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Proteogenomics from a bioinformatics angle: A growing field.
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- Mass Spectrometry Reviews, 2017, v. 36, n. 5, p. 584, doi. 10.1002/mas.21483
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- Article
Simultaneous Quantitative SARS-CoV-2 Antigen and Host Antibody Detection and Pre-Screening Strategy at the Point of Care.
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- Bioengineering (Basel), 2023, v. 10, n. 6, p. 670, doi. 10.3390/bioengineering10060670
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- Article
UXT is required for spermatogenesis in mice.
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- PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0195747
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- Article
Predictive Modeling of Morbidity and Mortality in Patients Hospitalized With COVID-19 and its Clinical Implications: Algorithm Development and Interpretation.
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- 2021
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- Publication type:
- journal article
LINE-1 retrotransposon expression in cancerous, epithelial and neuronal cells revealed by 5′ single-cell RNA-Seq.
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- Nucleic Acids Research, 2023, v. 51, n. 5, p. 2033, doi. 10.1093/nar/gkad049
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- Article
Erratum: Nanoscale visualization of functional adhesion/excitability nodes at the intercalated disc.
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- Nature Communications, 2016, v. 7, n. 2, p. 10919, doi. 10.1038/ncomms10919
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- Article
Nanoscale visualization of functional adhesion/excitability nodes at the intercalated disc.
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- Nature Communications, 2016, v. 7, n. 1, p. 10342, doi. 10.1038/ncomms10342
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- Publication type:
- Article
Breast tumors educate the proteome of stromal tissue in an individualized but coordinated manner.
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- Science Signaling, 2017, v. 10, n. 491, p. 1, doi. 10.1126/scisignal.aam8065
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- Publication type:
- Article
Comprehensive Scanning Mutagenesis of Human Retrotransposon LINE-1 Identifies Motifs Essential for Function.
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- Genetics, 2019, v. 213, n. 4, p. 1401, doi. 10.1534/genetics.119.302601
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- Article
Somatic retrotransposition is infrequent in glioblastomas.
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- Mobile DNA, 2016, v. 7, p. 1, doi. 10.1186/s13100-016-0077-5
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- Publication type:
- Article
Dissection of affinity captured LINE-1 macromolecular complexes.
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- eLife, 2018, p. 1, doi. 10.7554/eLife.30094
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- Article
LINE-1 protein localization and functional dynamics during the cell cycle.
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- eLife, 2018, p. 1, doi. 10.7554/eLife.30058
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- Publication type:
- Article
Proteogenomics unveils mechanistic insights to precision oncology.
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- Clinical & Translational Medicine, 2023, v. 13, n. 11, p. 1, doi. 10.1002/ctm2.1477
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- Publication type:
- Article
Improving the success rate of proteome analysis by modeling protein-abundance distributions and experimental designs.
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- Nature Biotechnology, 2007, v. 25, n. 6, p. 651, doi. 10.1038/nbt1315
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- Publication type:
- Article
TranspoScope: interactive visualization of retrotransposon insertions.
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- Bioinformatics, 2020, v. 36, n. 12, p. 3877, doi. 10.1093/bioinformatics/btaa244
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- Publication type:
- Article
L1EM: a tool for accurate locus specific LINE-1 RNA quantification.
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- Bioinformatics, 2020, v. 36, n. 4, p. 1167, doi. 10.1093/bioinformatics/btz724
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- Publication type:
- Article
Intraarticular injection of liposomal adenosine reduces cartilage damage in established murine and rat models of osteoarthritis.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-68302-w
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- Publication type:
- Article
Spatially interacting phosphorylation sites and mutations in cancer.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22481-w
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- Publication type:
- Article
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data.
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- Genome Biology, 2018, v. 19, p. 1, doi. 10.1186/s13059-017-1377-x
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- Publication type:
- Article
Strategy for Identifying Dendritic Cell-Processed CD4<sup>+</sup> T Cell Epitopes from the HIV Gag p24 Protein.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0041897
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- Publication type:
- Article
OpenSlice: Quantitative data sharing from HyperPeaks to global ion chromatograms (GICs).
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- Proteomics, 2016, v. 16, n. 18, p. 2495, doi. 10.1002/pmic.201600096
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- Publication type:
- Article
Front cover: OpenSlice: Quantitative data sharing from HyperPeaks to global ion chromatograms (GICs).
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- Proteomics, 2016, v. 16, n. 18, p. NA, doi. 10.1002/pmic.201670160
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- Publication type:
- Article
Comparative proteomic analysis of the ATP-sensitive K<sup>+</sup> channel complex in different tissue types.
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- Proteomics, 2013, v. 13, n. 2, p. 368, doi. 10.1002/pmic.201200324
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- Publication type:
- Article
The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard.
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- Proteomics, 2010, v. 10, n. 22, p. 4142, doi. 10.1002/pmic.201000126
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- Publication type:
- Article
A model of random mass-matching and its use for automated significance testing in mass spectrometric proteome analysis.
