP Mapping of the HLA Region Identifies Multiple Independent Susceptibility Loci Associated with Selective IgA Deficiency.

Regulatory T Cell Responses in Participants with Type 1 Diabetes after a Single Dose of Interleukin-2: A Non-Randomised, Open Label, Adaptive Dose-Finding Trial.

Searching peripheral blood mononuclear cells of children with viral respiratory tract infections preceding islet autoimmunity for viruses by high-throughput sequencing.

Discovery of CD80 and CD86 as recent activation markers on regulatory T cells by protein-RNA single-cell analysis.

Natural Variation in Interleukin-2 Sensitivity Influences Regulatory T-Cell Frequency and Function in Individuals With Long-standing Type 1 Diabetes.

A Type I Interferon Transcriptional Signature Precedes Autoimmunity in Children Genetically at Risk for Type 1 Diabetes.