Works by Dosztányi, Zsuzsanna

Results: 40

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d275

By:

Tusnády, Gábor E.;
Dosztányi, Zsuzsanna;
Simon, István

Publication type:

Article

Servers for sequence–structure relationship analysis and prediction.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3359, doi. 10.1093/nar/gkg589

By:

Dosztányi, Zsuzsanna;
Magyar, Csaba;
Tusnády, Gábor E.;
Cserző, Miklós;
Fiser, András;
Simon, István

Publication type:

Article

Tutorial: a guide for the selection of fast and accurate computational tools for the prediction of intrinsic disorder in proteins.

Published in:

Nature Protocols, 2023, v. 18, n. 11, p. 3157, doi. 10.1038/s41596-023-00876-x

By:

Kurgan, Lukasz;
Hu, Gang;
Wang, Kui;
Ghadermarzi, Sina;
Zhao, Bi;
Malhis, Nawar;
Erdős, Gábor;
Gsponer, Jörg;
Uversky, Vladimir N.;
Dosztányi, Zsuzsanna

Publication type:

Article

DisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins.

Published in:

Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 1, p. 1, doi. 10.1002/pro.4522

By:

Deutsch, Norbert;
Pajkos, Mátyás;
Erdős, Gábor;
Dosztányi, Zsuzsanna

Publication type:

Article

Prediction of protein disorder based on IUPred.

Published in:

Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 331, doi. 10.1002/pro.3334

By:

Dosztányi, Zsuzsanna

Publication type:

Article

Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on MAP kinases.

Published in:

Molecular Systems Biology, 2015, v. 11, n. 11, p. n/a, doi. 10.15252/msb.20156269

By:

Zeke, András;
Bastys, Tomas;
Alexa, Anita;
Garai, Ágnes;
Mészáros, Bálint;
Kirsch, Klára;
Dosztányi, Zsuzsanna;
Kalinina, Olga V;
Reményi, Attila

Publication type:

Article

Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005885

By:

Erdős, Gábor;
Szaniszló, Tamás;
Pajkos, Mátyás;
Hajdu-Soltész, Borbála;
Kiss, Bence;
Pál, Gábor;
Nyitray, László;
Dosztányi, Zsuzsanna

Publication type:

Article

Bioinformatical approaches to characterize intrinsically disordered/unstructured proteins.

Published in:

Briefings in Bioinformatics, 2010, v. 11, n. 2, p. 225, doi. 10.1093/bib/bbp061

By:

Dosztányi, Zsuzsanna;
Mészáros, Bálint;
Simon, István

Publication type:

Article

Acetylation of nuclear receptors in health and disease: an update.

Published in:

FEBS Journal, 2024, v. 291, n. 2, p. 217, doi. 10.1111/febs.16695

By:

Ashton, Anthony W.;
Dhanjal, Harpreet K.;
Rossner, Benjamin;
Mahmood, Huma;
Patel, Vivek I.;
Nadim, Mohammad;
Lota, Manpreet;
Shahid, Farhan;
Li, Zhiping;
Joyce, David;
Pajkos, Matyas;
Dosztányi, Zsuzsanna;
Jiao, Xuanmao;
Pestell, Richard G.

Publication type:

Article

Proteins with Complex Architecture as Potential Targets for Drug Design: A Case Study of Mycobacterium tuberculosis.

Published in:

2011

By:

Mészáros, Bálint;
Tóth, Judit;
Vértessy, Beáta G.;
Dosztányi, Zsuzsanna;
Simon, István

Publication type:

Case Study

Prediction of Protein Binding Regions in Disordered Proteins.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000376

By:

Mészáros, Bálint;
Simon, István;
Dosztányi, Zsuzsanna

Publication type:

Article

Large‐Scale Analysis of Redox‐Sensitive Conditionally Disordered Protein Regions Reveals Their Widespread Nature and Key Roles in High‐Level Eukaryotic Processes.

