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LB14. Cerebrospinal Fluid Profiling of the Human Host Response Reveals Species-Specific Enterovirus Biosignatures in Acute Flaccid Myelitis Cases.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, p. S998, doi. 10.1093/ofid/ofz415.2497
By:
- Briggs, Benjamin J;
- Santos, Yale;
- Ramesh, Akshaya;
- Grabherr, Manfred;
- Achari, Asmeeta;
- Yu, Guixia;
- Miller, Steve;
- Federman, Scot;
- Arevalo, Shaun;
- Sample, Hannah;
- Zorn, Kelsey;
- Harriman, Kathleen;
- Messenger, Sharon;
- Domingue, Samuel;
- Dominguez, Samuel;
- Glaser, Carol;
- Wadford, Debra;
- Messacar, Kevin;
- Wilson, Michael;
- Chiu, Charles
Publication type:
Article
A Child With Intermittent Headaches and Eosinophilic Meningitis.
Published in:
Journal of the Pediatric Infectious Diseases Society, 2018, v. 7, n. 4, p. 355, doi. 10.1093/jpids/piy005
By:
- Saporta-Keating, Sara R;
- Simões, Eric A F;
- Yu, Guixia;
- Federman, Scot;
- Mirsky, David;
- Dominguez, Samuel R;
- Chiu, Charles Y;
- Messacar, Kevin
Publication type:
Article
Diagnosis of Fatal Human Case of St. Louis Encephalitis Virus Infection by Metagenomic Sequencing, California, 2016.
Published in:
2017
By:
- Chiu, Charles Y.;
- Coffey, Lark L.;
- Murkey, Jamie;
- Symmes, Kelly;
- Sample, Hannah A.;
- Wilson, Michael R.;
- Naccache, Samia N.;
- Arevalo, Shaun;
- Somasekar, Sneha;
- Federman, Scot;
- Stryke, Doug;
- Vespa, Paul;
- Schiller, Gary;
- Messenger, Sharon;
- Humphries, Romney;
- Miller, Steve;
- Klausner, Jeffrey D.
Publication type:
journal article
Purifying selection decreases the potential for Bangui orthobunyavirus outbreaks in humans.
Published in:
Virus Evolution, 2023, v. 9, n. 1, p. 1, doi. 10.1093/ve/vead018
By:
- Orf, Gregory S;
- Perez, Lester J;
- Meyer, Todd V;
- Luk, Ka-Cheung;
- Forberg, Kenn;
- Rodgers, Mary A;
- Hadji, Abbas;
- James, Linda;
- Mampunza, Samuel;
- Achari, Asmeeta;
- Yu, Guixia;
- Federman, Scot;
- Chiu, Charles Y;
- McArthur, Carole A;
- Cloherty, Gavin A;
- Berg, Michael G
Publication type:
Article
An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data.
Published in:
Nucleic Acids Research, 2015, v. 43, n. 7, p. e46, doi. 10.1093/nar/gkv002
By:
- Xutao Deng;
- Naccache, Samia N.;
- Ng, Terry;
- Federman, Scot;
- Linlin Li;
- Chiu, Charles Y.;
- Delwart, Eric L.
Publication type:
Article
Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00912-z
By:
- Gu, Wei;
- Talevich, Eric;
- Hsu, Elaine;
- Qi, Zhongxia;
- Urisman, Anatoly;
- Federman, Scot;
- Gopez, Allan;
- Arevalo, Shaun;
- Gottschall, Marc;
- Liao, Linda;
- Tung, Jack;
- Chen, Lei;
- Lim, Harumi;
- Ho, Chandler;
- Kasowski, Maya;
- Oak, Jean;
- Holmes, Brittany J.;
- Yeh, Iwei;
- Yu, Jingwei;
- Wang, Linlin
Publication type:
Article
Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity.
Published in:
PLoS ONE, 2015, v. 10, n. 11, p. 1, doi. 10.1371/journal.pone.0141723
By:
- Luk, Ka-Cheung;
- Berg, Michael G.;
- Naccache, Samia N.;
- Kabre, Beniwende;
- Federman, Scot;
- Mbanya, Dora;
- Kaptué, Lazare;
- Chiu, Charles Y.;
- Brennan, Catherine A.;
- JrHackett, John
Publication type:
Article
Nutritional supplements, COX-2 and IGF-1 expression in men on active surveillance for prostate cancer.
