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Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00195
By:
- Kublanov, Ilya V.;
- Sigalova, Olga M.;
- Gavrilov, Sergey N.;
- Lebedinsky, Alexander V.;
- Rinke, Christian;
- Kovaleva, Olga;
- Chernyh, Nikolai A.;
- Ivanova, Natalia;
- Daum, Chris;
- Reddy, T. B. K.;
- Klenk, Hans-Peter;
- Spring, Stefan;
- Göker, Markus;
- Reva, Oleg N.;
- Miroshnichenko, Margarita L.;
- Kyrpides, Nikos C.;
- Woyke, Tanja;
- Gelfand, Mikhail S.;
- Bonch-Osmolovskaya, Elizaveta A.
Publication type:
Article
Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics.
Published in:
Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02809-4
By:
- Van Goethem, Marc W.;
- Osborn, Andrew R.;
- Bowen, Benjamin P.;
- Andeer, Peter F.;
- Swenson, Tami L.;
- Clum, Alicia;
- Riley, Robert;
- He, Guifen;
- Koriabine, Maxim;
- Sandor, Laura;
- Yan, Mi;
- Daum, Chris G.;
- Yoshinaga, Yuko;
- Makhalanyane, Thulani P.;
- Garcia-Pichel, Ferran;
- Visel, Axel;
- Pennacchio, Len A.;
- O'Malley, Ronan C.;
- Northen, Trent R.
Publication type:
Article
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3
By:
- Högfors-Rönnholm, Eva;
- Lopez-Fernandez, Margarita;
- Christel, Stephan;
- Brambilla, Diego;
- Huntemann, Marcel;
- Clum, Alicia;
- Foster, Brian;
- Foster, Bryce;
- Roux, Simon;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Copeland, Alex;
- Chen, I-Min A.;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.;
- Harmon-Smith, Miranda;
- Eloe-Fadrosh, Emiley A.
Publication type:
Article
High‐throughput identification of novel heat tolerance genes via genome‐wide pooled mutant screens in the model green alga Chlamydomonas reinhardtii.
Published in:
Plant, Cell & Environment, 2023, v. 46, n. 3, p. 865, doi. 10.1111/pce.14507
By:
- Mattoon, Erin M.;
- McHargue, William E.;
- Bailey, Catherine E.;
- Zhang, Ningning;
- Chen, Chen;
- Eckhardt, James;
- Daum, Chris G.;
- Zane, Matt;
- Pennacchio, Christa;
- Schmutz, Jeremy;
- O'Malley, Ronan C.;
- Cheng, Jianlin;
- Zhang, Ru
Publication type:
Article
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25646-9
By:
- Martin, Kara;
- Schmidt, Katrin;
- Toseland, Andrew;
- Boulton, Chris A.;
- Barry, Kerrie;
- Beszteri, Bánk;
- Brussaard, Corina P. D.;
- Clum, Alicia;
- Daum, Chris G.;
- Eloe-Fadrosh, Emiley;
- Fong, Allison;
- Foster, Brian;
- Foster, Bryce;
- Ginzburg, Michael;
- Huntemann, Marcel;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.;
- Lindquist, Erika;
- Mukherjee, Supratim;
- Palaniappan, Krishnaveni
Publication type:
Article
High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 with an incomplete denitrification pathway.
Published in:
Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0140-3
By:
- Zhou, En-Min;
- Murugapiran, Senthil;
- Mefferd, Chrisabelle;
- Liu, Lan;
- Xian, Wen-Dong;
- Yin, Yi-Rui;
- Ming, Hong;
- Yu, Tian-Tian;
- Huntemann, Marcel;
- Clum, Alicia;
- Pillay, Manoj;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mikhailova, Natalia;
- Stamatis, Dimitrios;
- Reddy, T.;
- Ngan, Chew;
- Daum, Chris;
- Shapiro, Nicole;
- Markowitz, Victor
Publication type:
Article
Single‐parent expression drives dynamic gene expression complementation in maize hybrids.
Published in:
Plant Journal, 2021, v. 105, n. 1, p. 93, doi. 10.1111/tpj.15042
By:
- Li, Zhi;
- Zhou, Peng;
- Della Coletta, Rafael;
- Zhang, Tifu;
- Brohammer, Alex B.;
- O'Connor, Christine;
- Vaillancourt, Brieanne;
- Lipzen, Anna;
- Daum, Chris;
- Barry, Kerrie;
- de Leon, Natalia;
- Hirsch, Cory D.;
- Buell, C. Robin;
- Kaeppler, Shawn M.;
- Springer, Nathan M.;
- Hirsch, Candice N.
