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Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis.
Published in:
Plant Biotechnology Journal, 2015, v. 13, n. 4, p. 460, doi. 10.1111/pbi.12254
By:
- Weyman, Philip D.;
- Beeri, Karen;
- Lefebvre, Stephane C.;
- Rivera, Josefa;
- McCarthy, James K.;
- Heuberger, Adam L.;
- Peers, Graham;
- Allen, Andrew E.;
- Dupont, Christopher L.
Publication type:
Article
The diversity of CO<sub>2</sub>-concentrating mechanisms in marine diatoms as inferred from their genetic content.
Published in:
Journal of Experimental Botany, 2017, v. 68, n. 14, p. 3937, doi. 10.1093/jxb/erx163
By:
- Chen Shen;
- Dupont, Christopher L.;
- Hopkinson, Brian M.
Publication type:
Article
Tracking the rise of eukaryotes to ecological dominance with zinc isotopes.
Published in:
Geobiology, 2018, v. 16, n. 4, p. 341, doi. 10.1111/gbi.12289
By:
- Isson, Terry T.;
- Love, Gordon D.;
- Dupont, Christopher L.;
- Reinhard, Christopher T.;
- Zumberge, Alex J.;
- Asael, Dan;
- Gueguen, Bleuenn;
- McCrow, John;
- Gill, Ben C.;
- Owens, Jeremy;
- Rainbird, Robert H.;
- Rooney, Alan D.;
- Zhao, Ming‐Yu;
- Stueeken, Eva E.;
- Konhauser, Kurt O.;
- John, Seth G.;
- Lyons, Timothy W.;
- Planavsky, Noah J.
Publication type:
Article
Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 20, p. 10375, doi. 10.1093/nar/gks823
By:
- Tagwerker, Christian;
- Dupont, Christopher L.;
- Karas, Bogumil J.;
- Ma, Li;
- Chuang, Ray-Yuan;
- Benders, Gwynedd A.;
- Ramon, Adi;
- Novotny, Mark;
- Montague, Michael G.;
- Venepally, Pratap;
- Brami, Daniel;
- Schwartz, Ariel;
- Andrews-Pfannkoch, Cynthia;
- Gibson, Daniel G.;
- Glass, John I.;
- Smith, Hamilton O.;
- Venter, J. Craig;
- Hutchison, Clyde A.
Publication type:
Article
Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.
Published in:
Nature Biotechnology, 2011, v. 29, n. 10, p. 915, doi. 10.1038/nbt.1966
By:
- Chitsaz, Hamidreza;
- Yee-Greenbaum, Joyclyn L;
- Tesler, Glenn;
- Lombardo, Mary-Jane;
- Dupont, Christopher L;
- Badger, Jonathan H;
- Novotny, Mark;
- Rusch, Douglas B;
- Fraser, Louise J;
- Gormley, Niall A;
- Schulz-Trieglaff, Ole;
- Smith, Geoffrey P;
- Evers, Dirk J;
- Pevzner, Pavel A;
- Lasken, Roger S
Publication type:
Article
Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 9, p. 1892, doi. 10.1038/ismej.2014.35
By:
- Larsson, John;
- Celepli, Narin;
- Ininbergs, Karolina;
- Dupont, Christopher L;
- Yooseph, Shibu;
- Bergman, Bigitta;
- Ekman, Martin
Publication type:
Article
Distribution of mercury‐cycling genes in the Arctic and equatorial Pacific Oceans and their relationship to mercury speciation.
Published in:
Limnology & Oceanography, 2020, v. 65, p. S310, doi. 10.1002/lno.11310
By:
- Bowman, Katlin L.;
- Collins, R. Eric;
- Agather, Alison M.;
- Lamborg, Carl H.;
- Hammerschmidt, Chad R.;
- Kaul, Drishti;
- Dupont, Christopher L.;
- Christensen, Geoff A.;
- Elias, Dwayne A.
Publication type:
Article
Pluses and minuses of ammonium and nitrate uptake and assimilation by phytoplankton and implications for productivity and community composition, with emphasis on nitrogen-enriched conditions.
Published in:
Limnology & Oceanography, 2016, v. 61, n. 1, p. 165, doi. 10.1002/lno.10203
By:
- Glibert, Patricia M.;
- Wilkerson, Frances P.;
- Dugdale, Richard C.;
- Raven, John A.;
- Dupont, Christopher L.;
- Leavitt, Peter R.;
- Parker, Alexander E.;
- Burkholder, JoAnn M.;
- Kana, Todd M.
Publication type:
Article
Effects of copper, cadmium, and zinc on the production and exudation of thiols by Emiliania huxleyi.
Published in:
Limnology & Oceanography, 2005, v. 50, n. 2, p. 508, doi. 10.4319/lo.2005.50.2.0508
By:
- Dupont, Christopher L.;
- Ahner, Beth A.