Published in:
2011
By:
- Chan, June;
- Weinberg, Vivian;
- Magbanua, Mark;
- Sosa, Eduardo;
- Simko, Jeffry;
- Shinohara, Katsuto;
- Federman, Scot;
- Mattie, Mike;
- Hughes-Fulford, Millie;
- Haqq, Christopher;
- Carroll, Peter;
- Chan, June M;
- Magbanua, Mark J;
- Carroll, Peter R
Publication type:
journal article
Metabolic, pathologic, and genetic analysis of prostate tissues: quantitative evaluation of histopathologic and mRNA integrity after HR-MAS spectroscopy.
Published in:
NMR in Biomedicine, 2010, v. 23, n. 4, p. 391, doi. 10.1002/nbm.1474
By:
- Santos, Carissa F.;
- Kurhanewicz, John;
- Tabatabai, Z. Laura;
- Simko, Jeffry P.;
- Keshari, Kayvan R.;
- Gbegnon, Akpene;
- Santos, Romelyn DeLos;
- Federman, Scot;
- Shinohara, Katsuto;
- Carroll, Peter R.;
- Haqq, Christopher M.;
- Swanson, Mark G.
Publication type:
Article
A comparison of RNA amplification techniques at sub-nanogram input concentration.
Published in:
BMC Genomics, 2009, v. 10, p. 326, doi. 10.1186/1471-2164-10-326
By:
- Lang, Julie E.;
- Magbanua, Mark Jesus M.;
- Scott, Janet H.;
- Makrigiorgos, G. Mike;
- Gang Wang;
- Federman, Scot;
- Esserman, Laura J.;
- Park, John W.;
- Haqq, Christopher M.
Publication type:
Article
Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid.
Published in:
JAMA Neurology, 2021, v. 78, n. 11, p. 1355, doi. 10.1001/jamaneurol.2021.3088
By:
- Gu, Wei;
- Rauschecker, Andreas M.;
- Hsu, Elaine;
- Zorn, Kelsey C.;
- Sucu, Yasemin;
- Federman, Scot;
- Gopez, Allan;
- Arevalo, Shaun;
- Sample, Hannah A.;
- Talevich, Eric;
- Nguyen, Eric D.;
- Gottschall, Marc;
- Nourbakhsh, Bardia;
- Gold, Carl A.;
- Cree, Bruce A. C.;
- Douglas, Vanja C.;
- Richie, Megan B.;
- Shah, Maulik P.;
- Josephson, S. Andrew;
- Gelfand, Jeffrey M.
Publication type:
Article
Metagenomic Detection of Divergent Insect- and Bat-Associated Viruses in Plasma from Two African Individuals Enrolled in Blood-Borne Surveillance.
Published in:
Viruses (1999-4915), 2023, v. 15, n. 4, p. 1022, doi. 10.3390/v15041022
By:
- Orf, Gregory S.;
- Olivo, Ana;
- Harris, Barbara;
- Weiss, Sonja L.;
- Achari, Asmeeta;
- Yu, Guixia;
- Federman, Scot;
- Mbanya, Dora;
- James, Linda;
- Mampunza, Samuel;
- Chiu, Charles Y.;
- Rodgers, Mary A.;
- Cloherty, Gavin A.;
- Berg, Michael G.
Publication type:
Article
Compact CRISPR genetic screens enabled by improved guide RNA library cloning.
Published in:
Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-023-03132-3
By:
- Heo, Seok-Jin;
- Enriquez, Lauren D.;
- Federman, Scot;
- Chang, Amy Y.;
- Mace, Rachel;
- Shevade, Kaivalya;
- Nguyen, Phuong;
- Litterman, Adam J.;
- Shafer, Shawn;
- Przybyla, Laralynne;
- Chow, Eric D.
Publication type:
Article
Associations of Early COVID-19 Cases in San Francisco With Domestic and International Travel.
Published in:
Clinical Infectious Diseases, 2020, v. 71, n. 11, p. 2976, doi. 10.1093/cid/ciaa599
By:
- Wei Gu;
- Xianding Deng;
- Reyes, Kevin;
- Hsu, Elaine;
- Wang, Candace;
- Sotomayor-Gonzalez, Alicia;
- Federman, Scot;
- Bushnell, Brian;
- Miller, Steve;
- Chiu, Charles Y.
Publication type:
Article
RNA-Seq Analysis of Gene Expression, Viral Pathogen, and B-Cell/T-Cell Receptor Signatures in Complex Chronic Disease.
