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The gill-associated microbiome is the main source of wood plant polysaccharide hydrolases and secondary metabolite gene clusters in the mangrove shipworm Neoteredo reynei.
- Published in:
- PLoS ONE, 2018, v. 13, n. 11, p. 1, doi. 10.1371/journal.pone.0200437
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- Publication type:
- Article
Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions.
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- BMC Genomics, 2014, v. 15, n. 1, p. 654, doi. 10.1186/1471-2164-15-654
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- Publication type:
- Article
Finding functional associations between prokaryotic virus orthologous groups: a proof of concept.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04343-w
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- Publication type:
- Article
The Organellar Genome and Metabolic Potential of the Hydrogen-Producing Mitochondrion of Nyctotherus ovalis.
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- Molecular Biology & Evolution, 2011, v. 28, n. 8, p. 2379, doi. 10.1093/molbev/msr059
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- Publication type:
- Article
Signature Genes as a Phylogenomic Tool.
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- Molecular Biology & Evolution, 2008, v. 25, n. 8, p. 1659, doi. 10.1093/molbev/msn115
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- Article
Correction to: Changes to virus taxonomy and the ICTV Statutes ratifed by the International Committee on Taxonomy of Viruses (2023)
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- 2023
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- Publication type:
- Correction Notice
Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2023)
- Published in:
- Archives of Virology, 2023, v. 168, n. 7, p. 1, doi. 10.1007/s00705-023-05797-4
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- Article
Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee.
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- Archives of Virology, 2023, v. 168, n. 2, p. 1, doi. 10.1007/s00705-022-05694-2
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- Article
Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022).
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- Archives of Virology, 2022, v. 167, n. 11, p. 2429, doi. 10.1007/s00705-022-05516-5
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- Article
Differentiating between viruses and virus species by writing their names correctly.
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- Archives of Virology, 2022, v. 167, n. 4, p. 1231, doi. 10.1007/s00705-021-05323-4
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- Article
Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021.
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- Archives of Virology, 2021, v. 166, n. 11, p. 3239, doi. 10.1007/s00705-021-05205-9
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- Article
Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021).
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- Archives of Virology, 2021, v. 166, n. 9, p. 2633, doi. 10.1007/s00705-021-05156-1
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- Publication type:
- Article
Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020).
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- Archives of Virology, 2020, v. 165, n. 11, p. 2737, doi. 10.1007/s00705-020-04752-x
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- Publication type:
- Article
Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.
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- Archives of Virology, 2020, v. 165, n. 5, p. 1253, doi. 10.1007/s00705-020-04577-8
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- Publication type:
- Article
Correction to: Binomial nomenclature for virus species: a consultation.
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- 2020
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- Publication type:
- Correction Notice
Binomial nomenclature for virus species: a consultation.
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- Archives of Virology, 2020, v. 165, n. 2, p. 519, doi. 10.1007/s00705-019-04477-6
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- Publication type:
- Article
Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019).
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- Archives of Virology, 2019, v. 164, n. 9, p. 2417, doi. 10.1007/s00705-019-04306-w
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- Publication type:
- Article
Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).
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- Archives of Virology, 2019, v. 164, n. 3, p. 943, doi. 10.1007/s00705-018-04136-2
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- Publication type:
- Article
Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).
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- Archives of Virology, 2018, v. 163, n. 9, p. 2601, doi. 10.1007/s00705-018-3847-1
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- Publication type:
- Article
Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.
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- Archives of Virology, 2018, v. 163, n. 4, p. 1125, doi. 10.1007/s00705-018-3723-z
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- Publication type:
- Article
Deciphering the evolution and metabolism of an anammox bacterium from a community genome.
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- 2006
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- Publication type:
- Letter
Establishing normal metabolism and differentiation in hepatocellular carcinoma cells by culturing in adult human serum.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29763-2
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- Publication type:
- Article
Microbial Metabolism Shifts Towards an Adverse Profile with Supplementary Iron in the TIM-2 In vitro Model of the Human Colon.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2015.01481
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- Article
Beyond research: a primer for considerations on using viral metagenomics in the field and clinic.
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- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.00224
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- Publication type:
- Article
Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans.
