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P3‐265: DEVELOPMENT OF AN INDICATOR CELL ASSAY FOR BLOOD‐BASED DIAGNOSIS OF ALZHEIMER'S DISEASE.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2019, v. 15, p. P1038, doi. 10.1016/j.jalz.2019.06.3296
By:
- Whitney, George Adam;
- Miller, Leslie R.;
- Berndt, Jason D.;
- Duffy, Fergal J.;
- Fowler, Christopher;
- Masters, Colin L.;
- Fagan, Anne M.;
- Li, Ge;
- Peskind, Elaine R.;
- Aitchison, John D.;
- Lipshutz, Robert J.;
- Smith, Jennifer Joy
Publication type:
Article
Early whole blood transcriptional responses to radiation-attenuated Plasmodium falciparum sporozoite vaccination in malaria naïve and malaria pre-exposed adult volunteers.
Published in:
Malaria Journal, 2021, v. 20, n. 1, p. 1, doi. 10.1186/s12936-021-03839-3
By:
- Duffy, Fergal J.;
- Du, Ying;
- Carnes, Jason;
- Epstein, Judith E.;
- Hoffman, Stephen L.;
- Abdulla, Salim;
- Jongo, Said;
- Mpina, Maxmillian;
- Daubenberger, Claudia;
- Aitchison, John D.;
- Stuart, Ken
Publication type:
Article
A Serum Circulating miRNA Signature for Short-Term Risk of Progression to Active Tuberculosis Among Household Contacts.
Published in:
Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.00661
By:
- Duffy, Fergal J.;
- Thompson, Ethan;
- Downing, Katrina;
- Suliman, Sara;
- Mayanja-Kizza, Harriet;
- Boom, W. Henry;
- Thiel, Bonnie;
- Weiner III, January;
- Kaufmann, Stefan H. E.;
- Dover, Drew;
- Tabb, David L.;
- Dockrell, Hazel M.;
- Ottenhoff, Tom H. M.;
- Tromp, Gerard;
- Scriba, Thomas J.;
- Zak, Daniel E.;
- Walzl, Gerhard;
- Kaufmann, S. H. E.;
- Parida, S. K.;
- Golinski, R.
Publication type:
Article
Four-Gene Pan-African Blood Signature Predicts Progression to Tuberculosis.
Published in:
2018
By:
- Suliman, Sara;
- Thompson, Ethan G.;
- Sutherland, Jayne;
- Weiner 3rd, January;
- Ota, Martin O. C.;
- Shankar, Smitha;
- Penn-Nicholson, Adam;
- Thiel, Bonnie;
- Erasmus, Mzwandile;
- Maertzdorf, Jeroen;
- Duffy, Fergal J.;
- Hill, Philip C.;
- Hughes, E. Jane;
- Stanley, Kim;
- Downing, Katrina;
- Fisher, Michelle L.;
- Valvo, Joe;
- Parida, Shreemanta K.;
- van der Spuy, Gian;
- Tromp, Gerard
Publication type:
journal article
Systems analysis of immune responses to attenuated P. falciparum malaria sporozoite vaccination reveals excessive inflammatory signatures correlating with impaired immunity.
Published in:
PLoS Pathogens, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.ppat.1010282
By:
- Du, Ying;
- Hertoghs, Nina;
- Duffy, Fergal J.;
- Carnes, Jason;
- McDermott, Suzanne M.;
- Neal, Maxwell L.;
- Schwedhelm, Katharine V.;
- McElrath, M. Juliana;
- De Rosa, Stephen C.;
- Aitchison, John D.;
- Stuart, Kenneth D.
Publication type:
Article
Immunometabolic Signatures Predict Risk of Progression to Active Tuberculosis and Disease Outcome.
Published in:
Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00527
By:
- Duffy, Fergal J.;
- Weiner III, January;
- Hansen, Scott;
- Tabb, David L.;
- Suliman, Sara;
- Thompson, Ethan;
- Maertzdorf, Jeroen;
- Shankar, Smitha;
- Tromp, Gerard;
- Parida, Shreemanta;
- Dover, Drew;
- Axthelm, Michael K.;
- Sutherland, Jayne S.;
- Dockrell, Hazel M.;
- Ottenhoff, Tom H. M.;
- Scriba, Thomas J.;
- Picker, Louis J.;
- Walzl, Gerhard;
- Kaufmann, Stefan H. E.;
- Zak, Daniel E.
Publication type:
Article
Metabolite changes in blood predict the onset of tuberculosis.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07635-7
By:
- Weiner, January;
- Maertzdorf, Jeroen;
- Sutherland, Jayne S.;
- Duffy, Fergal J.;
- Thompson, Ethan;
- Suliman, Sara;
- McEwen, Gayle;
- Thiel, Bonnie;
- Parida, Shreemanta K.;
- Zyla, Joanna;
- Hanekom, Willem A.;
- Mohney, Robert P.;
- Boom, W. Henry;
- Mayanja-Kizza, Harriet;
- Howe, Rawleigh;
- Dockrell, Hazel M.;
- Ottenhoff, Tom H. M.;
- Scriba, Thomas J.;
- Zak, Daniel E.;
- Walzl, Gerhard
Publication type:
Article
Computational survey of peptides derived from disulphide-bonded protein loops that may serve as mediators of protein-protein interactions.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-305
By:
- Duffy, Fergal J.;
- Devocelle, Marc;
- Croucher, David R.;
- Shields, Denis C.