Published in:

Proteomics, 2019, v. 19, n. 6, p. N.PAG, doi. 10.1002/pmic.201800070

By:

Erdős, Gábor;
Mészáros, Bálint;
Reichmann, Dana;
Dosztányi, Zsuzsanna

Publication type:

Article

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.

Published in:

Bioinformatics, 2005, v. 21, n. 16, p. 3433, doi. 10.1093/bioinformatics/bti541

By:

Zsuzsanna Dosztányi

Publication type:

Article

Transmembrane proteins in the Protein Data Bank: identification and classification.

Published in:

Bioinformatics, 2004, v. 20, n. 17, p. 2964, doi. 10.1093/bioinformatics/bth340

By:

Gábor E. Tusnády;
Zsuzsanna Dosztányi;
István Simon

Publication type:

Article

Amino acid similarity matrices based on force fields.

Published in:

Bioinformatics, 2001, v. 17, n. 8, p. 686, doi. 10.1093/bioinformatics/17.8.686

By:

Dosztányi, Zsuzsanna;
Torda, Andrew E.

Publication type:

Article

ViralPrimer: a web server to monitor viral nucleic acid amplification tests' primer efficiency during pandemics, with emphasis on SARS-CoV-2 and Mpox.

Published in:

Bioinformatics, 2024, v. 40, n. 11, p. 1, doi. 10.1093/bioinformatics/btae657

By:

Deutsch, Norbert;
Dosztányi, Zsuzsanna;
Csabai, István;
Medgyes-Horváth, Anna;
Pipek, Orsolya Anna;
Stéger, József;
Papp, Krisztián;
Visontai, Dávid;
Erdős, Gábor;
Mentes, Anikó

Publication type:

Article

MobiDB-lite 3.0: fast consensus annotation of intrinsic disorder flavors in proteins.

Published in:

Bioinformatics, 2020, v. 36, n. 22/23, p. 5533, doi. 10.1093/bioinformatics/btaa1045

By:

Necci, Marco;
Piovesan, Damiano;
Clementel, Damiano;
Dosztányi, Zsuzsanna;
Tosatto, Silvio C E

Publication type:

Article

DIBS: a repository of disordered binding sites mediating interactions with ordered proteins.

Published in:

Bioinformatics, 2018, v. 34, n. 3, p. 535, doi. 10.1093/bioinformatics/btx640

By:

Schad, Eva;
Fichó, Erzsébet;
Pancsa, Rita;
Simon, István;
Dosztányi, Zsuzsanna;
Mészáros, Bálint

Publication type:

Article

A comprehensive assessment of long intrinsic protein disorder from the DisProt database.

Published in:

Bioinformatics, 2018, v. 34, n. 3, p. 445, doi. 10.1093/bioinformatics/btx590

By:

Necci, Marco;
Piovesan, Damiano;
Dosztányi, Zsuzsanna;
Tompa, Peter;
Tosatto, Silvio C E

Publication type:

Article

MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins.

Published in:

Bioinformatics, 2017, v. 33, n. 9, p. 1402, doi. 10.1093/bioinformatics/btx015

By:

Necci, Marco;
Piovesan, Damiano;
Dosztányi, Zsuzsanna;
Tosatto, Silvio C. E.

Publication type:

Article

IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W297, doi. 10.1093/nar/gkab408

By:

Erdős, Gábor;
Pajkos, Mátyás;
Dosztányi, Zsuzsanna

Publication type:

Article

The MemMoRF database for recognizing disordered protein regions interacting with cellular membranes.

Published in:

Nucleic Acids Research, 2021, v. 49, n. D1, p. D355, doi. 10.1093/nar/gkaa954

By:

Csizmadia, Georgina;
Erdős, Gábor;
Tordai, Hedvig;
Padányi, Rita;
Tosatto, Silvio;
Dosztányi, Zsuzsanna;
Hegedűs, Tamás

Publication type:

Article

MobiDB: intrinsically disordered proteins in 2021.