Publication type:
Article
Diversity and population structure of northern switchgrass as revealed through exome capture sequencing.
Published in:
Plant Journal, 2015, v. 84, n. 4, p. 800, doi. 10.1111/tpj.13041
By:
- Evans, Joseph;
- Crisovan, Emily;
- Barry, Kerrie;
- Daum, Chris;
- Jenkins, Jerry;
- Kunde‐Ramamoorthy, Govindarajan;
- Nandety, Aruna;
- Ngan, Chew Yee;
- Vaillancourt, Brieanne;
- Wei, Chia‐Lin;
- Schmutz, Jeremy;
- Kaeppler, Shawn M.;
- Casler, Michael D.;
- Buell, Carol Robin
Publication type:
Article
The obligate alkalophilic soda‐lake fungus Sodiomyces alkalinus has shifted to a protein diet.
Published in:
Molecular Ecology, 2018, v. 27, n. 23, p. 4808, doi. 10.1111/mec.14912
By:
- Grum‐Grzhimaylo, Alexey A.;
- Falkoski, Daniel L.;
- Heuvel, Joost;
- Valero‐Jiménez, Claudio A.;
- Min, Byoungnam;
- Choi, In‐Geol;
- Lipzen, Anna;
- Daum, Chris G.;
- Aanen, Duur K.;
- Tsang, Adrian;
- Henrissat, Bernard;
- Bilanenko, Elena N.;
- Vries, Ronald P.;
- Kan, Jan A. L.;
- Grigoriev, Igor V.;
- Debets, Alfons J. M.
Publication type:
Article
Genomic variation within the maize stiff‐stalk heterotic germplasm pool.
Published in:
Plant Genome, 2021, v. 14, n. 3, p. 1, doi. 10.1002/tpg2.20114
By:
- Bornowski, Nolan;
- Michel, Kathryn J.;
- Hamilton, John P.;
- Ou, Shujun;
- Seetharam, Arun S.;
- Jenkins, Jerry;
- Grimwood, Jane;
- Plott, Chris;
- Shu, Shengqiang;
- Talag, Jayson;
- Kennedy, Megan;
- Hundley, Hope;
- Singan, Vasanth R.;
- Barry, Kerrie;
- Daum, Chris;
- Yoshinaga, Yuko;
- Schmutz, Jeremy;
- Hirsch, Candice N.;
- Hufford, Matthew B.;
- de Leon, Natalia
Publication type:
Article
Coassembly and binning of a twenty-year metagenomic time-series from Lake Mendota.
Published in:
Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03826-8
By:
- Oliver, Tiffany;
- Varghese, Neha;
- Roux, Simon;
- Schulz, Frederik;
- Huntemann, Marcel;
- Clum, Alicia;
- Foster, Brian;
- Foster, Bryce;
- Riley, Robert;
- LaButti, Kurt;
- Egan, Robert;
- Hajek, Patrick;
- Mukherjee, Supratim;
- Ovchinnikova, Galina;
- Reddy, T. B. K.;
- Calhoun, Sara;
- Hayes, Richard D.;
- Rohwer, Robin R.;
- Zhou, Zhichao;
- Daum, Chris
Publication type:
Article
The genomic landscape of molecular responses to natural drought stress in Panicum hallii.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07669-x
By:
- Lovell, John T.;
- Jenkins, Jerry;
- Lowry, David B.;
- Mamidi, Sujan;
- Sreedasyam, Avinash;
- Weng, Xiaoyu;
- Barry, Kerrie;
- Bonnette, Jason;
- Campitelli, Brandon;
- Daum, Chris;
- Gordon, Sean P.;
- Gould, Billie A.;
- Khasanova, Albina;
- Lipzen, Anna;
- MacQueen, Alice;
- Palacio-Mejía, Juan Diego;
- Plott, Christopher;
- Shakirov, Eugene V.;
- Shu, Shengqiang;
- Yoshinaga, Yuko
Publication type:
Article
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.
