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Differentially Expressed miRNAs in Ulcerative Colitis and Crohn's Disease.
Published in:
Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.865777
By:
- Yarani, Reza;
- Shojaeian, Ali;
- Palasca, Oana;
- Doncheva, Nadezhda T.;
- Jensen, Lars Juhl;
- Gorodkin, Jan;
- Pociot, Flemming
Publication type:
Article
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D607, doi. 10.1093/nar/gky1131
By:
- Szklarczyk, Damian;
- Gable, Annika L;
- Lyon, David;
- Junge, Alexander;
- Wyder, Stefan;
- Huerta-Cepas, Jaime;
- Simonovic, Milan;
- Doncheva, Nadezhda T;
- Morris, John H;
- Bork, Peer;
- Jensen, Lars J;
- Mering, Christian von
Publication type:
Article
The STRING database in 2017: quality-controlled protein--protein association networks, made broadly accessible.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D362, doi. 10.1093/nar/gkw937
By:
- Szklarczyk, Damian;
- Morris, John H.;
- Cook, Helen;
- Kuhn, Michael;
- Wyder, Stefan;
- Simonovic, Milan;
- Santos, Alberto;
- Doncheva, Nadezhda T.;
- Roth, Alexander;
- Bork, Peer;
- Jensen, Lars J.;
- von Mering, Christian
Publication type:
Article
Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.
Published in:
Nature Genetics, 2013, v. 45, n. 6, p. 670, doi. 10.1038/ng.2616
By:
- Liu, Jimmy Z;
- Hov, Johannes Roksund;
- Folseraas, Trine;
- Ellinghaus, Eva;
- Rushbrook, Simon M;
- Doncheva, Nadezhda T;
- Andreassen, Ole A;
- Weersma, Rinse K;
- Weismüller, Tobias J;
- Eksteen, Bertus;
- Invernizzi, Pietro;
- Hirschfield, Gideon M;
- Gotthardt, Daniel Nils;
- Pares, Albert;
- Ellinghaus, David;
- Shah, Tejas;
- Juran, Brian D;
- Milkiewicz, Piotr;
- Rust, Christian;
- Schramm, Christoph
Publication type:
Article
The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.909493
By:
- Geissler, Adrian S.;
- Poulsen, Line D.;
- Doncheva, Nadezhda T.;
- Anthon, Christian;
- Seemann, Stefan E.;
- González-Tortuero, Enrique;
- Breüner, Anne;
- Jensen, Lars J.;
- Hjort, Carsten;
- Vinther, Jeppe;
- Gorodkin, Jan
Publication type:
Article
Correction: Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms.
Published in:
PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0128048
By:
- Andreassen, Ole A.;
- Desikan, Rahul S.;
- Wang, Yunpeng;
- Thompson, Wesley K.;
- Schork, Andrew J.;
- Zuber, Verena;
- Doncheva, Nadezhda T.;
- Ellinghaus, Eva;
- Albrecht, Mario;
- Mattingsdal, Morten;
- Franke, Andre;
- Lie, Benedicte A.;
- Mills, Ian G.;
- Aukrust, Pål;
- McEvoy, Linda K.;
- Djurovic, Srdjan;
- Karlsen, Tom H.;
- Dale, Anders M.
Publication type:
Article
Abundant Genetic Overlap between Blood Lipids and Immune-Mediated Diseases Indicates Shared Molecular Genetic Mechanisms.
Published in:
PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123057
By:
- Andreassen, Ole A.;
- Desikan, Rahul S.;
- Wang, Yunpeng;
- Thompson, Wesley K.;
- Schork, Andrew J.;
- Zuber, Verena;
- Doncheva, Nadezhda T.;
- Ellinghaus, Eva;
- Albrecht, Mario;
- Mattingsdal, Morten;
- Franke, Andre;
- Lie, Benedicte A.;
- Mills, Ian;
- Aukrust, Pål;
- McEvoy, Linda K.;
- Djurovic, Srdjan;
- Karlsen, Tom H.;
- Dale, Anders M.
Publication type:
Article
Profiling of Parkin-Binding Partners Using Tandem Affinity Purification.
Published in:
PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078648
By:
- Zanon, Alessandra;
- Rakovic, Aleksandar;
- Blankenburg, Hagen;
- Doncheva, Nadezhda T.;
- Schwienbacher, Christine;
- Serafin, Alice;
- Alexa, Adrian;
- Weichenberger, Christian X.;
- Albrecht, Mario;
- Klein, Christine;
- Hicks, Andrew A.;
- Pramstaller, Peter P.;
- Domingues, Francisco S.;
- Pichler, Irene
Publication type:
Article
Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors.