Publication type:
Article
The Peripheral Blood Transcriptome Is Correlated With PET Measures of Lung Inflammation During Successful Tuberculosis Treatment.
Published in:
Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.596173
By:
- Odia, Trust;
- Malherbe, Stephanus T.;
- Meier, Stuart;
- Maasdorp, Elizna;
- Kleynhans, Léanie;
- du Plessis, Nelita;
- Loxton, Andre G.;
- Zak, Daniel E.;
- Thompson, Ethan;
- Duffy, Fergal J.;
- Kuivaniemi, Helena;
- Ronacher, Katharina;
- Winter, Jill;
- Walzl, Gerhard;
- Tromp, Gerard;
- Loxton, André G.;
- Ellman, Annare;
- Smith, Bronwyn;
- Beltran, Caroline G. G.;
- Barry III, Clifton E.
Publication type:
Article
Preimmunization correlates of protection shared across malaria vaccine trials in adults.
Published in:
NPJ Vaccines, 2022, v. 7, n. 1, p. 1, doi. 10.1038/s41541-021-00425-1
By:
- Neal, Maxwell L.;
- Duffy, Fergal J.;
- Du, Ying;
- Aitchison, John D.;
- Stuart, Kenneth D.
Publication type:
Article
Neutrophil degranulation, NETosis and platelet degranulation pathway genes are co-induced in whole blood up to six months before tuberculosis diagnosis.
Published in:
PLoS ONE, 2022, v. 17, n. 12, p. 1, doi. 10.1371/journal.pone.0278295
By:
- Meier, Stuart;
- Seddon, James A.;
- Maasdorp, Elizna;
- Kleynhans, Léanie;
- du Plessis, Nelita;
- Loxton, Andre G.;
- Malherbe, Stephanus T.;
- Zak, Daniel E.;
- Thompson, Ethan;
- Duffy, Fergal J.;
- Kaufmann, Stefan H. E.;
- Ottenhoff, Tom H. M.;
- Scriba, Thomas J.;
- Suliman, Sara;
- Sutherland, Jayne S.;
- Winter, Jill;
- Kuivaniemi, Helena;
- Walzl, Gerhard;
- Tromp, Gerard
Publication type:
Article
Multinomial modelling of TB/HIV co-infection yields a robust predictive signature and generates hypotheses about the HIV+TB+ disease state.
Published in:
PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0219322
By:
- Duffy, Fergal J.;
- Thompson, Ethan G.;
- Scriba, Thomas J.;
- Zak, Daniel E.
Publication type:
Article
Use of a Contained Mycobacterium tuberculosis Mouse Infection Model to Predict Active Disease and Containment in Humans.
Published in:
2022
By:
- Duffy, Fergal J;
- Olson, Gregory S;
- Gold, Elizabeth S;
- Jahn, Ana;
- Aderem, Alan;
- Aitchison, John D;
- Rothchild, Alissa C;
- Diercks, Alan H;
- Nemeth, Johannes
Publication type:
journal article
Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection.
Published in:
PLoS Pathogens, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.ppat.1008655
By:
- Nemeth, Johannes;
- Olson, Gregory S.;
- Rothchild, Alissa C.;
- Jahn, Ana N.;
- Mai, Dat;
- Duffy, Fergal J.;
- Delahaye, Jared L.;
- Srivatsan, Sanjay;
- Plumlee, Courtney R.;
- Urdahl, Kevin B.;
- Gold, Elizabeth S.;
- Aderem, Alan;
- Diercks, Alan H.
Publication type:
Article
Structural bioinformatics: GlycoProfileAssigner: automated structural assignment with error estimation for glycan LC data.
Published in:
Bioinformatics, 2015, v. 31, n. 13, p. 2220, doi. 10.1093/bioinformatics/btv129
By:
- Duffy, Fergal J.;
- Rudd, Pauline M.
Publication type:
Article
Detection of Tuberculosis Recurrence, Diagnosis and Treatment Response by a Blood Transcriptomic Risk Signature in HIV-Infected Persons on Antiretroviral Therapy.
Published in:
Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.01441
By:
- Darboe, Fatoumatta;
- Mbandi, Stanley Kimbung;
- Naidoo, Kogieleum;
- Yende-Zuma, Nonhlanhla;
- Lewis, Lara;
- Thompson, Ethan G.;
- Duffy, Fergal J.;
- Fisher, Michelle;
- Filander, Elizabeth;
- van Rooyen, Michele;
- Bilek, Nicole;
- Mabwe, Simbarashe;
- McKinnon, Lyle R.;
- Chegou, Novel;
- Loxton, Andre;
- Walzl, Gerhard;
- Tromp, Gerard;
- Padayatchi, Nesri;
- Govender, Dhineshree;
- Hatherill, Mark
Publication type:
Article
Distinct immune responses associated with vaccination status and protection outcomes after malaria challenge.
Published in:
PLoS Pathogens, 2023, v. 18, n. 5, p. 1, doi. 10.1371/journal.ppat.1011051
By:
- Oyong, Damian A.;
- Duffy, Fergal J.;
- Neal, Maxwell L.;
- Du, Ying;
- Carnes, Jason;
- Schwedhelm, Katharine V.;
- Hertoghs, Nina;
- Jun, Seong-Hwan;
- Miller, Helen;
- Aitchison, John D.;
- De Rosa, Stephen C.;
- Newell, Evan W.;
- McElrath, M Juliana;
- McDermott, Suzanne M.;
- Stuart, Kenneth D.
Publication type:
Article

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