Published in:
Clinical Infectious Diseases, 2017, v. 64, n. 4, p. 476, doi. 10.1093/cid/ciw767
By:
- Bouquet, Jerome;
- Gardy, Jennifer L.;
- Brown, Scott;
- Pfeil, Jacob;
- Miller, Ruth R.;
- Morshed, Muhammad;
- Avina-Zubieta, Antonio;
- Shojania, Kam;
- McCabe, Mark;
- Parker, Shoshana;
- Uyaguari, Miguel;
- Federman, Scot;
- Tang, Patrick;
- Steiner, Ted;
- Otterstater, Michael;
- Holt, Rob;
- Moore, Richard;
- Chiu, Charles Y.;
- Patrick, David M.
Publication type:
Article
Diagnosis of Neuroinvasive Astrovirus Infection in an Immunocompromised Adult With Encephalitis by Unbiased Next-Generation Sequencing.
Published in:
Clinical Infectious Diseases, 2015, v. 60, n. 6, p. 919, doi. 10.1093/cid/ciu912
By:
- Naccache, Samia N.;
- Peggs, Karl S.;
- Mattes, Frank M.;
- Phadke, Rahul;
- Garson, Jeremy A.;
- Grant, Paul;
- Samayoa, Erik;
- Federman, Scot;
- Miller, Steve;
- Lunn, Michael P.;
- Gant, Vanya;
- Chiu, Charles Y.
Publication type:
Article
Functional Modulation of IGF-Binding Protein-3 Expression in Melanoma.
Published in:
Journal of Investigative Dermatology, 2010, v. 130, n. 8, p. 2071, doi. 10.1038/jid.2010.70
By:
- Dar, Altaf A.;
- Majid, Shahana;
- Nosrati, Mehdi;
- de Semir, David;
- Federman, Scot;
- Kashani-Sabet, Mohammed
Publication type:
Article
Metagenomic sequencing of stool samples in Bangladeshi infants: virome association with poliovirus shedding after oral poliovirus vaccination.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-71791-4
By:
- Tan, Susanna K.;
- Granados, Andrea C.;
- Bouquet, Jerome;
- Hoy-Schulz, Yana Emmy;
- Green, Lauri;
- Federman, Scot;
- Stryke, Doug;
- Haggerty, Thomas D.;
- Ley, Catherine;
- Yeh, Ming-Te;
- Jannat, Kaniz;
- Maldonado, Yvonne A.;
- Andino, Raul;
- Parsonnet, Julie;
- Chiu, Charles Y.
Publication type:
Article
Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing.
Published in:
Genome Medicine, 2015, v. 7, p. 1, doi. 10.1186/s13073-015-0235-2
By:
- Greninger, Alexander L.;
- Messacar, Kevin;
- Dunnebacke, Thelma;
- Naccache, Samia N.;
- Federman, Scot;
- Bouquet, Jerome;
- Mirsky, David;
- Nomura, Yosuke;
- Yagi, Shigeo;
- Glaser, Carol;
- Vollmer, Michael;
- Press, Craig A.;
- Klenschmidt-DeMasters, Bette K.;
- Dominguez, Samuel R.;
- Chiu, Charles Y.
Publication type:
Article
Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis.
Published in:
Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0220-9
By:
- Greninger, Alexander L.;
- Naccache, Samia N.;
- Federman, Scot;
- Guixia Yu;
- Mbala, Placide;
- Bres, Vanessa;
- Stryke, Doug;
- Bouquet, Jerome;
- Somasekar, Sneha;
- Linnen, Jeffrey M.;
- Dodd, Roger;
- Mulembakani, Prime;
- Schneider, Bradley S.;
- Muyembe-Tamfum, Jean-Jacques;
- Stramer, Susan L.;
- Chiu, Charles Y.
Publication type:
Article
Introduction, Transmission Dynamics, and Fate of Early Severe Acute Respiratory Syndrome Coronavirus 2 Lineages in Santa Clara County, California.
Published in:
2021
By:
- Villarino, Elsa;
- Deng, Xianding;
- Kemper, Carol A;
- Jorden, Michelle A;
- Bonin, Brandon;
- Rudman, Sarah L;
- Han, George S;
- Yu, Guixia;
- Wang, Candace;
- Federman, Scot;
- Bushnell, Brian;
- Consortium, CZB COVIDTracker;
- Wadford, Debra A;
- Lin, Wen;
- Tao, Ying;
- Paden, Clinton R;
- Bhatnagar, Julu;
- MacCannell, Tara;
- Tong, Suxiang;
- Batson, Joshua
Publication type:
journal article

Found: 21