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Integrated Genome-Wide Analysis of MicroRNA Expression Quantitative Trait Loci in Pig Longissimus Dorsi Muscle.
Published in:
Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.644091
By:
- Daza, Kaitlyn R.;
- Velez-Irizarry, Deborah;
- Casiró, Sebastian;
- Steibel, Juan P.;
- Raney, Nancy E.;
- Bates, Ronald O.;
- Ernst, Catherine W.
Publication type:
Article
Integrated Genome-Wide Analysis of MicroRNA Expression Quantitative Trait Loci in Pig Longissimus Dorsi Muscle.
Published in:
Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.644091
By:
- Daza, Kaitlyn R.;
- Velez-Irizarry, Deborah;
- Casiró, Sebastian;
- Steibel, Juan P.;
- Raney, Nancy E.;
- Bates, Ronald O.;
- Ernst, Catherine W.
Publication type:
Article
Weaning Induces Stress-Dependent DNA Methylation and Transcriptional Changes in Piglet PBMCs.
Published in:
Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.633564
By:
- Corbett, Ryan J.;
- Luttman, Andrea M.;
- Wurtz, Kaitlin E.;
- Siegford, Janice M.;
- Raney, Nancy E.;
- Ford, Laura M.;
- Ernst, Catherine W.
Publication type:
Article
Genome-Wide Assessment of DNA Methylation in Chicken Cardiac Tissue Exposed to Different Incubation Temperatures and CO2 Levels.
Published in:
Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.558189
By:
- Corbett, Ryan J.;
- te Pas, Marinus F. W.;
- van den Brand, Henry;
- Groenen, Martien A. M.;
- Crooijmans, Richard P. M. A.;
- Ernst, Catherine W.;
- Madsen, Ole
Publication type:
Article
Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data.
Published in:
BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0207-6
By:
- Peñagaricano, Francisco;
- Valente, Bruno D.;
- Steibel, Juan P.;
- Bates, Ronald O.;
- Ernst, Catherine W.;
- Khatib, Hasan;
- Rosa, Guilherme J. M.
Publication type:
Article
A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07078-9
By:
- Halstead, Michelle M.;
- Kern, Colin;
- Saelao, Perot;
- Wang, Ying;
- Chanthavixay, Ganrea;
- Medrano, Juan F.;
- Van Eenennaam, Alison L.;
- Korf, Ian;
- Tuggle, Christopher K.;
- Ernst, Catherine W.;
- Zhou, Huaijun;
- Ross, Pablo J.
Publication type:
Article
Selective Transcriptional Profiling and Data Analysis Strategies for Expression Quantitative Trait Loci Mapping in Outbred F2 Populations.
Published in:
Genetics, 2008, v. 180, n. 3, p. 1679, doi. 10.1534/genetics.108.090969
By:
- Cardoso, Fernando F.;
- Rosa, Guilherme J. M.;
- Steibel, Juan P.;
- Ernst, Catherine W.;
- Bates, Ronald O.;
- Tempelman, Robert J.
Publication type:
Article
Pig genome functional annotation enhances the biological interpretation of complex traits and human disease.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26153-7
By:
- Pan, Zhangyuan;
- Yao, Yuelin;
- Yin, Hongwei;
- Cai, Zexi;
- Wang, Ying;
- Bai, Lijing;
- Kern, Colin;
- Halstead, Michelle;
- Chanthavixay, Ganrea;
- Trakooljul, Nares;
- Wimmers, Klaus;
- Sahana, Goutam;
- Su, Guosheng;
- Lund, Mogens Sandø;
- Fredholm, Merete;
- Karlskov-Mortensen, Peter;
- Ernst, Catherine W.;
- Ross, Pablo;
- Tuggle, Christopher K.;
- Fang, Lingzhao
Publication type:
Article
Evidence of evolutionary history and selective sweeps in the genome of Meishan pig reveals its genetic and phenotypic characterization.
Published in:
GigaScience, 2018, v. 7, n. 5, p. N.PAG, doi. 10.1093/gigascience/giy058
By:
- Zhao, Pengju;
- Yu, Ying;
- Feng, Wen;
- Du, Heng;
- Yu, Jian;
- Kang, Huimin;
- Zheng, Xianrui;
- Wang, Zhiquan;
- Liu, George E;
- Ernst, Catherine W
Publication type:
Article
Transcriptome annotation of 17 porcine tissues using nanopore sequencing technology.
Published in:
Animal Genetics, 2023, v. 54, n. 1, p. 35, doi. 10.1111/age.13274
By:
- Li, Jinghui;
- Guan, Dailu;
- Halstead, Michelle M.;
- Islas‐Trejo, Alma D.;
- Goszczynski, Daniel E.;
- Ernst, Catherine W.;
- Cheng, Hao;
- Ross, Pablo;
- Zhou, Huaijun
Publication type:
Article
Genome-Wide Linkage Analysis of Global Gene Expression in Loin Muscle Tissue Identifies Candidate Genes in Pigs.
Published in:
PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0016766
By:
- Steibel, Juan Pedro;
- Bates, Ronald O.;
- Rosa, Guilherme J. M.;
- Tempelman, Robert J.;
- Rilington, Valencia D.;
- Ragavendran, Ashok;
- Raney, Nancy E.;
- Ramos, Antonio Marcos;
- Cardoso, Fernando F.;
- Edwards, David B.;
- Ernst, Catherine W.
Publication type:
Article
Gene expression profiling in hepatic tissue of newly weaned pigs fed pharmacological zinc and phytase supplemented diets.
Published in:
BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-421
By:
- Martínez-Montemayor, Michelle M.;
- Hill, Gretchen M.;
- Raney, Nancy E.;
- Rilington, Valencia D.;
- Tempelman, Robert J.;
- Link, Jane E.;
- Wilkinson, Christopher P.;
- Ramos, Antonio M.;
- Ernst, Catherine W.
Publication type:
Article
Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-246
By:
- Gualdrón Duarte, Jose L.;
- Cantet, Rodolfo J. C.;
- Bates, Ronald O.;
- Ernst, Catherine W.;
- Raney, Nancy E.;
- Steibel, Juan P.
Publication type:
Article
Genomic Prediction Accounting for Residual Heteroskedasticity.
Published in:
G3: Genes | Genomes | Genetics, 2016, v. 6, n. 1, p. 1, doi. 10.1534/g3.115.022897
By:
- Zhining Ou;
- Tempelman, Robert J.;
- Steibel, Juan P.;
- Ernst, Catherine W.;
- Bates, Ronald O.;
- Bello, Nora M.
Publication type:
Article
Mapping splice QTLs reveals distinct transcriptional and post-transcriptional regulatory variation of gene expression and identifies putative alternative splicing variation mediating complex trait variation in pigs.
Published in:
BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09314-4
By:
- Zhang, Fei;
- Velez-Irizarry, Deborah;
- Ernst, Catherine W.;
- Huang, Wen
Publication type:
Article
Methods of tagSNP selection and other variables affecting imputation accuracy in swine.
Published in:
BMC Genetics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2156-14-8
By:
- Badke, Yvonne M.;
- Bates, Ronald O.;
- Ernst, Catherine W.;
- Schwab, Clint;
- Fix, Justin;
- Van Tassell, Curtis P.;
- Steibel, Juan P.
Publication type:
Article
Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels.
Published in:
BMC Genetics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2156-14-38
By:
- Duarte, Jose L. Gualdrón;
- Bates, Ronald O.;
- Ernst, Catherine W.;
- Raney, Nancy E.;
- Cantet, Rodolfo J. C.;
- Steibel, Juan P.
Publication type:
Article
Application of alternative models to identify QTL for growth traits in an F2 Duroc x Pietrain pig resource population.
Published in:
BMC Genetics, 2010, v. 11, p. 97, doi. 10.1186/1471-2156-11-97