Published in:
Molecular Biology & Evolution, 2023, v. 40, n. 3, p. 1, doi. 10.1093/molbev/msad045
By:
- Plett, Jonathan M;
- Miyauchi, Shingo;
- Morin, Emmanuelle;
- Plett, Krista;
- Wong-Bajracharya, Johanna;
- Pereira, Maira de Freitas;
- Kuo, Alan;
- Henrissat, Bernard;
- Drula, Elodie;
- Wojtalewicz, Dominika;
- Riley, Robert;
- Pangilinan, Jasmyn;
- Andreopoulos, William;
- LaButti, Kurt;
- Daum, Chris;
- Yoshinaga, Yuko;
- Fauchery, Laure;
- Ng, Vivian;
- Lipzen, Anna;
- Barry, Kerrie
Publication type:
Article
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.
Published in:
Molecular Biology & Evolution, 2016, v. 33, n. 4, p. 959, doi. 10.1093/molbev/msv337
By:
- Nagy, László G.;
- Riley, Robert;
- Tritt, Andrew;
- Adam, Catherine;
- Daum, Chris;
- Floudas, Dimitrios;
- Sun, Hui;
- Yadav, Jagjit S.;
- Pangilinan, Jasmyn;
- Larsson, Karl-Henrik;
- Matsuura, Kenji;
- Barry, Kerrie;
- Labutti, Kurt;
- Kuo, Rita;
- Ohm, Robin A.;
- Bhattacharya, Sukanta S.;
- Takashi Shirouzu;
- Yuko Yoshinaga;
- Martin, Francis M.;
- Grigoriev, Igor V.
Publication type:
Article
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0132-4
By:
- Nowinski, Brent;
- Smith, Christa B.;
- Thomas, Courtney M.;
- Esson, Kaitlin;
- Marin, Roman;
- Preston, Christina M.;
- Birch, James M.;
- Scholin, Christopher A.;
- Huntemann, Marcel;
- Clum, Alicia;
- Foster, Brian;
- Foster, Bryce;
- Roux, Simon;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Copeland, Alex;
- Chen, I.-Min A.
Publication type:
Article
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0141-3
By:
- Camargo, Antonio Pedro;
- de Souza, Rafael Soares Correa;
- de Britto Costa, Patrícia;
- Gerhardt, Isabel Rodrigues;
- Dante, Ricardo Augusto;
- Teodoro, Grazielle Sales;
- Abrahão, Anna;
- Lambers, Hans;
- Carazzolle, Marcelo Falsarella;
- Huntemann, Marcel;
- Clum, Alicia;
- Foster, Brian;
- Foster, Bryce;
- Roux, Simon;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Copeland, Alex
Publication type:
Article
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory.
Published in:
Plant Cell, 2023, v. 35, n. 2, p. 644, doi. 10.1093/plcell/koac347
By:
- Craig, Rory J;
- Gallaher, Sean D;
- Shu, Shengqiang;
- Salomé, Patrice A;
- Jenkins, Jerry W;
- Blaby-Haas, Crysten E;
- Purvine, Samuel O;
- O'Donnell, Samuel;
- Barry, Kerrie;
- Grimwood, Jane;
- Strenkert, Daniela;
- Kropat, Janette;
- Daum, Chris;
- Yoshinaga, Yuko;
- Goodstein, David M;
- Vallon, Olivier;
- Schmutz, Jeremy;
- Merchant, Sabeeha S
Publication type:
Article
A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes.
Published in:
Plant Journal, 2024, v. 117, n. 5, p. 1543, doi. 10.1111/tpj.16582
By:
- Jiao, Yinping;
- Nigam, Deepti;
- Barry, Kerrie;
- Daum, Chris;
- Yoshinaga, Yuko;
- Lipzen, Anna;
- Khan, Adil;
- Parasa, Sai‐Praneeth;
- Wei, Sharon;
- Lu, Zhenyuan;
- Tello‐Ruiz, Marcela K.;
- Dhiman, Pallavi;
- Burow, Gloria;
- Hayes, Chad;
- Chen, Junping;
- Brandizzi, Federica;
- Mortimer, Jenny;
- Ware, Doreen;
- Xin, Zhanguo
Publication type:
Article
Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.
Published in:
Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7
By:
- Martínez-Hidalgo, Pilar;
- Humm, Ethan A.;
- Still, David W.;
- Shi, Baochen;
- Pellegrini, Matteo;
- de la Roca, Gabriela;
- Veliz, Esteban;
- Maymon, Maskit;
- Bru, Pierrick;
- Huntemann, Marcel;
- Clum, Alicia;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.;
- Shapiro, Nicole;
- Eloe-Fadrosh, Emiley A.
