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Disseminated Mycoplasma Orale Infection in Patients With Phosphoinositide-3-Kinase Regulatory Subunit 1 Mutations.
Published in:
Open Forum Infectious Diseases, 2022, v. 9, n. 9, p. 1, doi. 10.1093/ofid/ofac472
By:
- Totten, Arthur H;
- Uzel, Gulbu;
- Khil, Pavel P;
- Youn, Jung-Ho;
- Treat, Jennifer;
- Soutar, Craig D;
- Holland, Steven M;
- Dekker, John P;
- Zerbe, Christa S
Publication type:
Article
Trimethoprim-Sulfamethoxazole Versus Levofloxacin for Stenotrophomonas maltophilia Infections: A Retrospective Comparative Effectiveness Study of Electronic Health Records from 154 US Hospitals.
Published in:
Open Forum Infectious Diseases, 2022, v. 9, n. 2, p. 1, doi. 10.1093/ofid/ofab644
By:
- Sarzynski, Sadia H;
- Warner, Sarah;
- Sun, Junfeng;
- Matsouaka, Roland;
- Dekker, John P;
- Babiker, Ahmed;
- Li, Willy;
- Lai, Yi Ling;
- Danner, Robert L;
- Fowler, Vance G;
- Kadri, Sameer S
Publication type:
Article
473. Impact of Adjunctive Clindamycin in Invasive β-Hemolytic Streptococcal Infections: A Propensity Score-matched Analysis of 1956 β-lactam Treated Patients from 118 US Hospitals.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, p. S231, doi. 10.1093/ofid/ofz360.546
By:
- Babiker, Ahmed;
- Hussain, Sadia;
- Lai, Yi Ling;
- Strich, Jeffrey R;
- Warner, Sarah;
- Li, Xioabai;
- Danner, Robert L;
- Dekker, John P;
- Kadri, Sameer S
Publication type:
Article
232. Genomic Evidence for Dissemination of Mycobacterium marinum in an HIV Patient with Multifocal Cutaneous Disease.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, p. S133, doi. 10.1093/ofid/ofz360.307
By:
- Chiang, Augusto Dulanto;
- Khil, Pavel P;
- Manion, Maura;
- Sereti, Irini;
- Zelazny, Adrian;
- Dekker, John P
Publication type:
Article
2311. Bacteremia Is Not Commonly Detected in Ebola Virus Disease.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, p. S792, doi. 10.1093/ofid/ofz360.1989
By:
- Matson, Matthew J;
- Massaquoi, Moses;
- Sprecher, Armand;
- Giuliani, Ruggero;
- Edwards, Jeffrey K;
- Dekker, John P;
- Ricotta, Emily;
- Feldmann, Friederike;
- Feldmann, Heinz;
- Munster, Vincent J;
- Chertow, Daniel S
Publication type:
Article
2297. Epidemiology of Antibiotic-resistant Pathogens and Empiric Treatment Patterns in Community-Onset Sepsis.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, p. S787, doi. 10.1093/ofid/ofz360.1975
By:
- Rhee, Chanu;
- Kadri, Sameer S;
- Dekker, John P;
- Danner, Robert L;
- Chen, Huai-Chun;
- Fram, David;
- Klompas, Michael
Publication type:
Article
External Validation of Difficult-to-Treat Resistance Prevalence and Mortality Risk in Gram-Negative Bloodstream Infection Using Electronic Health Record Data From 140 US Hospitals.
Published in:
Open Forum Infectious Diseases, 2019, v. 6, n. 4, p. N.PAG, doi. 10.1093/ofid/ofz110
By:
- Kadri, Sameer S;
- Lai, Yi Ling (Elaine);
- Ricotta, Emily E;
- Strich, Jeffrey R;
- Babiker, Ahmed;
- Rhee, Chanu;
- Klompas, Michael;
- Dekker, John P;
- Powers, John H;
- Danner, Robert L;
- Adjemian, Jennifer
Publication type:
Article
Protective Immunization against Inhalational Anthrax: A Comparison of Minimally Invasive Delivery Platforms.