By:
- Igseo Choi;
- Steibel, Juan P.;
- Bates, Ronald O.;
- Raney, Nancy E.;
- Rumph, Janice M.;
- Ernst, Catherine W.
Publication type:
Article
Evidence for transcriptome-wide RNA editing among Sus scrofa PRE-1 SINE elements.
Published in:
BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3766-7
By:
- Funkhouser, Scott A.;
- Steibel, Juan P.;
- Bates, Ronald O.;
- Raney, Nancy E.;
- Schenk, Darius;
- Ernst, Catherine W.
Publication type:
Article
Deciphering Sex-Specific Genetic Architectures Using Local Bayesian Regressions.
Published in:
Genetics, 2020, v. 215, n. 1, p. 231, doi. 10.1534/genetics.120.303120
By:
- Funkhouser, Scott A.;
- Vazquez, Ana I.;
- Steibel, Juan P.;
- Ernst, Catherine W.;
- de los Campos, Gustavo
Publication type:
Article
Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-018-5386-2
By:
- Velez-Irizarry, Deborah;
- Casiro, Sebastian;
- Daza, Kaitlyn R.;
- Bates, Ronald O.;
- Raney, Nancy E.;
- Steibel, Juan P.;
- Ernst, Catherine W.
Publication type:
Article
Maternal resilience to gestational social stress impacts growth and behavior of suckling pigs.
Published in:
Journal of Animal Science, 2024, v. 102, p. 414, doi. 10.1093/jas/skae234.471
By:
- Luttman, Andrea M.;
- Siegford, Janice M.;
- Raney, Nancy E.;
- Ernst, Catherine W.
Publication type:
Article
DNA methylation patterns and transcriptional regulation during pig fetal skeletal muscle development.
Published in:
2024
By:
- Ernst, Catherine W.
Publication type:
Abstract
Can Associations Between Qualitative Descriptors and Quantitative Behavioral Measures in Nursery Age Pigs Improve Interpretation of Behavioral studies?
Published in:
Journal of Animal Science, 2023, v. 101, p. 507, doi. 10.1093/jas/skad281.599
By:
- Luttman, Andrea M.;
- Siegford, Janice M.;
- Ernst, Catherine W.
Publication type:
Article
Correlations of NR3C1 Gene Expression with Pork Quality and Carcass Characteristics.
Published in:
Journal of Animal Science, 2023, v. 101, p. 358, doi. 10.1093/jas/skad341.407
By:
- Schmidt, Grace E.;
- Luttman, Andrea M.;
- Steibel, Juan P.;
- Raney, Nancy E.;
- Ernst, Catherine W.
Publication type:
Article
Relationship of Resiliency to Weaning Stress with Growth, Carcass, and Meat Quality Traits in Pigs.
Published in:
2023
By:
- Luttman, Andrea M.;
- Schmidt, Grace E.;
- Raney, Nancy E.;
- Steibel, Juan P.;
- Ernst, Catherine W.
Publication type:
Abstract
Associations Between Resilience to Weaning Stress and Startle Response in Nursery-Age Gilts.
Published in:
2023
By:
- Lee, Bora;
- Luttman, Andrea M.;
- Ernst, Catherine W.;
- Raney, Nancy E.;
- Steibel, Juan P.;
- Siegford, Janice M.
Publication type:
Abstract
Associations between Resilience to Early-Life Stress and Behavior in Finishing Gilts.
Published in:
2022
By:
- Luttman, Andrea M.;
- Lee, Bora;
- Siegford, Janice M.;
- Raney, Nancy E.;
- Steibel, Juan P.;
- Ernst, Catherine W.
Publication type:
Abstract
Time budgets of group-housed pigs in relation to social aggression and production.
Published in:
Journal of Animal Science, 2021, v. 99, n. 5, p. 1, doi. 10.1093/jas/skab110
By:
- O′Malley, Carly I.;
- Steibel, Juan P.;
- Bates, Ronald O.;
- Ernst, Catherine W.;
- Siegford, Janice M.
Publication type:
Article
Estimation of direct and social effects of feeding duration in growing pigs using records from automatic feeding stations.
