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Development of CD3 cell quantitation algorithms for renal allograft biopsy rejection assessment utilizing open source image analysis software.
Published in:
Virchows Archiv: European Journal of Pathology, 2018, v. 472, n. 2, p. 259, doi. 10.1007/s00428-017-2260-6
By:
- Moon, Andres;
- Smith, Geoffrey H.;
- Kong, Jun;
- Rogers, Thomas E.;
- Ellis, Carla L.;
- Farris, Alton B. “Brad”;
- Farris, Alton B Brad 3rd
Publication type:
Article
Autoimmune pancreatitis-related diabetes: quantitative analysis of endocrine islet cells and inflammatory infiltrate.
Published in:
2010
By:
- Farris III, Alton B.;
- Lauwers, Gregory Y.;
- Deshpande, Vikram;
- Farris, Alton B 3rd
Publication type:
journal article
Dysplasia discrimination in intestinal-type neoplasia of the esophagus and colon via digital image analysis.
Published in:
2016
By:
- Martin, David;
- Braxton, David;
- Farris, Alton;
- Martin, David R;
- Braxton, David R;
- Farris, Alton B
Publication type:
journal article
Optical coherence tomography of small intestine allograft biopsies using a handheld surgical probe.
Published in:
Journal of Biomedical Optics, 2021, v. 26, n. 9, p. 96008, doi. 10.1117/1.JBO.26.9.096008
By:
- Jelly, Evan T.;
- Kwun, Jean;
- Schmitz, Robin;
- Farris, Alton B.;
- Steelman, Zachary A.;
- Sudan, Debra L.;
- Knechtle, Stuart J.;
- Wax, Adam
Publication type:
Article
Assessment of a computerized quantitative quality control tool for whole slide images of kidney biopsies.
Published in:
Journal of Pathology, 2021, v. 253, n. 3, p. 268, doi. 10.1002/path.5590
By:
- Chen, Yijiang;
- Zee, Jarcy;
- Smith, Abigail;
- Jayapandian, Catherine;
- Hodgin, Jeffrey;
- Howell, David;
- Palmer, Matthew;
- Thomas, David;
- Cassol, Clarissa;
- Farris, Alton B;
- Perkinson, Kathryn;
- Madabhushi, Anant;
- Barisoni, Laura;
- Janowczyk, Andrew
Publication type:
Article
C3 complement inhibition prevents antibody-mediated rejection and prolongs renal allograft survival in sensitized non-human primates.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25745-7
By:
- Schmitz, Robin;
- Fitch, Zachary W.;
- Schroder, Paul M.;
- Choi, Ashley Y.;
- Manook, Miriam;
- Yoon, Janghoon;
- Song, Mingqing;
- Yi, John S.;
- Khandelwal, Sanjay;
- Arepally, Gowthami M.;
- Farris, Alton B.;
- Reis, Edimara S.;
- Lambris, John D.;
- Kwun, Jean;
- Knechtle, Stuart J.
Publication type:
Article
Overlapping pathways to transplant glomerulopathy: chronic humoral rejection, hepatitis C infection, and thrombotic microangiopathy.
Published in:
Kidney International, 2011, v. 80, n. 8, p. 879, doi. 10.1038/ki.2011.194
By:
- Baid-Agrawal, Seema;
- Farris, Alton B;
- Pascual, Manuel;
- Mauiyyedi, Shamila;
- Farrell, Mary Lin;
- Tolkoff-Rubin, Nina;
- Collins, A Bernard;
- Frei, Ulrich;
- Colvin, Robert B
Publication type:
Article
Emerging role of B cells in chronic allograft dysfunction.
Published in:
Kidney International, 2010, v. 78, p. S13, doi. 10.1038/ki.2010.436
By:
- Colvin, Robert B.;
- Hirohashi, Tsutomu;
- Farris, Alton B.;
- Minnei, Francesca;
- Collins, A. Bernard;
- Smith, R. Neal
Publication type:
Article
IL-21 Biased Alemtuzumab Induced Chronic Antibody-Mediated Rejection Is Reversed by LFA-1 Costimulation Blockade.
Published in:
Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02323
By:
- Kwun, Jean;
- Park, Jaeberm;
- Yi, John S.;
- Farris, Alton B.;
- Kirk, Allan D.;
- Knechtle, Stuart J.