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- Nature Communications, 2017, v. 8, n. 7, p. 15955, doi. 10.1038/ncomms15955
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- Article
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system.
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- Nature Communications, 2016, v. 7, n. 3, p. 11172, doi. 10.1038/ncomms11172
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- Article
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes.
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- Nature Communications, 2014, v. 5, n. 7, p. 4498, doi. 10.1038/ncomms5498
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- Article
Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT.
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- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1817-x
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- Article
The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus.
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- BMC Genomics, 2009, v. 10, p. 514, doi. 10.1186/1471-2164-10-514
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- Publication type:
- Article
Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment.
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- BMC Genomics, 2006, v. 7, p. 22, doi. 10.1186/1471-2164-7-22
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- Publication type:
- Article
A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation.
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- BMC Genomics, 2006, v. 7, p. 10, doi. 10.1186/1471-2164-7-10
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- Publication type:
- Article
Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0758-y
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- Publication type:
- Article
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria.
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- Nature, 2010, v. 464, n. 7288, p. 543, doi. 10.1038/nature08883
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- Article
Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.62719
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- Article
Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.
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- Systematic Biology, 2020, v. 69, n. 1, p. 110, doi. 10.1093/sysbio/syz036
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- Article
Ecogenomics and Taxonomy of Cyanobacteria Phylum.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02132
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- Article
Editorial: Virus Discovery by Metagenomics: The (Im)possibilities.
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- Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01710
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- Publication type:
- Article
Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses.
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- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00352
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- Publication type:
- Article
Ultrastructure and Viral Metagenome of Bacteriophages from an Anaerobic Methane Oxidizing Methylomirabilis Bioreactor Enrichment Culture.
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- Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01740
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- Article
Editorial: Computational Methods for Microbiome Analysis.
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- 2020
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- Publication type:
- Editorial
Genome-wide association studies of Shigella spp. and Enteroinvasive Escherichia coli isolates demonstrate an absence of genetic markers for prediction of disease severity.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6555-7
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- Article
The Consistent Phylogenetic Signal in Genome Trees Revealed by Reducing the Impact of Noise.
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- Journal of Molecular Evolution, 2004, v. 58, n. 5, p. 527, doi. 10.1007/s00239-003-2575-6
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- Article
OGRE: Overlap Graph-based metagenomic Read clustEring.
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- Bioinformatics, 2021, v. 37, n. 7, p. 905, doi. 10.1093/bioinformatics/btaa760
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- Publication type:
- Article
Using the structure of genome data in the design of deep neural networks for predicting amyotrophic lateral sclerosis from genotype.
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- Bioinformatics, 2019, v. 35, n. 14, p. i538, doi. 10.1093/bioinformatics/btz369
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- Publication type:
- Article
Optimized bacterial DNA isolation method for microbiome analysis of human tissues.
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- MicrobiologyOpen, 2021, v. 10, n. 3, p. 1, doi. 10.1002/mbo3.1191
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- Article
The bacterial sulfur cycle in expanding dysoxic and euxinic marine waters.
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- Environmental Microbiology, 2021, v. 23, n. 6, p. 2834, doi. 10.1111/1462-2920.15265
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- Article
Metagenomic and metaproteomic analyses of Accumulibacter phosphatis-enriched floccular and granular biofilm.
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- Environmental Microbiology, 2016, v. 18, n. 1, p. 273, doi. 10.1111/1462-2920.13019
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- Publication type:
- Article
Ultra-deep pyrosequencing of pmoA amplicons confirms the prevalence of Methylomonas and Methylocystis in Sphagnum mosses from a Dutch peat bog.
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- Environmental Microbiology Reports, 2011, v. 3, n. 6, p. 667, doi. 10.1111/j.1758-2229.2011.00260.x
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- Article
Cell Wall Modifications during Conidial Maturation of the Human Pathogenic Fungus <i>Pseudallescheria boydii</i>.
- Published in:
- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0100290
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- Article
Identification of a Novel Human Papillomavirus by Metagenomic Analysis of Samples from Patients with Febrile Respiratory Illness.
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- PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058404
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- Article