Published in:
Journal of Animal Science, 2021, v. 99, n. 5, p. 1, doi. 10.1093/jas/skab042
By:
- Angarita, Belcy K;
- Han, Junjie;
- Cantet, Rodolfo J C;
- Chewning, Sarah K;
- Wurtz, Kaitlin E;
- Siegford, Janice M;
- Ernst, Catherine W;
- Steibel, Juan Pedro
Publication type:
Article
Estimation of indirect social genetic effects for skin lesion count in group-housed pigs by quantifying behavioral interactions.
Published in:
Journal of Animal Science, 2019, v. 97, n. 9, p. 3658, doi. 10.1093/jas/skz244
By:
- Angarita, Belcy K;
- Cantet, Rodolfo J C;
- Wurtz, Kaitlin E;
- O'malley, Carli I;
- Siegford, Janice M;
- Ernst, Catherine W;
- Turner, Simon P;
- Steibel, Juan P
Publication type:
Article
Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1741-8
By:
- Schroyen, Martine;
- Steibel, Juan P.;
- Koltes, James E.;
- Igseo Choi;
- Raney, Nancy E.;
- Eisley, Christopher;
- Fritz-Waters, Eric;
- Reecy, James M.;
- Dekkers, Jack C. M.;
- Rowland, Robert R. R.;
- Lunney, Joan K.;
- Ernst, Catherine W.;
- Tuggle, Christopher K.
Publication type:
Article
Estimation of linkage disequilibrium in four US pig breeds.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-24
By:
- Badke, Yvonne M.;
- Bates, Ronald O.;
- Ernst, Catherine W.;
- Schwab, Clint;
- Steibel, Juan P.
Publication type:
Article
Transcriptional profiling identifies differentially expressed genes in developing turkey skeletal muscle.
Published in:
BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-143
By:
- Sporer, Kelly RB;
- Tempelman, Robert J;
- Ernst, Catherine W;
- Reed, Kent M;
- Velleman, Sandra G;
- Strasburg, Gale M
Publication type:
Article
Transcriptional profiling identifies differentially expressed genes in developing turkey skeletal muscle.
Published in:
BMC Genomics, 2011, v. 12, n. 1, p. 143, doi. 10.1186/1471-2164-12-143
By:
- Sporer, Kelly R. B.;
- Tempelman, Robert J.;
- Ernst, Catherine W.;
- Reed, Kent M.;
- Velleman, Sandra G.;
- Strasburg, Gale M.
Publication type:
Article
Comparative mapping of genes flanking the human chromosome 12 evolutionary breakpoint in the pig.
Published in:
Cytogenetic & Genome Research, 2003, v. 102, n. 1-4, p. 139, doi. 10.1159/000075739
By:
- Farber, C. R.;
- Raney, N. E.;
- Rilington, V. D.;
- Venta, P. J.;
- Ernst, Catherine W.
Publication type:
Article
The Social Life of Pigs: Changes in Affiliative and Agonistic Behaviors following Mixing.
Published in:
Animals (2076-2615), 2022, v. 12, n. 2, p. 206, doi. 10.3390/ani12020206
By:
- O'Malley, Carly I.;
- Steibel, Juan P.;
- Bates, Ronald O.;
- Ernst, Catherine W.;
- Siegford, Janice M.
Publication type:
Article
Heritage Meats.
Published in:
Journal of Food Distribution Research, 2007, v. 38, n. 1, p. 205
By:
- Ernst, Stan;
- Sanders, Daniel J.;
- Ernst, Catherine W.
Publication type:
Article
Assessment of DNA methylation in porcine immune cells reveals novel regulatory elements associated with cell-specific gene expression and immune capacity traits.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08773-5
By:
- Corbett, Ryan J.;
- Luttman, Andrea M.;
- Herrera-Uribe, Juber;
- Liu, Haibo;
- Raney, Nancy E.;
- Grabowski, Jenna M.;
- Loving, Crystal L.;
- Tuggle, Christopher K.;
- Ernst, Catherine W.
Publication type:
Article