Published in:
Journal of Infectious Diseases, 2005, v. 191, n. 2, p. 278, doi. 10.1086/426865
By:
- Mikszta, John A.;
- Sullivan, Vincent J.;
- Dean, Cheryl;
- Waterston, Andrea M.;
- Alarcon, Jason B.;
- Dekker III, John P.;
- Brittingham, John M.;
- Huang, Juan;
- Hwang, C. Robin;
- Ferriter, Matthew;
- Jiang, Ge;
- Mar, Kevin;
- Saikh, Kamal U.;
- Stiles, Bradley G.;
- Roy, Chad J.;
- Ulrich, Robert G.;
- Harvey, Noel G.
Publication type:
Article
Association Between Caseload Surge and COVID-19 Survival in 558 U.S. Hospitals, March to August 2020.
Published in:
2021
By:
- Kadri, Sameer S.;
- Sun, Junfeng;
- Lawandi, Alexander;
- Strich, Jeffrey R.;
- Busch, Lindsay M.;
- Keller, Michael;
- Babiker, Ahmed;
- Yek, Christina;
- Malik, Seidu;
- Krack, Janell;
- Dekker, John P.;
- Spaulding, Alicen B.;
- Ricotta, Emily;
- Powers III, John H.;
- Rhee, Chanu;
- Klompas, Michael;
- Athale, Janhavi;
- Boehmer, Tegan K.;
- Gundlapalli, Adi V.;
- Bentley, William
Publication type:
journal article
Genomic insights into the host specific adaptation of the Pneumocystis genus.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-01799-7
By:
- Cissé, Ousmane H.;
- Ma, Liang;
- Dekker, John P.;
- Khil, Pavel P.;
- Youn, Jung-Ho;
- Brenchley, Jason M.;
- Blair, Robert;
- Pahar, Bapi;
- Chabé, Magali;
- Van Rompay, Koen K. A.;
- Keesler, Rebekah;
- Sukura, Antti;
- Hirsch, Vanessa;
- Kutty, Geetha;
- Liu, Yueqin;
- Peng, Li;
- Chen, Jie;
- Song, Jun;
- Weissenbacher-Lang, Christiane;
- Xu, Jie
Publication type:
Article
A Genoproteomic Approach to Detect Peptide Markers of Bacterial Respiratory Pathogens.
Published in:
Clinical Chemistry, 2017, v. 63, n. 8, p. 1398, doi. 10.1373/clinchem.2016.269647
By:
- Honghui Wang;
- Drake, Steven K.;
- Chen Yong;
- Gucek, Marjan;
- Lyes, Matthew A.;
- Rosenberg, Avi Z.;
- Soderblom, Erik;
- Moseley, M. Arthur;
- Dekker, John P.;
- Suffredini, Anthony F.
Publication type:
Article
A Novel Peptidomic Approach to Strain Typing of Clinical Acinetobacter baumannii Isolates Using Mass Spectrometry.
Published in:
Clinical Chemistry, 2016, v. 62, n. 6, p. 866, doi. 10.1373/clinchem.2015.253468
By:
- Honghui Wang;
- Drake, Steven K.;
- Chen Yong;
- Gucek, Marjan;
- Tropea, Margaret;
- Rosenberg, Avi Z.;
- Dekker, John P.;
- Suffredini, Anthony F.
Publication type:
Article
Effect of pentachlorophenol on the activation of 2,6-dinitrotoluene to genotoxic urinary metabolites in CD-1 mice: A comparison of GI enzyme activities and urine mutagenicity.
Published in:
Environmental & Molecular Mutagenesis, 1991, v. 18, n. 2, p. 92, doi. 10.1002/em.2850180203
By:
- George, S. Elizabeth;
- Chadwick, Robert W.;
- Creason, John P.;
- Kohan, Michael J.;
- Dekker, John P.;
- O'Neill, J. P.
Publication type:
Article
Prevalence of Antibiotic-Resistant Pathogens in Culture-Proven Sepsis and Outcomes Associated With Inadequate and Broad-Spectrum Empiric Antibiotic Use.
