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High-level Relatedness among Mycobacterium abscessus subsp. massiliense Strains from Widely Separated Outbreaks.
Published in:
Emerging Infectious Diseases, 2014, v. 20, n. 3, p. 364, doi. 10.3201/eid2003.131106
By:
- Tettelin, Hervé;
- Davidson, Rebecca M.;
- Agrawal, Sonia;
- Aitken, Moira L.;
- Shallom, Shamira;
- Hasan, Nabeeh A.;
- Strong, Michael;
- de Moura, Vinicius Calado Nogueira;
- De Groote, Mary Ann;
- Duarte, Rafael S.;
- Hine, Erin;
- Parankush, Sushma;
- Su, Qi;
- Daugherty, Sean C.;
- Fraser, Claire M.;
- Brown-Elliott, Barbara A.;
- Wallace Jr., Richard J.;
- Holland, Steven M.;
- Sampaio, Elizabeth P.;
- Olivier, Kenneth N.
Publication type:
Article
Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis.
Published in:
BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-020-07309-z
By:
- Lin, Mingqun;
- Xiong, Qingming;
- Chung, Matthew;
- Daugherty, Sean C.;
- Nagaraj, Sushma;
- Sengamalay, Naomi;
- Ott, Sandra;
- Godinez, Al;
- Tallon, Luke J.;
- Sadzewicz, Lisa;
- Fraser, Claire;
- Dunning Hotopp, Julie C.;
- Rikihisa, Yasuko
Publication type:
Article
Analysis of complete genome sequence and major surface antigens of Neorickettsia helminthoeca, causative agent of salmon poisoning disease.
Published in:
Microbial Biotechnology, 2017, v. 10, n. 4, p. 933, doi. 10.1111/1751-7915.12731
By:
- Lin, Mingqun;
- Bachman, Katherine;
- Cheng, Zhihui;
- Rikihisa, Yasuko;
- Daugherty, Sean C.;
- Nagaraj, Sushma;
- Sengamalay, Naomi;
- Ott, Sandra;
- Godinez, Al;
- Tallon, Luke J.;
- Sadzewicz, Lisa;
- Fraser, Claire;
- Dunning Hotopp, Julie C.
Publication type:
Article
Corrigendum: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Published in:
2006
By:
- Paulsen, Ian T.;
- Press, Caroline M.;
- Ravel, Jacques;
- Kobayashi, Donald Y.;
- Myers, Garry S. A.;
- Mavrodi, Dmitri V.;
- DeBoy, Robert T.;
- Seshadri, Rekha;
- Ren, Qinghu;
- Madupu, Ramana;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Sullivan, Stephen A.;
- Rosovitz, Mary J.;
- Gwinn, Michelle L.;
- Zhou, Liwei;
- Schneider, Davd J.;
- Cartinhour, Samuel W.
Publication type:
Correction Notice
Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5.
Published in:
Nature Biotechnology, 2005, v. 23, n. 7, p. 873, doi. 10.1038/nbt1110
By:
- Paulsen, Ian T.;
- Press, Caroline M.;
- Ravel, Jacques;
- Kobayashi, Donald Y.;
- Myers, Garry S. A.;
- Mavrodi, Dmitri V.;
- DeBoy, Robert T.;
- Seshadri, Rekha;
- Ren, Qinghu;
- Madupu, Ramana;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Sullivan, Stephen A.;
- Rosovitz, Mary J.;
- Gwinn, Michelle L.;
- Zhou, Liwei;
- Schneider, Davd J.;
- Cartinhour, Samuel W.
Publication type:
Article
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.
Published in:
Nature Biotechnology, 2004, v. 22, n. 5, p. 554, doi. 10.1038/nbt959
By:
- Heidelberg, John F.;
- Seshadri, Rekha;
- Haveman, Shelley A.;
- Hemme, Christopher L.;
- Paulsen, Ian T.;
- Kolonay, James F.;
- Eisen, Jonathan A.;
- Ward, Naomi;
- Methe, Barbara;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Deboy, Robert T.;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Madupu, Ramana;
- Nelson, William C.;
- Sullivan, Steven A.;
- Fouts, Derrick;
- Haft, Daniel H.;
- Selengut, Jeremy
Publication type:
Article
Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis.