Publication type:
Article
Intestine-Specific Deletion of Microsomal Triglyceride Transfer Protein Increases Mortality in Aged Mice.
Published in:
PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0101828
By:
- Liang, Zhe;
- Xie, Yan;
- Dominguez, Jessica A.;
- Breed, Elise R.;
- Yoseph, Benyam P.;
- Burd, Eileen M.;
- Farris, Alton B.;
- Davidson, Nicholas O.;
- Coopersmith, Craig M.
Publication type:
Article
Phenotypic T Cell Exhaustion in a Murine Model of Bacterial Infection in the Setting of Pre-Existing Malignancy.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0093523
By:
- Mittal, Rohit;
- Wagener, Maylene;
- Breed, Elise R.;
- Liang, Zhe;
- Yoseph, Benyam P.;
- Burd, Eileen M.;
- Farris III, Alton B.;
- Coopersmith, Craig M.;
- Ford, Mandy L.
Publication type:
Article
Chronic Alcohol Ingestion Increases Mortality and Organ Injury in a Murine Model of Septic Peritonitis
Published in:
PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0062792
By:
- Yoseph, Benyam P.;
- Breed, Elise;
- Overgaard, Christian E.;
- Ward, Christina J.;
- Liang, Zhe;
- Wagener, Maylene E.;
- Lexcen, Daniel R.;
- Lusczek, Elizabeth R.;
- Beilman, Greg J.;
- Burd, Eileen M.;
- Farris, Alton B.;
- Guidot, David M.;
- Koval, Michael;
- Ford, Mandy L.;
- Coopersmith, Craig M.
Publication type:
Article
Eosinophilic granulomatous gastrointestinal and hepatic abscesses attributable to basidiobolomycosis and fasciolias: a simultaneous emergence in Iraqi Kurdistan.
Published in:
BMC Infectious Diseases, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1471-2334-13-91
By:
- Hassan, Hemmin A.;
- Majid, Runnak A.;
- Rashid, Nawshirwan G.;
- Nuradeen, Bryar E.;
- Abdulkarim, Qalandar H.;
- Hawramy, Tahir A.;
- Rashid, Rekawt M.;
- Farris, Alton B.;
- Guarner, Jeannette;
- Hughson, Michael D.
Publication type:
Article
Eosinophilic granulomatous gastrointestinal and hepatic abscesses attributable to basidiobolomycosis and fasciolias: a simultaneous emergence in Iraqi Kurdistan.
Published in:
2013
By:
- Hassan, Hemmin A;
- Majid, Runnak A;
- Rashid, Nawshirwan G;
- Nuradeen, Bryar E;
- Abdulkarim, Qalandar H;
- Hawramy, Tahir A;
- Rashid, Rekawt M;
- Farris, Alton B;
- Guarner, Jeannette;
- Hughson, Michael D
Publication type:
journal article
Liver MRI and histological correlates in chronic liver disease on multiphase gadolinium-enhanced 3D gradient echo imaging.
Published in:
Journal of Magnetic Resonance Imaging, 2012, v. 36, n. 2, p. 422, doi. 10.1002/jmri.23668
By:
- Martin, Diego R.;
- Lauenstein, Thomas;
- Kalb, Bobby;
- Lurie, Christina;
- Kitajima, Hiroumi;
- Sharma, Puneet;
- Salman, Khalil;
- Moreira, Roger;
- Farris, Alton B.;
- Spivey, James;
- Martinez, Enrique;
- Hanish, Steve;
- Adsay, Volkan
Publication type:
Article
Quantitative assessment of liver fibrosis by digital image analysis reveals correlation with qualitative clinical fibrosis staging in liver transplant patients.
Published in:
PLoS ONE, 2020, v. 15, n. 9, p. 1, doi. 10.1371/journal.pone.0239624
By:
- Jiang, Kun;
- Mohammad, Mohammad K.;
- Dar, Wasim A.;
- Kong, Jun;
- Farris, Alton B.
Publication type:
Article
Correction: Chronic Alcohol Ingestion Increases Mortality and Organ Injury in a Murine Model of Septic Peritonitis.
Published in:
2020
By:
- Yoseph, Benyam P.;
- Breed, Elise;
- Overgaard, Christian E.;
- Ward, Christina J.;
- Liang, Zhe;
- Wagener, Maylene E.;
- Lexcen, Daniel R.;
- Lusczek, Elizabeth R.;
- Beilman, Greg J.;
- Burd, Eileen M.;
- Farris, Alton B.;
- Guidot, David M.;
- Koval, Michael;
- Ford, Mandy L.;
- Coopersmith, Craig M.