Published in:
JAMA Network Open, 2020, p. e202899, doi. 10.1001/jamanetworkopen.2020.2899
By:
- Rhee, Chanu;
- Kadri, Sameer S.;
- Dekker, John P.;
- Danner, Robert L.;
- Chen, Huai-Chun;
- Fram, David;
- Zhang, Fang;
- Wang, Rui;
- Klompas, Michael
Publication type:
Article
Severe BCG-osis Misdiagnosed as Multidrug-Resistant Tuberculosis in an IL-12Rβ1-Deficient Peruvian Girl.
Published in:
Journal of Clinical Immunology, 2018, v. 38, n. 6, p. 712, doi. 10.1007/s10875-018-0535-6
By:
- Esteve-Sole, Ana;
- Sánchez-Dávila, Suly P.;
- Deyà-Martínez, Angela;
- Freeman, Alexandra F.;
- Zelazny, Adrian M.;
- Dekker, John P.;
- Khil, Pavel P.;
- Holland, Steven M.;
- Noguera-Julian, Antoni;
- Bustamante, Jacinta;
- Casanova, Jean-Laurent;
- Juan, Manel;
- Cordova, Wilmer;
- Alsina, Laia
Publication type:
Article
Pharmacoepidemiology of Ceftazidime-Avibactam Use: A Retrospective Cohort Analysis of 210 US Hospitals.
Published in:
Clinical Infectious Diseases, 2021, v. 72, n. 4, p. 611, doi. 10.1093/cid/ciaa061
By:
- Strich, Jeffrey R;
- Ricotta, Emily;
- Warner, Sarah;
- Lai, Yi Ling;
- Demirkale, Cumhur Y;
- Hohmann, Samuel F;
- Rhee, Chanu;
- Klompas, Michael;
- Palmore, Tara;
- Powers, John H;
- Dekker, John P;
- Adjemian, Jennifer;
- Matsouaka, Roland;
- Woods, Christopher W;
- Danner, Robert L;
- Kadri, Sameer S
Publication type:
Article
Difficult-to-Treat Resistance in Gram-negative Bacteremia at 173 US Hospitals: Retrospective Cohort Analysis of Prevalence, Predictors, and Outcome of Resistance to All First-line Agents.
Published in:
Clinical Infectious Diseases, 2018, v. 67, n. 12, p. 1803, doi. 10.1093/cid/ciy378
By:
- Kadri, Sameer S;
- Adjemian, Jennifer;
- Lai, Yi Ling;
- Spaulding, Alicen B;
- Ricotta, Emily;
- Prevots, D Rebecca;
- Palmore, Tara N;
- Rhee, Chanu;
- Klompas, Michael;
- Dekker, John P
Publication type:
Article
Hypermutator strains of Pseudomonas aeruginosa reveal novel pathways of resistance to combinations of cephalosporin antibiotics and beta-lactamase inhibitors.
Published in:
PLoS Biology, 2022, v. 20, n. 11, p. 1, doi. 10.1371/journal.pbio.3001878
By:
- Chiang, Augusto Dulanto;
- Patil, Prashant P.;
- Beka, Lidia;
- Youn, Jung-Ho;
- Launay, Adrien;
- Bonomo, Robert A.;
- Khil, Pavel P.;
- Dekker, John P.
Publication type:
Article
Intracellular gate opening in Shaker K<sup>+</sup> channels defined by high-affinity metal bridges.
Published in:
Nature, 2004, v. 428, n. 6985, p. 864, doi. 10.1038/nature02468
By:
- Webster, Sarah M.;
- del Camino, Donato;
- Dekker, John P.;
- Yellen, Gary
Publication type:
Article
Association between piperacillin/tazobactam MIC and survival among hospitalized patients with Enterobacterales infections: retrospective cohort analysis of electronic health records from 161 US hospitals.