Published in:

Nucleic Acids Research, 2021, v. 49, n. D1, p. D361, doi. 10.1093/nar/gkaa1058

By:

Piovesan, Damiano;
Necci, Marco;
Escobedo, Nahuel;
Monzon, Alexander Miguel;
Hatos, András;
Mičetić, Ivan;
Quaglia, Federica;
Paladin, Lisanna;
Ramasamy, Pathmanaban;
Dosztányi, Zsuzsanna;
Vranken, Wim F;
Davey, Norman E;
Parisi, Gustavo;
Fuxreiter, Monika;
Tosatto, Silvio C E

Publication type:

Article

PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins.

Published in:

Nucleic Acids Research, 2020, v. 48, n. W1, p. W77, doi. 10.1093/nar/gkaa339

By:

Jarnot, Patryk;
Ziemska-Legiecka, Joanna;
Dobson, Laszlo;
Merski, Matthew;
Mier, Pablo;
Andrade-Navarro, Miguel A;
Hancock, John M;
Dosztányi, Zsuzsanna;
Paladin, Lisanna;
Necci, Marco;
Piovesan, Damiano;
Tosatto, Silvio C E;
Promponas, Vasilis J;
Grynberg, Marcin;
Gruca, Aleksandra

Publication type:

Article

PhaSePro: the database of proteins driving liquid–liquid phase separation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. D1, p. D360, doi. 10.1093/nar/gkz848

By:

Mészáros, Bálint;
Erdős, Gábor;
Szabó, Beáta;
Schád, Éva;
Tantos, Ágnes;
Abukhairan, Rawan;
Horváth, Tamás;
Murvai, Nikoletta;
Kovács, Orsolya P;
Kovács, Márton;
Tosatto, Silvio C E;
Tompa, Péter;
Dosztányi, Zsuzsanna;
Pancsa, Rita

Publication type:

Article

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding.

Published in:

Nucleic Acids Research, 2018, v. 46, n. W1, p. W329, doi. 10.1093/nar/gky384

By:

Mészáros, Bálint;
Erdős, Gábor;
Dosztányi, Zsuzsanna

Publication type:

Article

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D471, doi. 10.1093/nar/gkx1071

By:

Piovesan, Damiano;
Tabaro, Francesco;
Paladin, Lisanna;
Necci, Marco;
Mičetić, Ivan;
Camilloni, Carlo;
Davey, Norman;
Dosztányi, Zsuzsanna;
Mészáros, Bálint;
Monzon, Alexander M

Publication type:

Article

InterPro in 2017--beyond protein family and domain annotations.

Published in:

Nucleic Acids Research, 2017, v. 45, n. D1, p. D190, doi. 10.1093/nar/gkw1107

By:

Finn, Robert D.;
Attwood, Teresa K.;
Babbitt, Patricia C.;
Bateman, Alex;
Bork, Peer;
Bridge, Alan J.;
Hsin-Yu Chang;
Dosztányi, Zsuzsanna;
El-Gebali, Sara;
Fraser, Matthew;
Gough, Julian;
Haft, David;
Holliday, Gemma L.;
Hongzhan Huang;
Xiaosong Huang;
Letunic, Ivica;
Lopez, Rodrigo;
Lu, Shennan;
Marchler-Bauer, Aron;
Huaiyu Mi

Publication type:

Article

D<sup>2</sup>P<sup>2</sup>: database of disordered protein predictions.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D508, doi. 10.1093/nar/gks1226

By:

Oates, Matt E.;
Romero, Pedro;
Takashi Ishida;
Ghalwash, Mohamed;
Mizianty, Marcin J.;
Bin Xue;
Dosztányi, Zsuzsanna;
Uversky, Vladimir N.;
Obradovic, Zoran;
Kurgan, Lukasz;
Dunker, A. Keith;
Gough, Julian

Publication type:

Article

Degrons in cancer.