Published in:
Retrovirology, 2020, v. 17, n. 1, p. 1, doi. 10.1186/s12977-020-00520-6
By:
- Bastys, Tomas;
- Gapsys, Vytautas;
- Walter, Hauke;
- Heger, Eva;
- Doncheva, Nadezhda T.;
- Kaiser, Rolf;
- de Groot, Bert L.;
- Kalinina, Olga V.
Publication type:
Article
Golgi fragmentation--One of the earliest organelle phenotypes in Alzheimer's disease neurons.
Published in:
Frontiers in Neuroscience, 2023, v. 17, p. 1, doi. 10.3389/fnins.2023.1120086
By:
- Haukedal, Henriette;
- Corsi, Giulia I.;
- Gadekar, Veerendra P.;
- Doncheva, Nadezhda T.;
- Kedia, Shekhar;
- de Haan, Noortje;
- Chandrasekaran, Abinaya;
- Jensen, Pia;
- Schiønning, Pernille;
- Vallin, Sarah;
- Marlet, Frederik Ravnkilde;
- Poon, Anna;
- Pires, Carlota;
- Agha, Fawzi Khoder;
- Wandall, Hans H.;
- Cirera, Susanna;
- Simonsen, Anja Hviid;
- Nielsen, Troels Tolstrup;
- Nielsen, Jørgen Erik;
- Hyttel, Poul
Publication type:
Article
STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest.
Published in:
Nucleic Acids Research, 2023, v. 51, n. D1, p. D638, doi. 10.1093/nar/gkac1000
By:
- Szklarczyk, Damian;
- Kirsch, Rebecca;
- Koutrouli, Mikaela;
- Nastou, Katerina;
- Mehryary, Farrokh;
- Hachilif, Radja;
- Gable, Annika L;
- Fang, Tao;
- Doncheva, Nadezhda T;
- Pyysalo, Sampo;
- Bork, Peer;
- Jensen, Lars J;
- von Mering, Christian
Publication type:
Article
Correction to 'The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets'.
Published in:
2021
By:
- Szklarczyk, Damian;
- Gable, Annika L;
- Nastou, Katerina C;
- Lyon, David;
- Kirsch, Rebecca;
- Pyysalo, Sampo;
- Doncheva, Nadezhda T;
- Legeay, Marc;
- Fang, Tao;
- Bork, Peer;
- Jensen, Lars J;
- von Mering, Christian
Publication type:
Correction Notice
Human pathways in animal models: possibilities and limitations.
Published in:
Nucleic Acids Research, 2021, v. 49, n. 4, p. 1859, doi. 10.1093/nar/gkab012
By:
- Doncheva, Nadezhda T;
- Palasca, Oana;
- Yarani, Reza;
- Litman, Thomas;
- Anthon, Christian;
- Groenen, Martien A M;
- Stadler, Peter F;
- Pociot, Flemming;
- Jensen, Lars J;
- Gorodkin, Jan
Publication type:
Article
The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets.
Published in:
Nucleic Acids Research, 2021, v. 49, n. D1, p. D605, doi. 10.1093/nar/gkaa1074
By:
- Szklarczyk, Damian;
- Gable, Annika L;
- Nastou, Katerina C;
- Lyon, David;
- Kirsch, Rebecca;
- Pyysalo, Sampo;
- Doncheva, Nadezhda T;
- Legeay, Marc;
- Fang, Tao;
- Bork, Peer;
- Jensen, Lars J;
- von Mering, Christian
Publication type:
Article
Integrative visual analysis of protein sequence mutations.
Published in:
BMC Proceedings, 2014, p. 1, doi. 10.1186/1753-6561-8-S2-S2
By:
- Doncheva, Nadezhda T.;
- Klein, Karsten;
- Morris, John H.;
- Wybrow, Michael;
- Domingues, Francisco S.;
- Albrecht, Mario
Publication type:
Article
Streamlined analysis of drug targets by proteome integral solubility alteration indicates organ-specific engagement.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53240-2
By:
- Batth, Tanveer Singh;
- Locard-Paulet, Marie;
- Doncheva, Nadezhda T.;
- Lopez Mendez, Blanca;
- Jensen, Lars Juhl;
- Olsen, Jesper Velgaard
Publication type:
Article
Streamlined analysis of drug targets by proteome integral solubility alteration indicates organ-specific engagement.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53240-2
By:
- Batth, Tanveer Singh;
- Locard-Paulet, Marie;
- Doncheva, Nadezhda T.;
- Lopez Mendez, Blanca;
- Jensen, Lars Juhl;
- Olsen, Jesper Velgaard
Publication type:
Article
NetworkPrioritizer: a versatile tool for network-based prioritization of candidate disease genes or other molecules.
Published in:
Bioinformatics, 2013, v. 29, n. 11, p. 1471, doi. 10.1093/bioinformatics/btt164
By:
- Kacprowski, Tim;
- Doncheva, Nadezhda T.;
- Albrecht, Mario
Publication type:
Article

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