Publication type:
Correction Notice
Western diet‐induced increase in colonic bile acids compromises epithelial barrier in nonalcoholic steatohepatitis.
Published in:
FASEB Journal, 2020, v. 34, n. 5, p. 7089, doi. 10.1096/fj.201902687R
By:
- Gupta, Biki;
- Liu, Yunshan;
- Chopyk, Daniel M.;
- Rai, Ravi P.;
- Desai, Chirayu;
- Kumar, Pradeep;
- Farris, Alton B.;
- Nusrat, Asma;
- Parkos, Charles A.;
- Anania, Frank A.;
- Raeman, Reben
Publication type:
Article
Artificial intelligence and algorithmic computational pathology: an introduction with renal allograft examples.
Published in:
Histopathology, 2021, v. 78, n. 6, p. 791, doi. 10.1111/his.14304
By:
- Farris, Alton B;
- Vizcarra, Juan;
- Amgad, Mohamed;
- Cooper, Lee A D;
- Gutman, David;
- Hogan, Julien
Publication type:
Article
Low‐grade fibromyxoid sarcoma: a potentially useful histologic finding.
Published in:
Histopathology, 2020, v. 77, n. 2, p. 329, doi. 10.1111/his.14142
By:
- Logan, Suzanna J.;
- Perricone, Adam;
- Farris, Alton B.;
- Edgar, Mark
Publication type:
Article
Autoimmune pancreatitis-related cholecystitis: a morphologically and immunologically distinctive form of lymphoplasmacytic sclerosing cholecystitis.
Published in:
Histopathology, 2009, v. 54, n. 7, p. 829, doi. 10.1111/j.1365-2559.2009.03315.x
By:
- Wei-Lia Wang;
- Farris, Alton B.;
- Lauwers, Gregory Y.;
- Deshpande, Vikram
Publication type:
Article
Measuring the Impact of Targeting FcRn-Mediated IgG Recycling on Donor-Specific Alloantibodies in a Sensitized NHP Model.
Published in:
Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.660900
By:
- Manook, Miriam;
- Flores, Walter J.;
- Schmitz, Robin;
- Fitch, Zachary;
- Yoon, Janghoon;
- Bae, Yeeun;
- Shaw, Brian;
- Kirk, Allan;
- Harnois, Melissa;
- Permar, Sallie;
- Farris, Alton B.;
- Magnani, Diogo M.;
- Kwun, Jean;
- Knechtle, Stuart
Publication type:
Article
Renal allograft granulomatous interstitial nephritis: observations of an uncommon injury pattern in 22 transplant recipients.
Published in:
Clinical Kidney Journal, 2017, v. 10, n. 2, p. 240, doi. 10.1093/ckj/sfw117
By:
- Farris, Alton B.;
- Ellis, Carla L.;
- Rogers, Thomas E.;
- Chon, W. James;
- Chang, Anthony;
- Meehan, Shane M.
Publication type:
Article
GPRC5A suppresses protein synthesis at the endoplasmic reticulum to prevent radiation-induced lung tumorigenesis.
Published in:
Nature Communications, 2016, v. 7, n. 6, p. 11795, doi. 10.1038/ncomms11795
By:
- Wang, Jian;
- Farris, Alton B.;
- Xu, Kaiming;
- Wang, Ping;
- Zhang, Xiangming;
- Duong, Duc M.;
- Yi, Hong;
- Shu, Hui-Kuo;
- Sun, Shi-Yong;
- Wang, Ya
Publication type:
Article
Oxaliplatin-induced hepatoportal sclerosis, portal hypertension, and variceal bleeding successfully treated with transjugular intrahepatic portosystemic shunt.
Published in:
2012
By:
- Lawal, Taoreed O;
- Farris, Alton B;
- El-Rayes, Bassel F;
- Subramanian, Ram M;
- Kim, Hyun S
Publication type:
Journal Article
Renal Medullary and Cortical Correlates in Fibrosis, Epithelial Mass, Microvascularity, and Microanatomy Using Whole Slide Image Analysis Morphometry.