Published in:
JAC-Antimicrobial Resistance, 2023, v. 5, n. 2, p. 1, doi. 10.1093/jacamr/dlad041
By:
- Strich, Jeffrey R.;
- Lawandi, Alexander;
- Warner, Sarah;
- Demirkale, Cumhur Y.;
- Sarzynski, Sadia;
- Babiker, Ahmed;
- Dekker, John P.;
- Kadri, Sameer S.
Publication type:
Article
Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae.
Published in:
Science Translational Medicine, 2014, v. 6, n. 254, p. 1, doi. 10.1126/scitranslmed.3009845
By:
- Conlan, Sean;
- Thomas, Pamela J.;
- Deming, Clayton;
- Park, Morgan;
- Lau, Anna F.;
- Dekker, John P.;
- Snitkin, Evan S.;
- Clark, Tyson A.;
- Khai Luong;
- Yi Song;
- Yu-Chih Tsai;
- Boitano, Matthew;
- Dayal, Jyoti;
- Brooks, Shelise Y.;
- Schmidt, Brian;
- Young, Alice C.;
- Thomas, James W.;
- Bouffard, Gerard G.;
- Blakesley, Robert W.;
- Mullikin, James C.
Publication type:
Article
A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments.
Published in:
Bioinformatics, 2004, v. 20, n. 10, p. 1565, doi. 10.1093/bioinformatics/bth128
By:
- John P. Dekker;
- Anthony Fodor
Publication type:
Article
Disseminated Mycobacterium marinum in Human Immunodeficiency Virus Unmasked by Immune Reconstitution Inflammatory Syndrome.
Published in:
2021
By:
- Manion, Maura;
- Chiang, Augusto Dulanto;
- Pei, Luxin;
- Wong, Chun-Shu;
- Khil, Pavel;
- Hammoud, Dima A;
- Anderson, Megan;
- Laidlaw, Elizabeth;
- Kuriakose, Safia;
- Lisco, Andrea;
- Program, NISC Comparative Sequencing;
- Zelazny, Adrian M;
- Dekker, John P;
- Sereti, Irini;
- Dulanto Chiang, Augusto;
- NISC Comparative Sequencing Program
Publication type:
journal article
From the Pipeline to the Bedside: Advances and Challenges in Clinical Metagenomics.
Published in:
2020
By:
- Chiang, Augusto Dulanto;
- Dekker, John P;
- Dulanto Chiang, Augusto
Publication type:
journal article
Compatibility of Maximum-Containment Virus–Inactivation Protocols With Identification of Bacterial Coinfections by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry.
Published in:
Journal of Infectious Diseases, 2018, v. 218, p. S297, doi. 10.1093/infdis/jiy292
By:
- Matson, M Jeremiah;
- Stock, Frida;
- Shupert, W Lesley;
- Bushmaker, Trenton;
- Feldmann, Friederike;
- Bishop, Wendy B;
- Frank, Karen M;
- Dekker, John P;
- Chertow, Daniel S;
- Munster, Vincent J
Publication type:
Article
Compatibility of Maximum-Containment Virus-Inactivation Protocols With Identification of Bacterial Coinfections by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry.
Published in:
2018
By:
- Matson, M Jeremiah;
- Stock, Frida;
- Shupert, W Lesley;
- Bushmaker, Trenton;
- Feldmann, Friederike;
- Bishop, Wendy B;
- Frank, Karen M;
- Dekker, John P;
- Chertow, Daniel S;
- Munster, Vincent J
Publication type:
journal article
Rapid detection of colistin resistance protein MCR-1 by LC–MS/MS.
Published in:
Clinical Proteomics, 2019, v. 16, n. 1, p. N.PAG, doi. 10.1186/s12014-019-9228-2
By:
- Wang, Honghui;
- Chen, Yong;
- Strich, Jeffrey R.;
- Drake, Steven K.;
- Youn, Jung-Ho;
- Rosenberg, Avi Z.;
- Gucek, Marjan;
- McGann, Patrick T.;
- Suffredini, Anthony F.;
- Dekker, John P.
Publication type:
Article

Found: 27