Published in:
Nature Biotechnology, 2002, v. 20, n. 11, p. 1118, doi. 10.1038/nbt749
By:
- Heidelberg, John F.;
- Paulsen, Ian T.;
- Nelson, Karen E.;
- Gaidos, Eric J.;
- Nelson, William C.;
- Read, Timothy D.;
- Eisen, Jonathan A.;
- Seshadri, Rekha;
- Ward, Naomi;
- Methe, Barbara;
- Clayton, Rebecca A.;
- Meyer, Terry;
- Tsapin, Alexandre;
- Scott, James;
- Beanan, Maureen;
- Brinkac, Lauren;
- Daugherty, Sean;
- DeBoy, Robert T.;
- Dodson, Robert J.;
- Durkin, A. Scott
Publication type:
Article
Efficient Enrichment of Bacterial mRNA from Host-Bacteria Total RNA Samples.
Published in:
Scientific Reports, 2016, p. 34850, doi. 10.1038/srep34850
By:
- Kumar, Nikhil;
- Lin, Mingqun;
- Zhao, Xuechu;
- Ott, Sandra;
- Santana-Cruz, Ivette;
- Daugherty, Sean;
- Rikihisa, Yasuko;
- Sadzewicz, Lisa;
- Tallon, Luke J.;
- Fraser, Claire M.;
- Dunning Hotopp, Julie C.
Publication type:
Article
Transcriptional Attenuation Controls Macrolide Inducible Efflux and Resistance in Streptococcus pneumoniae and in Other Gram-Positive Bacteria Containing mef/mel(msr(D)) Elements.
Published in:
PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0116254
By:
- Chancey, Scott T.;
- Bai, Xianhe;
- Kumar, Nikhil;
- Drabek, Elliott F.;
- Daugherty, Sean C.;
- Colon, Thomas;
- Ott, Sandra;
- Sengamalay, Naomi;
- Sadzewicz, Lisa;
- Tallon, Luke J.;
- Fraser, Claire M.;
- Tettelin, Hervé;
- Stephens, David S.
Publication type:
Article
Whole Genome Sequencing to Investigate the Emergence of Clonal Complex 23 Neisseria meningitidis Serogroup Y Disease in the United States.
Published in:
PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035699
By:
- Krauland, Mary G.;
- Hotopp, Julie C. Dunning;
- Riley, David R.;
- Daugherty, Sean C.;
- Marsh, Jane W.;
- Messonnier, Nancy E.;
- Mayer, Leonard W.;
- Tettelin, Hervé;
- Harrison, Lee H.
Publication type:
Article
Differences in Genotype and Virulence among Four Multidrug-Resistant Streptococcus pneumoniae Isolates Belonging to the PMEN1 Clone.
Published in:
PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028850
By:
- Hiller, N. Luisa;
- Eutsey, Rory A.;
- Powell, Evan;
- Earl, Joshua P.;
- Janto, Benjamin;
- Martin, Darren P.;
- Dawid, Suzanne;
- Ahmed, Azad;
- Longwell, Mark J.;
- Dahlgren, Margaret E.;
- Ezzo, Suzanne;
- Tettelin, Herve;
- Daugherty, Sean C.;
- Mitchell, Timothy J.;
- Hillman, Todd A.;
- Buchinsky, Farrel J.;
- Tomasz, Alexander;
- Lencastre, Herminia de;
- Sá-Leão, Raquel;
- Post, J. Christopher
Publication type:
Article
10061 Assessing immunogenicity of an Ebola vaccine in humans using a systems biology approach.
Published in:
2021
By:
- Martin, Olivia;
- Song, Yang;
- Daugherty, Sean;
- Sztein, Rezwan Wahidrcelo B.;
- Fraser, Claire M.
Publication type:
Abstract
Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.
Published in:
BMC Genomics, 2009, v. 10, p. 447, doi. 10.1186/1471-2164-10-447
By:
- Risso, Carla;
- Sun, Jun;
- Kai Zhuang;
- Mahadevan, Radhakrishnan;
- DeBoy, Robert;
- Ismail, Wael;
- Shrivastava, Susmita;
- Huot, Heather;
- Kothari, Sagar;
- Daugherty, Sean;
- Bui, Olivia;
- Schilling, Christophe H.;
- Lovley, Derek R.;
- Methé, Barbara A.