Published in:
PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0161019
By:
- Farris, Alton B.;
- Ellis, Carla L.;
- Rogers, Thomas E.;
- Lawson, Diane;
- Cohen, Cynthia;
- Rosen, Seymour
Publication type:
Article
Comparison of Outcomes between Individuals with Pure and Mixed Lupus Nephritis: A Retrospective Study.
Published in:
PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0157485
By:
- Ilori, Titilayo O.;
- Enofe, Nosayaba;
- Oommen, Anju;
- Cobb, Jason;
- Navarrete, Jose;
- Adedinsewo, Demilade A.;
- Oshikoya, Oluwatobiloba;
- Fevrier, Helene;
- Farris, Alton B.;
- Plantinga, Laura;
- Ojo, Akinlolu O.
Publication type:
Article
Murine Lung Cancer Increases CD4+ T Cell Apoptosis and Decreases Gut Proliferative Capacity in Sepsis.
Published in:
PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0149069
By:
- Lyons, John D.;
- Mittal, Rohit;
- Fay, Katherine T.;
- Chen, Ching-Wen;
- Liang, Zhe;
- Margoles, Lindsay M.;
- Burd, Eileen M.;
- Farris, Alton B.;
- Ford, Mandy L.;
- Coopersmith, Craig M.
Publication type:
Article
Relative Effectiveness at 1 Gy after Acute and Fractionated Exposures of Heavy Ions with Different Linear Energy Transfer for Lung Tumorigenesis.
Published in:
Radiation Research, 2015, v. 183, n. 2, p. 233, doi. 10.1667/RR13884.1
By:
- Wang, Xiang;
- Farris III, Alton B.;
- Wang, Ping;
- Zhang, Xiangming;
- Wang, Hongyan;
- Wang, Ya
Publication type:
Article
Heat shock protein 90 promotes epithelial to mesenchymal transition, invasion, and migration in colorectal cancer.
Published in:
Molecular Carcinogenesis, 2015, v. 54, n. 10, p. 1147, doi. 10.1002/mc.22185
By:
- Nagaraju, Ganji Purnachandra;
- Long, Tua‐Elisabeth;
- Park, Wungki;
- Landry, Jerome C.;
- Taliaferro‐Smith, LaTonia;
- Farris, Alton B.;
- Diaz, Roberto;
- El‐Rayes, Bassel F.
Publication type:
Article
Myosin Light Chain Kinase Knockout Improves Gut Barrier Function and Confers a Survival Advantage in Polymicrobial Sepsis.
Published in:
Molecular Medicine, 2017, v. 23, p. 155, doi. 10.2119/molmed.2016.00256
By:
- Lorentz, C. Adam;
- Zhe Liang;
- Mei Meng;
- Ching-Wen Chen;
- Yoseph, Benyam P.;
- Breed, Elise R.;
- Mittal, Rohit;
- Klingensmith, Nathan J.;
- Farris, Alton B.;
- Burd, Eileen M.;
- Koval, Michael;
- Ford, Mandy L.;
- Coopersmith, Craig M.
Publication type:
Article
Differential expression and prognostic value of ERCC1 and thymidylate synthase in resected gastric adenocarcinoma.
Published in:
Cancer (0008543X), 2013, v. 119, n. 17, p. 3242, doi. 10.1002/cncr.28175
By:
- Squires, Malcolm H.;
- Fisher, Sarah B.;
- Fisher, Kevin E.;
- Patel, Sameer H.;
- Kooby, David A.;
- El‐Rayes, Bassel F.;
- Staley, Charles A.;
- Farris, Alton B.;
- Maithel, Shishir K.
Publication type:
Article
Excision repair cross-complementing gene-1, ribonucleotide reductase subunit M1, ribonucleotide reductase subunit M2, and human equilibrative nucleoside transporter-1 expression and prognostic value in biliary tract malignancy.
Published in:
Cancer (0008543X), 2013, v. 119, n. 2, p. 454, doi. 10.1002/cncr.27739
By:
- Fisher, Sarah B.;
- Fisher, Kevin E.;
- Patel, Sameer H.;
- Lim, Matthew G.;
- Kooby, David A.;
- El‐Rayes, Bassel F.;
- Staley, Charles A.;
- Adsay, N. Volkan;
- Farris, Alton B.;
- Maithel, Shishir K.
Publication type:
Article
HER2 in resected gastric cancer: Is there prognostic value?