Published in:

Science Signaling, 2017, v. 10, n. 470, p. 1, doi. 10.1126/scisignal.aak9982

By:

Mészáros, Bálint;
Kumar, Manjeet;
Gibson, Toby J.;
Uyar, Bora;
Dosztányi, Zsuzsanna

Publication type:

Article

The N-Terminal Intrinsically Disordered Domain of Mgm101p Is Localized to the Mitochondrial Nucleoid.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056465

By:

Hayward, David C.;
Dosztányi, Zsuzsanna;
Clark-Walker, George Desmond

Publication type:

Article

Disordered Binding Regions and Linear Motifs--Bridging the Gap between Two Models of Molecular Recognition.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0046829

By:

Mészáros, Bálint;
Dosztányi, Zsuzsanna;
Simon, István

Publication type:

Article

Systematic analysis of somatic mutations driving cancer: uncovering functional protein regions in disease development.

Published in:

Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0125-6

By:

Mészáros, Bálint;
Zeke, András;
Reményi, Attila;
Simon, István;
Dosztányi, Zsuzsanna

Publication type:

Article

The interaction between LC8 and LCA5 reveals a novel oligomerization function of LC8 in the ciliary-centrosome system.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19454-4

By:

Szaniszló, Tamás;
Fülöp, Máté;
Pajkos, Mátyás;
Erdős, Gábor;
Kovács, Réka Ágnes;
Vadászi, Henrietta;
Kardos, József;
Dosztányi, Zsuzsanna

Publication type:

Article

AIUPred: combining energy estimation with deep learning for the enhanced prediction of protein disorder.

Published in:

Nucleic Acids Research, 2024, v. 52, n. W1, p. W176, doi. 10.1093/nar/gkae385

By:

Erdős, Gábor;
Dosztányi, Zsuzsanna

Publication type:

Article

The Origin of Discrepancies between Predictions and Annotations in Intrinsically Disordered Proteins.

Published in:

Biomolecules (2218-273X), 2023, v. 13, n. 10, p. 1442, doi. 10.3390/biom13101442

By:

Pajkos, Mátyás;
Erdős, Gábor;
Dosztányi, Zsuzsanna

Publication type:

Article

Functional Tuning of Intrinsically Disordered Regions in Human Proteins by Composition Bias.

Published in:

Biomolecules (2218-273X), 2022, v. 12, n. 10, p. N.PAG, doi. 10.3390/biom12101486

By:

Kastano, Kristina;
Mier, Pablo;
Dosztányi, Zsuzsanna;
Promponas, Vasilis J.;
Andrade-Navarro, Miguel A.

Publication type:

Article

Mutations of Intrinsically Disordered Protein Regions Can Drive Cancer but Lack Therapeutic Strategies.

Published in:

Biomolecules (2218-273X), 2021, v. 11, n. 3, p. 381, doi. 10.3390/biom11030381

By:

Mészáros, Bálint;
Hajdu-Soltész, Borbála;
Zeke, András;
Dosztányi, Zsuzsanna;
Kulkarni, Prakash

Publication type:

Article

Evolutionary Study of Disorder in Protein Sequences.

Published in:

Biomolecules (2218-273X), 2020, v. 10, n. 10, p. 1413, doi. 10.3390/biom10101413

By:

Kastano, Kristina;
Erdős, Gábor;
Mier, Pablo;
Alanis-Lobato, Gregorio;
Promponas, Vasilis J.;
Dosztányi, Zsuzsanna;
Andrade-Navarro, Miguel A.

Publication type:

Article

Ancient Evolutionary Origin of Intrinsically Disordered Cancer Risk Regions.

Published in:

Biomolecules (2218-273X), 2020, v. 10, n. 8, p. 1115, doi. 10.3390/biom10081115

By:

Pajkos, Mátyás;
Zeke, András;
Dosztányi, Zsuzsanna

Publication type:

Article