Publication type:
Article
Novel copper-binding and nitrogen-rich thiols produced and exuded by Emiliania huxleyi.
Published in:
Limnology & Oceanography, 2004, v. 49, n. 5, p. 1754, doi. 10.4319/lo.2004.49.5.1754
By:
- Dupont, Christopher L.;
- Nelson, Robert K.;
- Bashir, Saj;
- Moffett, James W.;
- Ahner, Beth A.
Publication type:
Article
Diurnal cycling of glutathione in marine phytoplankton: Field and culture studies.
Published in:
Limnology & Oceanography, 2004, v. 49, n. 4, p. 991, doi. 10.4319/lo.2004.49.4.0991
By:
- Dupont, Christopher L.;
- Goepfert, Tyler J.;
- Lo, Peter;
- Liping Wei;
- Ahner, Beth A.
Publication type:
Article
Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea.
Published in:
Molecular Biology & Evolution, 2019, v. 36, n. 3, p. 435, doi. 10.1093/molbev/msy234
By:
- Jaffe, Alexander L;
- Castelle, Cindy J;
- Dupont, Christopher L;
- Banfield, Jillian F
Publication type:
Article
Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont.
Published in:
Molecular Biology & Evolution, 2018, v. 35, n. 5, p. 1160, doi. 10.1093/molbev/msy029
By:
- Warshan, Denis;
- Liaimer, Anton;
- Pederson, Eric;
- Kim, Sea-Yong;
- Shapiro, Nicole;
- Woyke, Tanja;
- Altermark, Bjørn;
- Pawlowski, Katharina;
- Weyman, Philip D;
- Dupont, Christopher L
Publication type:
Article
Evolution and metabolic significance of the urea cycle in photosynthetic diatoms.
Published in:
Nature, 2011, v. 473, n. 7346, p. 203, doi. 10.1038/nature10074
By:
- Allen, Andrew E.;
- Dupont, Christopher L.;
- Oborník, Miroslav;
- Horák, Aleš;
- Nunes-Nesi, Adriano;
- McCrow, John P.;
- Hong Zheng;
- Johnson, Daniel A.;
- Hanhua Hu;
- Fernie, Alisdair R.;
- Bowler, Chris
Publication type:
Article
Genomic and functional adaptation in surface ocean planktonic prokaryotes.
Published in:
Nature, 2010, v. 468, n. 7320, p. 60, doi. 10.1038/nature09530
By:
- Yooseph, Shibu;
- Nealson, Kenneth H.;
- Rusch, Douglas B.;
- McCrow, John P.;
- Dupont, Christopher L.;
- Kim, Maria;
- Johnson, Justin;
- Montgomery, Robert;
- Ferriera, Steve;
- Beeson, Karen;
- Williamson, Shannon J.;
- Tovchigrechko, Andrey;
- Allen, Andrew E.;
- Zeigler, Lisa A.;
- Sutton, Granger;
- Eisenstadt, Eric;
- Rogers, Yu-Hui;
- Friedman, Robert;
- Frazier, Marvin;
- Venter, J. Craig
Publication type:
Article
Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom.
Published in:
Plant Cell, 2017, v. 29, n. 8, p. 2047, doi. 10.1105/tpc.16.00910
By:
- McCarthy, James K.;
- Smith, Sarah R.;
- McCrow, John P.;
- Tan, Maxine;
- Zheng, Hong;
- Beeri, Karen;
- Roth, Robyn;
- Lichtle, Christian;
- Goodenough, Ursula;
- Bowler, Chris P.;
- Dupont, Christopher L.;
- Allen, Andrew E.
Publication type:
Article
Assembly of eukaryotic algal chromosomes in yeast.
Published in:
Journal of Biological Engineering, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1754-1611-7-30
By:
- Karas, Bogumil J.;
- Molparia, Bhuvan;
- Jablanovic, Jelena;
- Hermann, Wolfgang J.;
- Ying-Chi Lin;
- Dupont, Christopher L.;
- Tagwerker, Christian;
- Yonemoto, Isaac T.;
- Noskov, Vladimir N.;
- Ray-Yuan Chuang;
- Allen, Andrew E.;
- Glass, John I.;
- Hutchison III, Clyde A.;
- Smith, Hamilton O.;
- Venter, J. Craig;
- Weyman, Philip D.
Publication type:
Article
Patterns of thaumarchaeal gene expression in culture and diverse marine environments.
Published in:
Environmental Microbiology, 2018, v. 20, n. 6, p. 2112, doi. 10.1111/1462-2920.14107
By:
- Carini, Paul;
- Dupont, Christopher L.;
- Santoro, Alyson E.
Publication type:
Article
Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters.
Published in:
Environmental Microbiology, 2016, v. 18, n. 12, p. 4442, doi. 10.1111/1462-2920.13407
By:
- Brindefalk, Björn;
- Ekman, Martin;
- Ininbergs, Karolina;
- Dupont, Christopher L.;
- Yooseph, Shibu;
- Pinhassi, Jarone;
- Bergman, Birgitta
Publication type:
Article
Designer diatom episomes delivered by bacterial conjugation.