Found: 39

Integrated Genome-Wide Analysis of MicroRNA Expression Quantitative Trait Loci in Pig Longissimus Dorsi Muscle.

Integrated Genome-Wide Analysis of MicroRNA Expression Quantitative Trait Loci in Pig Longissimus Dorsi Muscle.

Weaning Induces Stress-Dependent DNA Methylation and Transcriptional Changes in Piglet PBMCs.

Genome-Wide Assessment of DNA Methylation in Chicken Cardiac Tissue Exposed to Different Incubation Temperatures and CO<sub>2</sub> Levels.

Exploring causal networks underlying fat deposition and muscularity in pigs through the integration of phenotypic, genotypic and transcriptomic data.

A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues.

Selective Transcriptional Profiling and Data Analysis Strategies for Expression Quantitative Trait Loci Mapping in Outbred F<sub>2</sub> Populations.

Pig genome functional annotation enhances the biological interpretation of complex traits and human disease.

Evidence of evolutionary history and selective sweeps in the genome of Meishan pig reveals its genetic and phenotypic characterization.

Transcriptome annotation of 17 porcine tissues using nanopore sequencing technology.

Genome-Wide Linkage Analysis of Global Gene Expression in Loin Muscle Tissue Identifies Candidate Genes in Pigs.

Gene expression profiling in hepatic tissue of newly weaned pigs fed pharmacological zinc and phytase supplemented diets.

Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations.

Genomic Prediction Accounting for Residual Heteroskedasticity.

Mapping splice QTLs reveals distinct transcriptional and post-transcriptional regulatory variation of gene expression and identifies putative alternative splicing variation mediating complex trait variation in pigs.

Methods of tagSNP selection and other variables affecting imputation accuracy in swine.

Genotype imputation accuracy in a F2 pig population using high density and low density SNP panels.

Application of alternative models to identify QTL for growth traits in an F<sub>2</sub> Duroc x Pietrain pig resource population.

Evidence for transcriptome-wide RNA editing among Sus scrofa PRE-1 SINE elements.

Deciphering Sex-Specific Genetic Architectures Using Local Bayesian Regressions.

Genetic control of longissimus dorsi muscle gene expression variation and joint analysis with phenotypic quantitative trait loci in pigs.

Maternal resilience to gestational social stress impacts growth and behavior of suckling pigs.

DNA methylation patterns and transcriptional regulation during pig fetal skeletal muscle development.

Can Associations Between Qualitative Descriptors and Quantitative Behavioral Measures in Nursery Age Pigs Improve Interpretation of Behavioral studies?

Correlations of NR3C1 Gene Expression with Pork Quality and Carcass Characteristics.

Relationship of Resiliency to Weaning Stress with Growth, Carcass, and Meat Quality Traits in Pigs.

Associations Between Resilience to Weaning Stress and Startle Response in Nursery-Age Gilts.

Associations between Resilience to Early-Life Stress and Behavior in Finishing Gilts.

Time budgets of group-housed pigs in relation to social aggression and production.

Estimation of direct and social effects of feeding duration in growing pigs using records from automatic feeding stations.

Estimation of indirect social genetic effects for skin lesion count in group-housed pigs by quantifying behavioral interactions<sup />.

Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection.

Estimation of linkage disequilibrium in four US pig breeds.

Transcriptional profiling identifies differentially expressed genes in developing turkey skeletal muscle.

Transcriptional profiling identifies differentially expressed genes in developing turkey skeletal muscle.

Comparative mapping of genes flanking the human chromosome 12 evolutionary breakpoint in the pig.

The Social Life of Pigs: Changes in Affiliative and Agonistic Behaviors following Mixing.

Heritage Meats.

Assessment of DNA methylation in porcine immune cells reveals novel regulatory elements associated with cell-specific gene expression and immune capacity traits.