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Rice SNP-seek database update: new SNPs, indels, and queries.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D1075, doi. 10.1093/nar/gkw1135
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- Article
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D26, doi. 10.1093/nar/gkt1069
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- Article
MycoCosm portal: gearing up for 1000 fungal genomes.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D699, doi. 10.1093/nar/gkt1183
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- Article
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics.
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- Nucleic Acids Research, 2012, v. 40, p. W604, doi. 10.1093/nar/gks562
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- Article
The Genome Portal of the Department of Energy Joint Genome Institute.
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- Nucleic Acids Research, 2012, p. D26, doi. 10.1093/nar/gkr947
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- Article
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach.
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- Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W299, doi. 10.1093/nar/gkq531
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- Article
MicrobesOnline: an integrated portal for comparative and functional genomics.
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- Nucleic Acids Research, 2010, v. 38, p. D396, doi. 10.1093/nar/gkp919
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- Article
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes.
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- Nucleic Acids Research, 2010, v. 38, p. D111, doi. 10.1093/nar/gkp894
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- Article
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes.
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- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D448, doi. 10.1093/nar/gkn684
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- Article
IMG/M: a data management and analysis system for metagenomes.
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- Nucleic Acids Research, 2008, v. 36, p. D534
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- Article
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.
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- Nucleic Acids Research, 2008, v. 36, p. D528
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- Article
A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing.
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- Nucleic Acids Research, 2007, v. 35, n. 14, p. 4845, doi. 10.1093/nar/gkm485
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- Article
Multiple whole genome alignments and novel biomedical applications at the VISTA portal.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W669, doi. 10.1093/nar/gkm279
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- Article
RegTransBase—a database of regulatory sequences and interactions in a wide range of prokaryotic genomes.
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- Nucleic Acids Research, 2007, v. 35, p. d407, doi. 10.1093/nar/gkl865
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- Article
VISTA Enhancer Browser—a database of tissue-specific human enhancers.
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- Nucleic Acids Research, 2007, v. 35, p. d88, doi. 10.1093/nar/gkl822
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- Article
Visualizing genomes: techniques and challenges.
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- Nature Methods, 2010, v. 7, n. 3s, p. S5, doi. 10.1038/nmeth.1422
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- Article
The computational challenges of applying computational methods to whole genomes.
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- Briefings in Bioinformatics, 2002, v. 3, n. 1, p. 18, doi. 10.1093/bib/3.1.18
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- Article
An Integrative Computational Approach for Prioritization of Genomic Variants.
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- PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0114903
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Recognition of a protein fold in the context of the SCOP classification.
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- Proteins, 1999, v. 35, n. 4, p. 401, doi. 10.1002/(SICI)1097-0134(19990601)35:4<401::AID-PROT3>3.0.CO;2-K
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- Article
Variation in conserved non-coding sequences on chromosome 5q and susceptibility to asthma and atopy.
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- Respiratory Research, 2005, v. 6, p. 145, doi. 10.1186/1465-9921-6-145
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- Article
Elviz - exploration of metagenome assemblies with an interactive visualization tool.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0566-4
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- Article
SNP-VISTA: An interactive SNP visualization tool.
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- BMC Bioinformatics, 2005, v. 6, p. 292, doi. 10.1186/1471-2105-6-292
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- Article
The Sorghum bicolor genome and the diversification of grasses.
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- Nature, 2009, v. 457, n. 7229, p. 551, doi. 10.1038/nature07723
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- Article
The amphioxus genome and the evolution of the chordate karyotype.
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- Nature, 2008, v. 453, n. 7198, p. 1064, doi. 10.1038/nature06967
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- Article
In vivo enhancer analysis of human conserved non-coding sequences.
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- Nature, 2006, v. 444, n. 7118, p. 499, doi. 10.1038/nature05295
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The integrated microbial genomes (IMG) system.
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- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d344, doi. 10.1093/nar/gkj024
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- Article
The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons.
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- Nucleic Acids Research, 2005, v. 33, n. 2, p. 714, doi. 10.1093/nar/gki210
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- Article
VISTA: computational tools for comparative genomics.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w273, doi. 10.1093/nar/gkh458
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- Article
A computational approach to identify genes for functional RNAs in genomic sequences.
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- Nucleic Acids Research, 2001, v. 29, n. 19, p. 3928, doi. 10.1093/nar/29.19.3928
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- Article
Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing.
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- Nucleic Acids Research, 2001, v. 29, n. 11, p. 2338, doi. 10.1093/nar/29.11.2338
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- Article
Prediction of protein folding class from amino acid composition.
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- Proteins, 1993, v. 16, n. 1, p. 79, doi. 10.1002/prot.340160109
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- Article
Dissimilatory Metabolism of Nitrogen Oxides in Bacteria: Comparative Reconstruction of Transcriptional Networks.
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- PLoS Computational Biology, 2005, v. 1, n. 5, p. 415, doi. 10.1371/journal.pcbi.0010055
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- Article
SNPs in putative regulatory regions identified by human mouse comparative sequencing and transcription factor binding site data.
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- Mammalian Genome, 2002, v. 13, n. 10, p. 554, doi. 10.1007/s00335-002-2169-4
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- Article
The genome of Eucalyptus grandis.
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- Nature, 2014, v. 510, n. 7505, p. 356, doi. 10.1038/nature13308
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TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.
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- Bioinformatics, 2007, v. 23, n. 6, p. 764
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- Article
Phylo-VISTA: interactive visualization of multiple DNA sequence alignments.
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- Bioinformatics, 2004, v. 20, n. 5, p. 636, doi. 10.1093/bioinformatics/btg459
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- Article
Multi-class protein fold recognition using support vector machines and neural networks.
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- Bioinformatics, 2001, v. 17, n. 4, p. 349, doi. 10.1093/bioinformatics/17.4.349
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- Article
VISTA : visualizing global DNA sequence alignments of arbitrary length.
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- Bioinformatics, 2000, v. 16, n. 11, p. 1046, doi. 10.1093/bioinformatics/16.11.1046
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- Article
σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2176-y
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- Article
σ<sup>54</sup>-dependent regulome in Desulfovibrio vulgaris Hildenborough.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2176-y
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- Article
Functionally conserved enhancers with divergent sequences in distant vertebrates.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2070-7
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- Article
RegPrecise 3.0 -- A resource for genome-scale exploration of transcriptional regulation in bacteria.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-745
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- Article
RegTransBase - a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-213
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- Article
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.
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- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-S1-S3
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- Article
GenomeVISTA—an integrated software package for whole-genome alignment and visualization.
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- Bioinformatics, 2014, v. 30, n. 18, p. 2654, doi. 10.1093/bioinformatics/btu355
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- Article
Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.
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- Bioinformatics, 2013, v. 29, n. 16, p. 2059, doi. 10.1093/bioinformatics/btt318
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- Article
VISTA Region Viewer (RViewer)—a computational system for prioritizing genomic intervals for biomedical studies.
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- Bioinformatics, 2011, v. 27, n. 18, p. 2595, doi. 10.1093/bioinformatics/btr440
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- Article