Publication type:
Article
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.
Published in:
Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01254-7
By:
- Duncan, Anthony;
- Barry, Kerrie;
- Daum, Chris;
- Eloe-Fadrosh, Emiley;
- Roux, Simon;
- Schmidt, Katrin;
- Tringe, Susannah G.;
- Valentin, Klaus U.;
- Varghese, Neha;
- Salamov, Asaf;
- Grigoriev, Igor V.;
- Leggett, Richard M.;
- Moulton, Vincent;
- Mock, Thomas
Publication type:
Article
Fungal ecological strategies reflected in gene transcription ‐ a case study of two litter decomposers.
Published in:
Environmental Microbiology, 2020, v. 22, n. 3, p. 1089, doi. 10.1111/1462-2920.14873
By:
- Barbi, Florian;
- Kohler, Annegret;
- Barry, Kerrie;
- Baskaran, Preetisri;
- Daum, Chris;
- Fauchery, Laure;
- Ihrmark, Katarina;
- Kuo, Alan;
- LaButti, Kurt;
- Lipzen, Anna;
- Morin, Emmanuelle;
- Grigoriev, Igor V.;
- Henrissat, Bernard;
- Lindahl, Björn D.;
- Martin, Francis
Publication type:
Article
Multi‐omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.
Published in:
Environmental Microbiology, 2019, v. 21, n. 10, p. 3909, doi. 10.1111/1462-2920.14741
By:
- Tan, Hao;
- Kohler, Annegret;
- Miao, Renyun;
- Liu, Tianhai;
- Zhang, Qiang;
- Zhang, Bo;
- Jiang, Lin;
- Wang, Yong;
- Xie, Liyuan;
- Tang, Jie;
- Li, Xiaolin;
- Liu, Lixu;
- Grigoriev, Igor V.;
- Daum, Chris;
- LaButti, Kurt;
- Lipzen, Anna;
- Kuo, Alan;
- Morin, Emmanuelle;
- Drula, Elodie;
- Henrissat, Bernard
Publication type:
Article
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples.
Published in:
Viruses (1999-4915), 2022, v. 14, n. 12, p. 2775, doi. 10.3390/v14122775
By:
- Kimbrel, Jeffrey;
- Moon, Joseph;
- Avila-Herrera, Aram;
- Martí, Jose Manuel;
- Thissen, James;
- Mulakken, Nisha;
- Sandholtz, Sarah H.;
- Ferrell, Tyshawn;
- Daum, Chris;
- Hall, Sara;
- Segelke, Brent;
- Arrildt, Kathryn T.;
- Messenger, Sharon;
- Wadford, Debra A.;
- Jaing, Crystal;
- Allen, Jonathan E.;
- Borucki, Monica K.
Publication type:
Article
Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi.
Published in:
Genome Biology & Evolution, 2023, v. 15, n. 1, p. 1, doi. 10.1093/gbe/evac185
By:
- Reynolds, Nicole K;
- Stajich, Jason E;
- Benny, Gerald L;
- Barry, Kerrie;
- Mondo, Stephen;
- LaButti, Kurt;
- Lipzen, Anna;
- Daum, Chris;
- Grigoriev, Igor V;
- Ho, Hsiao-Man;
- Crous, Pedro W;
- Spatafora, Joseph W;
- Smith, Matthew E
Publication type:
Article
Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems.
Published in:
New Phytologist, 2024, v. 242, n. 4, p. 1676, doi. 10.1111/nph.19471
By:
- Auer, Lucas;
- Buée, Marc;
- Fauchery, Laure;
- Lombard, Vincent;
- Barry, Kerry W.;
- Clum, Alicia;
- Copeland, Alex;
- Daum, Chris;
- Foster, Brian;
- LaButti, Kurt;
- Singan, Vasanth;
- Yoshinaga, Yuko;
- Martineau, Christine;
- Alfaro, Manuel;
- Castillo, Federico J.;
- Imbert, J. Bosco;
- Ramírez, Lucia;
- Castanera, Raúl;
- Pisabarro, Antonio G.;
- Finlay, Roger
Publication type:
Article
Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population.