Published in:
Journal of Surgical Oncology, 2014, v. 109, n. 2, p. 61, doi. 10.1002/jso.23456
By:
- Fisher, Sarah B.;
- Fisher, Kevin E.;
- Squires, Malcolm H.;
- Patel, Sameer H.;
- Kooby, David A.;
- El‐Rayes, Bassel F.;
- Cardona, Kenneth;
- Russell, Maria C.;
- Staley, Charles A.;
- Farris, Alton B.;
- Maithel, Shishir K.
Publication type:
Article
Prolonged xenokidney graft survival in sensitized NHP recipients by expression of multiple human transgenes in a triple knockout pig.
Published in:
Science Translational Medicine, 2024, v. 16, n. 751, p. 1, doi. 10.1126/scitranslmed.adk6152
By:
- Manook, Miriam;
- Olaso, Danae;
- Anwar, Imran;
- DeLaura, Isabel;
- Yoon, Janghoon;
- Bae, Yeeun;
- Barbas, Andrew;
- Shaw, Brian;
- Moris, Dimitrios;
- Song, Mingqing;
- Farris, Alton B.;
- Stiede, Kathryn;
- Youd, Michele;
- Knechtle, Stuart;
- Kwun, Jean
Publication type:
Article
Body Mass Index and Molecular Subtypes of Colorectal Cancer.
Published in:
JNCI: Journal of the National Cancer Institute, 2023, v. 115, n. 2, p. 165, doi. 10.1093/jnci/djac215
By:
- Murphy, Neil;
- Newton, Christina C;
- Song, Mingyang;
- Papadimitriou, Nikos;
- Hoffmeister, Michael;
- Phipps, Amanda I;
- Harrison, Tabitha A;
- Newcomb, Polly A;
- Aglago, Elom K;
- Berndt, Sonja I;
- Brenner, Hermann;
- Buchanan, Daniel D;
- Cao, Yin;
- Chan, Andrew T;
- Chen, Xuechen;
- Cheng, Iona;
- Chang-Claude, Jenny;
- Dimou, Niki;
- Drew, David;
- Farris, Alton B
Publication type:
Article
Correlation Patterns Among B7 Family Ligands and Tryptophan Degrading Enzymes in Hepatocellular Carcinoma.
Published in:
Frontiers in Oncology, 2020, v. 10, p. N.PAG, doi. 10.3389/fonc.2020.01632
By:
- Chinnadurai, Raghavan;
- Scandolara, Rafaela;
- Alese, Olatunji B.;
- Arafat, Dalia;
- Ravindranathan, Deepak;
- Farris, Alton B.;
- El-Rayes, Bassel F.;
- Gibson, Greg
Publication type:
Article
A data model and database for high-resolution pathology analytical image informatics.
Published in:
Journal of Pathology Informatics, 2011, v. 2, n. 1, p. 162, doi. 10.4103/2153-3539.83192
By:
- Wang, Fusheng;
- Kong, Jun;
- Cooper, Lee;
- Pan, Tony;
- Kurc, Tahsin;
- Chen, Wenjin;
- Sharma, Ashish;
- Niedermayr, Cristobal;
- Oh, Tae W.;
- Brat, Daniel;
- Farris, Alton B.;
- Foran, David J.;
- Saltz, Joel
Publication type:
Article
Establishment of human metastatic colorectal cancer model in rabbit liver: A pilot study.
Published in:
PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177212
By:
- Prieto, Veronica;
- Ludwig, Johannes M.;
- Farris, Alton B.;
- Nagaraju, Ganji Purnachandra;
- Lawal, Taoreed O.;
- El-Rayes, Bassel;
- Kim, Hyun S.
Publication type:
Article
Glomerular number and size in autopsy kidneys: The relationship to birth weight.
Published in:
Kidney International, 2003, v. 63, n. 6, p. 2113, doi. 10.1046/j.1523-1755.2003.00018.x
By:
- Hughson, Michael;
- Farris, Alton B.;
- Douglas-Denton, Rebecca;
- Hoy, Wendy E.;
- Bertram, John F.
Publication type:
Article
Emerging role of B cells in chronic allograft dysfunction.
Published in:
Kidney International Supplement, 2010, v. 78, p. S13, doi. 10.1038/ki.2010.436
By:
- Colvin, Robert B.;
- Hirohashi, Tsutomu;
- Farris, Alton B.;
- Minnei, Francesca;
- Collins, A. Bernard;
- Smith, R. Neal
Publication type:
Article

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