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- Proteomics, 2002, v. 2, n. 3, p. 262, doi. 10.1002/1615-9861(200203)2:3<262::AID-PROT262>3.0.CO;2-W
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- Article
RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimises protein identification, and archives data in a relational database.
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- Proteomics, 2002, v. 2, n. 1, p. 36, doi. 10.1002/1615-9861(200201)2:1<36::AID-PROT36>3.0.CO;2-W
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- Publication type:
- Article
Informatics development: Challenges and solutions for MALDI mass spectrometry.
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- Mass Spectrometry Reviews, 2008, v. 27, n. 1, p. 1, doi. 10.1002/mas.20152
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- Publication type:
- Article
Rapid, optimized interactomic screening.
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- Nature Methods, 2015, v. 12, n. 6, p. 553, doi. 10.1038/nmeth.3395
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- Article
A robust pipeline for rapid production of versatile nanobody repertoires.
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- Nature Methods, 2014, v. 11, n. 12, p. 1253, doi. 10.1038/nmeth.3170
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- Publication type:
- Article
A predictive model for vertebrate bone identification from collagen using proteomic mass spectrometry.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-90231-5
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- Publication type:
- Article
Affinity proteomic dissection of the human nuclear cap-binding complex interactome.
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- Nucleic Acids Research, 2020, v. 48, n. 18, p. 10456, doi. 10.1093/nar/gkaa743
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- Article
Phylogenetic debugging of a complete human biosynthetic pathway transplanted into yeast.
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- Nucleic Acids Research, 2020, v. 48, n. 1, p. 486, doi. 10.1093/nar/gkz1098
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- Publication type:
- Article
Dormant origin firing promotes head-on transcription-replication conflicts at transcription termination sites in response to BRCA2 deficiency.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48286-1
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- Article
Integrative omics analyses broaden treatment targets in human cancer.
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- Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0564-z
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- Article
Protein indentification using mass spectrometric information.
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- Electrophoresis, 1998, v. 19, n. 6, p. 998, doi. 10.1002/elps.1150190615
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- Publication type:
- Article
The GPMDB REST interface.
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- Bioinformatics, 2015, v. 31, n. 12, p. 2056, doi. 10.1093/bioinformatics/btv107
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- Publication type:
- Article
RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs.
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- Mobile DNA, 2021, v. 12, n. 1, p. 1, doi. 10.1186/s13100-021-00233-3
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- Publication type:
- Article
LINE-1 ORF2p expression is nearly imperceptible in human cancers.
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- Mobile DNA, 2019, v. 11, n. 1, p. 1, doi. 10.1186/s13100-019-0191-2
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- Publication type:
- Article
Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome.
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- Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0148-5
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- Publication type:
- Article
Super-resolution imaging reveals that loss of the C-terminus of connexin43 limits microtubule plus-end capture and NaV1.5 localization at the intercalated disc.
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- Cardiovascular Research, 2014, v. 104, n. 2, p. 371, doi. 10.1093/cvr/cvu195
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- Publication type:
- Article
Super-resolution fluorescence microscopy of the cardiac connexome reveals plakophilin-2 inside the connexin43 plaque.
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- Cardiovascular Research, 2013, v. 100, n. 2, p. 231, doi. 10.1093/cvr/cvt191
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- Publication type:
- Article
Reproducibility of LC-MS-based protein identification.
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- Journal of Experimental Botany, 2006, v. 57, n. 7, p. 1509, doi. 10.1093/jxb/erj139
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- Publication type:
- Article
Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening.
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- Nature Biotechnology, 2023, v. 41, n. 8, p. 1140, doi. 10.1038/s41587-022-01612-8
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- Publication type:
- Article
MED19 encodes two unique protein isoforms that confer prostate cancer growth under low androgen through distinct gene expression programs.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-45199-9
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- Publication type:
- Article
Diversity of Functionally Distinct Clonal Sets of Human Conventional Memory B Cells That Bind Staphylococcal Protein A.
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- Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.662782
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- Publication type:
- Article
Detection of artifacts and peptide modifications in liquid chromatography/mass spectrometry data using two-dimensional signal intensity map data visualization.
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- Rapid Communications in Mass Spectrometry: RCM, 2006, v. 20, n. 10, p. 1558, doi. 10.1002/rcm.2476
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- Publication type:
- Article
Classification of breast cancer subtypes: A study based on representative genes.
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- Journal of the Brazilian Computer Society, 2022, v. 28, n. 1, p. 12, doi. 10.5753/jbcs.2022.2209
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- Publication type:
- Article
Few-shot genes selection: subset of PAM50 genes for breast cancer subtypes classification.
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- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05715-8
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- Publication type:
- Article
GINS motion reveals replication fork progression is remarkably uniform throughout the yeast genome.
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- Molecular Systems Biology, 2010, v. 6, n. 1, p. 353, doi. 10.1038/msb.2010.8
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- Article