Published in:
Genetics, 2022, v. 221, n. 2, p. 1, doi. 10.1093/genetics/iyac063
By:
- Michel, Kathryn J.;
- Lima, Dayane C.;
- Hundley, Hope;
- Singan, Vasanth;
- Yuko Yoshinaga;
- Daum, Chris;
- Barry, Kerrie;
- Broman, Karl W.;
- Buell, C. Robin;
- de Leon, Natalia;
- Kaeppler, Shawn M.
Publication type:
Article
Evaluation of co-circulating pathogens and microbiome from COVID-19 infections.
Published in:
PLoS ONE, 2022, v. 17, n. 12, p. 1, doi. 10.1371/journal.pone.0278543
By:
- Thissen, James B.;
- Morrison, Michael D.;
- Mulakken, Nisha;
- Nelson, William C.;
- Daum, Chris;
- Messenger, Sharon;
- Wadford, Debra A.;
- Jaing, Crystal
Publication type:
Article
Overexpression of REDUCED WALL ACETYLATION C increases xylan acetylation and biomass recalcitrance in Populus.
Published in:
Plant Physiology, 2024, v. 194, n. 1, p. 243, doi. 10.1093/plphys/kiad377
By:
- Zhang, Jin;
- Wang, Xiaqin;
- Wang, Hsin-Tzu;
- Qiao, Zhenzhen;
- Yao, Tao;
- Xie, Meng;
- Urbanowicz, Breeanna R;
- Zeng, Wei;
- Jawdy, Sara S;
- Gunter, Lee E;
- Yang, Xiaohan;
- Czarnecki, Olaf;
- Regan, Sharon;
- Seguin, Armand;
- Rottmann, William;
- Winkeler, Kimberly A;
- Sykes, Robert;
- Lipzen, Anna;
- Daum, Chris;
- Barry, Kerrie
Publication type:
Article
Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids.
Published in:
Plant Physiology, 2020, v. 182, n. 1, p. 318, doi. 10.1104/pp.19.00817
By:
- Crisp, Peter A.;
- Hammond, Reza;
- Peng Zhou;
- Vaillancourt, Brieanne;
- Lipzen, Anna;
- Daum, Chris;
- Barry, Kerrie;
- de Leon, Natalia;
- Buell, C. Robin;
- Kaeppler, Shawn M.;
- Meyers, Blake C.;
- Hirsch, Candice N.;
- Springer, Nathan M.
Publication type:
Article
A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5734-x
By:
- Cooper, Elizabeth A.;
- Brenton, Zachary W.;
- Flinn, Barry S.;
- Jenkins, Jerry;
- Shu, Shengqiang;
- Flowers, Dave;
- Luo, Feng;
- Wang, Yunsheng;
- Xia, Penny;
- Barry, Kerrie;
- Daum, Chris;
- Lipzen, Anna;
- Yoshinaga, Yuko;
- Schmutz, Jeremy;
- Saski, Christopher;
- Vermerris, Wilfred;
- Kresovich, Stephen
Publication type:
Article
Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi.
Published in:
Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05299-8
By:
- Longley, Reid;
- Robinson, Aaron;
- Liber, Julian A.;
- Bryson, Abigail E.;
- Morales, Demosthenes P.;
- LaButti, Kurt;
- Riley, Robert;
- Mondo, Stephen J.;
- Kuo, Alan;
- Yoshinaga, Yuko;
- Daum, Chris;
- Barry, Kerrie;
- Grigoriev, Igor V.;
- Desirò, Alessandro;
- Chain, Patrick S. G.;
- Bonito, Gregory
Publication type:
Article
High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk.
Published in:
Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
By:
- Laviad-Shitrit, Sivan;
- Göker, Markus;
- Huntemann, Marcel;
- Clum, Alicia;
- Pillay, Manoj;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mikhailova, Natalia;
- Stamatis, Dimitrios;
- Reddy, T. B. K.;
- Daum, Chris;
- Shapiro, Nicole;
- Markowitz, Victor;
- Ivanova, Natalia;
- Woyke, Tanja;
- Klenk, Hans-Peter;
- Kyrpides, Nikos C.;
- Halpern, Malka
Publication type:
Article
High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.
Published in:
Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0258-y
By:
- Matrosova, Vera Y.;
- Gaidamakova, Elena K.;
- Makarova, Kira S.;
- Grichenko, Olga;
- Klimenkova, Polina;
- Volpe, Robert P.;
- Tkavc, Rok;
- Ertem, Gözen;
- Conze, Isabel H.;
- Brambilla, Evelyne;
- Huntemann, Marcel;
- Clum, Alicia;
- Pillay, Manoj;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mikhailova, Natalia;
- Stamatis, Dimitrios;
- Reddy, T. B. K.;
- Daum, Chris;
- Shapiro, Nicole
Publication type:
Article
High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).
