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Identification of recurrent FGFR3 fusion genes in lung cancer through kinome-centred RNA sequencing.
Published in:
Journal of Pathology, 2013, v. 230, n. 3, p. 270, doi. 10.1002/path.4209
By:
- Majewski, Ian J;
- Mittempergher, Lorenza;
- Davidson, Nadia M;
- Bosma, Astrid;
- Willems, Stefan M;
- Horlings, Hugo M;
- de Rink, Iris;
- Greger, Liliana;
- Hooijer, Gerrit KJ;
- Peters, Dennis;
- Nederlof, Petra M;
- Hofland, Ingrid;
- de Jong, Jeroen;
- Wesseling, Jelle;
- Kluin, Roelof JC;
- Brugman, Wim;
- Kerkhoven, Ron;
- Nieboer, Frank;
- Roepman, Paul;
- Broeks, Annegien
Publication type:
Article
Flexiplex: a versatile demultiplexer and search tool for omics data.
Published in:
Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae102
By:
- Cheng, Oliver;
- Ling, Min Hao;
- Wang, Changqing;
- Wu, Shuyi;
- Ritchie, Matthew E;
- Göke, Jonathan;
- Amin, Noorul;
- Davidson, Nadia M
Publication type:
Article
Clinker: visualizing fusion genes detected in RNA-seq data.
Published in:
GigaScience, 2018, v. 7, n. 7, p. N.PAG, doi. 10.1093/gigascience/giy079
By:
- Schmidt, Breon M;
- Davidson, Nadia M;
- Hawkins, Anthony D K;
- Bartolo, Ray;
- Majewski, Ian J;
- Ekert, Paul G;
- Oshlack, Alicia
Publication type:
Article
Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis.
Published in:
GigaScience, 2018, v. 7, n. 5, p. N.PAG, doi. 10.1093/gigascience/giy045
By:
- Davidson, Nadia M;
- Oshlack, Alicia
Publication type:
Article
Author Correction: Variants in SART3 cause a spliceosomopathy characterised by failure of testis development and neuronal defects.
Published in:
2023
By:
- Ayers, Katie L.;
- Eggers, Stefanie;
- Rollo, Ben N.;
- Smith, Katherine R.;
- Davidson, Nadia M.;
- Siddall, Nicole A.;
- Zhao, Liang;
- Bowles, Josephine;
- Weiss, Karin;
- Zanni, Ginevra;
- Burglen, Lydie;
- Ben-Shachar, Shay;
- Rosensaft, Jenny;
- Raas-Rothschild, Annick;
- Jørgensen, Anne;
- Schittenhelm, Ralf B.;
- Huang, Cheng;
- Robevska, Gorjana;
- van den Bergen, Jocelyn;
- Casagranda, Franca
Publication type:
Correction Notice
Variants in SART3 cause a spliceosomopathy characterised by failure of testis development and neuronal defects.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39040-0
By:
- Ayers, Katie L.;
- Eggers, Stefanie;
- Rollo, Ben N.;
- Smith, Katherine R.;
- Davidson, Nadia M.;
- Siddall, Nicole A.;
- Zhao, Liang;
- Bowles, Josephine;
- Weiss, Karin;
- Zanni, Ginevra;
- Burglen, Lydie;
- Ben-Shachar, Shay;
- Rosensaft, Jenny;
- Raas-Rothschild, Annick;
- Jørgensen, Anne;
- Schittenhelm, Ralf B.;
- Huang, Cheng;
- Robevska, Gorjana;
- van den Bergen, Jocelyn;
- Casagranda, Franca
Publication type:
Article
Variants in SART3 cause a spliceosomopathy characterised by failure of testis development and neuronal defects.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39040-0
By:
- Ayers, Katie L.;
- Eggers, Stefanie;
- Rollo, Ben N.;
- Smith, Katherine R.;
- Davidson, Nadia M.;
- Siddall, Nicole A.;
- Zhao, Liang;
- Bowles, Josephine;
- Weiss, Karin;
- Zanni, Ginevra;
- Burglen, Lydie;
- Ben-Shachar, Shay;
- Rosensaft, Jenny;
- Raas-Rothschild, Annick;
- Jørgensen, Anne;
- Schittenhelm, Ralf B.;
- Huang, Cheng;
- Robevska, Gorjana;
- van den Bergen, Jocelyn;
- Casagranda, Franca
Publication type:
Article
JAFFAL: detecting fusion genes with long-read transcriptome sequencing.
Published in:
Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02588-5
By:
- Davidson, Nadia M.;
- Chen, Ying;
- Sadras, Teresa;
- Ryland, Georgina L.;
- Blombery, Piers;
- Ekert, Paul G.;
- Göke, Jonathan;
- Oshlack, Alicia
Publication type:
Article
MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02507-8
By:
- Cmero, Marek;
- Schmidt, Breon;
- Majewski, Ian J.;
- Ekert, Paul G.;
- Oshlack, Alicia;
- Davidson, Nadia M.