Published in:
Nature Communications, 2015, v. 6, n. 4, p. 6925, doi. 10.1038/ncomms7925
By:
- Karas, Bogumil J.;
- Diner, Rachel E.;
- Lefebvre, Stephane C.;
- McQuaid, Jeff;
- Phillips, Alex P.R.;
- Noddings, Chari M.;
- Brunson, John K.;
- Valas, Ruben E.;
- Deerinck, Thomas J.;
- Jablanovic, Jelena;
- Gillard, Jeroen T.F.;
- Beeri, Karen;
- Ellisman, Mark H.;
- Glass, John I.;
- Hutchison III, Clyde A.;
- Smith, Hamilton O.;
- Venter, J. Craig;
- Allen, Andrew E.;
- Dupont, Christopher L.;
- Weyman, Philip D.
Publication type:
Article
Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia.
Published in:
PLoS ONE, 2024, v. 19, n. 7, p. 1, doi. 10.1371/journal.pone.0304060
By:
- Chekesa, Basha;
- Singh, Harinder;
- Gonzalez-Juarbe, Norberto;
- Vashee, Sanjay;
- Wiscovitch-Russo, Rosana;
- Dupont, Christopher L.;
- Girma, Musse;
- Kerro, Oudessa;
- Gumi, Balako;
- Ameni, Gobena
Publication type:
Article
Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution.
Published in:
PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155757
By:
- Díez, Beatriz;
- Nylander, Johan A. A.;
- Ininbergs, Karolina;
- Dupont, Christopher L.;
- Allen, Andrew E.;
- Yooseph, Shibu;
- Rusch, Douglas B.;
- Bergman, Birgitta
Publication type:
Article
Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom.
Published in:
PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155038
By:
- Levering, Jennifer;
- Broddrick, Jared;
- Dupont, Christopher L.;
- Peers, Graham;
- Beeri, Karen;
- Mayers, Joshua;
- Gallina, Alessandra A.;
- Allen, Andrew E.;
- Palsson, Bernhard O.;
- Zengler, Karsten
Publication type:
Article
Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers' diarrhea.
Published in:
Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0579-0
By:
- Zhu, Qiyun;
- Dupont, Christopher L.;
- Jones, Marcus B.;
- Pham, Kevin M.;
- Jiang, Zhi-Dong;
- DuPont, Herbert L.;
- Highlander, Sarah K.
Publication type:
Article
Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04409-z
By:
- Michaud, Jennifer M.;
- Thompson, Luke R.;
- Kaul, Drishti;
- Espinoza, Josh L.;
- Richter, R. Alexander;
- Zhenjiang Zech Xu;
- Lee, Christopher;
- Pham, Kevin M.;
- Beall, Charlotte M.;
- Malfatti, Francesca;
- Azam, Farooq;
- Knight, Rob;
- Burkart, Michael D.;
- Dupont, Christopher L.;
- Prather, Kimberly A.
Publication type:
Article
Molecular epidemiology of Staphylococcus aureus in African children from rural and urban communities with atopic dermatitis.
Published in:
2021
By:
- Ndhlovu, Gillian O. N.;
- Abotsi, Regina E.;
- Shittu, Adebayo O.;
- Abdulgader, Shima M.;
- Jamrozy, Dorota;
- Dupont, Christopher L.;
- Mankahla, Avumile;
- Nicol, Mark P.;
- Hlela, Carol;
- Levin, Michael E.;
- Lunjani, Nonhlanhla;
- Dube, Felix S.
Publication type:
journal article
Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season.
Published in:
New Phytologist, 2013, v. 198, n. 2, p. 398, doi. 10.1111/nph.12160
By:
- Konotchick, Talina;
- Dupont, Christopher L.;
- Valas, Ruben E.;
- Badger, Jonathan H.;
- Allen, Andrew E.
Publication type:
Article
Simultaneous quantum yield measurements of carbon uptake and oxygen evolution in microalgal cultures.
Published in:
PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0199125
By:
- Du, Niu;
- Gholami, Pardis;
- Kline, David I.;
- DuPont, Christopher L.;
- Dickson, Andrew G.;
- Mendola, Dominick;
- Martz, Todd;
- Allen, Andrew E.;
- Mitchell, B. Greg
Publication type:
Article
Plastics select for distinct early colonizing microbial populations with reproducible traits across environmental gradients.
Published in:
Environmental Microbiology, 2023, v. 25, n. 12, p. 2761, doi. 10.1111/1462-2920.16391
By:
- Bos, Ryan P.;
- Kaul, Drishti;
- Zettler, Erik R.;
- Hoffman, Jeffrey M.;
- Dupont, Christopher L.;
- Amaral‐Zettler, Linda A.;
- Mincer, Tracy J.
Publication type:
Article

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