Published in:
Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4
By:
- Patil, Yogita;
- Müller, Nicolai;
- Schink, Bernhard;
- Whitman, William B.;
- Huntemann, Marcel;
- Clum, Alicia;
- Pillay, Manoj;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mikhailova, Natalia;
- Stamatis, Dimitrios;
- Reddy, T. B. K.;
- Daum, Chris;
- Shapiro, Nicole;
- Ivanova, Natalia;
- Kyrpides, Nikos;
- Woyke, Tanja;
- Junghare, Madan
Publication type:
Article
Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria.
Published in:
Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0229-3
By:
- Hutt, Lee P.;
- Huntemann, Marcel;
- Clum, Alicia;
- Pillay, Manoj;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mikhailova, Natalia;
- Stamatis, Dimitrios;
- Reddy, Tatiparthi;
- Daum, Chris;
- Shapiro, Nicole;
- Ivanova, Natalia;
- Kyrpides, Nikos;
- Woyke, Tanja;
- Boden, Rich
Publication type:
Article
Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.
Published in:
Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0
By:
- Boden, Rich;
- Hutt, Lee P.;
- Huntemann, Marcel;
- Clum, Alicia;
- Pillay, Manoj;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mikhailova, Natalia;
- Stamatis, Dimitrios;
- Reddy, Tatiparthi;
- Chew Yee Ngan;
- Daum, Chris;
- Shapiro, Nicole;
- Markowitz, Victor;
- Ivanova, Natalia;
- Woyke, Tanja;
- Kyrpides, Nikos
Publication type:
Article
Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data.
Published in:
New Phytologist, 2017, v. 213, n. 1, p. 154, doi. 10.1111/nph.14101
By:
- Grabowski, Paul P.;
- Evans, Joseph;
- Daum, Chris;
- Deshpande, Shweta;
- Barry, Kerrie W.;
- Kennedy, Megan;
- Ramstein, Guillaume;
- Kaeppler, Shawn M.;
- Buell, C. Robin;
- Jiang, Yiwei;
- Casler, Michael D.
Publication type:
Article
A comparative genomics study of 23 Aspergillus species from section Flavi.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14051-y
By:
- Kjærbølling, Inge;
- Vesth, Tammi;
- Frisvad, Jens C.;
- Nybo, Jane L.;
- Theobald, Sebastian;
- Kildgaard, Sara;
- Petersen, Thomas Isbrandt;
- Kuo, Alan;
- Sato, Atsushi;
- Lyhne, Ellen K.;
- Kogle, Martin E.;
- Wiebenga, Ad;
- Kun, Roland S.;
- Lubbers, Ronnie J. M.;
- Mäkelä, Miia R.;
- Barry, Kerrie;
- Chovatia, Mansi;
- Clum, Alicia;
- Daum, Chris;
- Haridas, Sajeet
Publication type:
Article
Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence.
Published in:
PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0188914
By:
- Yassin, Atteyet F.;
- Langenberg, Stefan;
- Huntemann, Marcel;
- Clum, Alicia;
- Pillay, Manoj;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mikhailova, Natalia;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Shapiro, Nicole;
- Ivanova, Natalia;
- Woyke, Tanja;
- Kyrpides, Nikos C.
Publication type:
Article
The Epigenomic Landscape of Prokaryotes.
Published in:
PLoS Genetics, 2016, v. 12, n. 2, p. 1, doi. 10.1371/journal.pgen.1005854
By:
- Blow, Matthew J.;
- Clark, Tyson A.;
- Daum, Chris G.;
- Deutschbauer, Adam M.;
- Fomenkov, Alexey;
- Fries, Roxanne;
- Froula, Jeff;
- Kang, Dongwan D.;
- Malmstrom, Rex R.;
- Morgan, Richard D.;
- Posfai, Janos;
- Singh, Kanwar;
- Visel, Axel;
- Wetmore, Kelly;
- Zhao, Zhiying;
- Rubin, Edward M.;
- Korlach, Jonas;
- Pennacchio, Len A.;
- Roberts, Richard J.
Publication type:
Article

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