Publication type:
Article
MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02507-8
By:
- Cmero, Marek;
- Schmidt, Breon;
- Majewski, Ian J.;
- Ekert, Paul G.;
- Oshlack, Alicia;
- Davidson, Nadia M.
Publication type:
Article
Correction: Novel CDKL5 targets identified in human iPSC-derived neurons.
Published in:
2024
By:
- Massey, Sean;
- Ang, Ching-Seng;
- Davidson, Nadia M.;
- Quigley, Anita;
- Rollo, Ben;
- Harris, Alexander R.;
- Kapsa, Robert M. I.;
- Christodoulou, John;
- Van Bergen, Nicole J.
Publication type:
Correction Notice
Novel CDKL5 targets identified in human iPSC-derived neurons.
Published in:
Cellular & Molecular Life Sciences, 2024, v. 81, n. 1, p. 1, doi. 10.1007/s00018-024-05389-8
By:
- Massey, Sean;
- Ang, Ching-Seng;
- Davidson, Nadia M.;
- Quigley, Anita;
- Rollo, Ben;
- Harris, Alexander R.;
- Kapsa, Robert M. I.;
- Christodoulou, John;
- Van Bergen, Nicole J.
Publication type:
Article
Novel CDKL5 targets identified in human iPSC-derived neurons.
Published in:
Cellular & Molecular Life Sciences, 2024, v. 81, n. 1, p. 1, doi. 10.1007/s00018-024-05389-8
By:
- Massey, Sean;
- Ang, Ching-Seng;
- Davidson, Nadia M.;
- Quigley, Anita;
- Rollo, Ben;
- Harris, Alexander R.;
- Kapsa, Robert M. I.;
- Christodoulou, John;
- J. Van Bergen, Nicole
Publication type:
Article
Co-option of the cardiac transcription factor Nkx2.5 during development of the emu wing.
Published in:
Nature Communications, 2017, v. 8, n. 7, p. 1, doi. 10.1038/s41467-017-00112-7
By:
- Farlie, Peter G.;
- Davidson, Nadia M.;
- Baker, Naomi L.;
- Raabus, Mai;
- Roeszler, Kelly N.;
- Hirst, Claire;
- Major, Andrew;
- Mariette, Mylene M.;
- Lambert, David M.;
- Oshlack, Alicia;
- Smith, Craig A.
Publication type:
Article
JAFFAL: detecting fusion genes with long-read transcriptome sequencing.
Published in:
Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02588-5
By:
- Davidson, Nadia M.;
- Chen, Ying;
- Sadras, Teresa;
- Ryland, Georgina L.;
- Blombery, Piers;
- Ekert, Paul G.;
- Göke, Jonathan;
- Oshlack, Alicia
Publication type:
Article
Corset: enabling differential gene expression analysis for de novo assembled transcriptomes.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0410-6
By:
- Davidson, Nadia M.;
- Oshlack, Alicia
Publication type:
Article
RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome.
Published in:
Genome Biology, 2013, v. 14, n. 3, p. 1, doi. 10.1186/gb-2013-14-3-r26
By:
- Ayers, Katie L.;
- Davidson, Nadia M.;
- Demiyah, Diana;
- Roeszler, Kelly N.;
- Grützner, Frank;
- Sinclair, Andrew H.;
- Oshlack, Alicia;
- Smith, Craig A.
Publication type:
Article
Targeted therapy and disease monitoring in CNTRL-FGFR1-driven leukaemia.
Published in:
2019
By:
- Brown, Lauren M.;
- Bartolo, Ray C.;
- Davidson, Nadia M.;
- Schmidt, Breon;
- Brooks, Ian;
- Challis, Jackie;
- Petrovic, Vida;
- Khuong‐Quang, Dong‐Anh;
- Mechinaud, Francoise;
- Khaw, Seong L.;
- Majewski, Ian J.;
- Oshlack, Alicia;
- Ekert, Paul G.;
- Khuong-Quang, Dong-Anh
Publication type:
journal article
SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes.
Published in:
Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1284-1
By:
- Davidson, Nadia M.;
- Hawkins, Anthony D. K.;
- Oshlack, Alicia
Publication type:
Article
JAFFA: High sensitivity transcriptome-focused fusion gene detection.
Published in:
Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0167-x
By:
- Davidson, Nadia M.;
- Majewski, Ian J.;
- Oshlack, Alicia
Publication type:
Article
Identification of candidate gonadal sex differentiation genes in the chicken embryo using RNA-seq.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1886-5
By:
- Ayers, Katie L.;
- Lambeth, Luke S.;
- Davidson, Nadia M.;
- Sinclair, Andrew H.;
- Oshlack, Alicia;
- Smith, Craig A.
Publication type:
Article
Limb patterning genes and heterochronic development of the emu wing bud.
Published in:
EvoDevo, 2016, v. 7, p. 1, doi. 10.1186/s13227-016-0063-5
By:
- Smith, Craig A.;
- Farlie, Peter G.;
- Davidson, Nadia M.;
- Roeszler, Kelly N.;
- Hirst, Claire;
- Oshlack, Alicia;
- Lambert, David M.
Publication type:
Article

Found: 22