Publication type:
Article
The FibRumBa Database: A Resource for Biologists with Interests in Gastrointestinal Microbial Ecology, Plant Biomass Degradation, and Anaerobic Microbiology.
Published in:
2010
By:
- Morrison, Mark;
- Daugherty, Sean C.;
- Nelson, William C.;
- Davidsen, Tanja;
- Nelson, Karen E.
Publication type:
Web Site Review
Whole genome comparisons of serotype 4b and 1/2a strains of the food‐borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.
Published in:
Nucleic Acids Research, 2004, v. 32, n. 8, p. 2386, doi. 10.1093/nar/gkh562
By:
- Nelson, Karen E.;
- Fouts, Derrick E.;
- Mongodin, Emmanuel F.;
- Ravel, Jacques;
- DeBoy, Robert T.;
- Kolonay, James F.;
- Rasko, David A.;
- Angiuoli, Samuel V.;
- Gill, Steven R.;
- Paulsen, Ian T.;
- Peterson, Jeremy;
- White, Owen;
- Nelson, William C.;
- Nierman, William;
- Beanan, Maureen J.;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Madupu, Ramana
Publication type:
Article
RNAseq Analysis of the Drosophila Response to the Entomopathogenic Nematode Steinernema.
Published in:
G3: Genes | Genomes | Genetics, 2017, v. 7, n. 6, p. 1955, doi. 10.1534/g3.117.041004
By:
- Yadav, Shruti;
- Daugherty, Sean;
- Shetty, Amol Carl;
- Eleftherianos, Ioannis
Publication type:
Article
An integrated genomic and transcriptomic survey of mucormycosis-causing fungi.
Published in:
Nature Communications, 2016, v. 7, n. 7, p. 12218, doi. 10.1038/ncomms12218
By:
- Chibucos, Marcus C.;
- Soliman, Sameh;
- Gebremariam, Teclegiorgis;
- Lee, Hongkyu;
- Daugherty, Sean;
- Orvis, Joshua;
- Shetty, Amol C.;
- Crabtree, Jonathan;
- Hazen, Tracy H.;
- Etienne, Kizee A.;
- Kumari, Priti;
- O'Connor, Timothy D.;
- Rasko, David A.;
- Filler, Scott G.;
- Fraser, Claire M.;
- Lockhart, Shawn R.;
- Skory, Christopher D.;
- Ibrahim, Ashraf S.;
- Bruno, Vincent M.
Publication type:
Article
Comment on: "A Comprehensive Approach to Managing Methamphetamine-Associated Cardiomyopathy".
Published in:
American Journal of Cardiovascular Drugs, 2022, v. 22, n. 4, p. 461, doi. 10.1007/s40256-022-00539-4
By:
- Bonomo, Yvonne;
- Daugherty, Sean;
- Norman, Amanda
Publication type:
Article
Effect of a small molecule Lipid II binder on bacterial cell wall stress.
Published in:
Infection & Drug Resistance, 2017, v. 10, p. 69, doi. 10.2147/IDR.S126254
By:
- Malin, Jakob;
- Shetty, Amol C.;
- Daugherty, Sean C.;
- de Leeuw, Erik P. H.
Publication type:
Article
Streptococcus pneumoniae in the heart subvert the host response through biofilm-mediated resident macrophage killing.
Published in:
PLoS Pathogens, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.ppat.1006582
By:
- Shenoy, Anukul T.;
- Brissac, Terry;
- Gilley, Ryan P.;
- Kumar, Nikhil;
- Wang, Yong;
- Gonzalez-Juarbe, Norberto;
- Hinkle, Whitney S.;
- Daugherty, Sean C.;
- Shetty, Amol C.;
- Ott, Sandra;
- Tallon, Luke J.;
- Deshane, Jessy;
- Tettelin, Hervé;
- Orihuela, Carlos J.
Publication type:
Article
Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters.
Published in:
PLoS Biology, 2006, v. 4, n. 6, p. e188, doi. 10.1371/journal.pbio.0040188
By:
- Wu, Dongying;
- Daugherty, Sean C.;
- van Aken, Susan E.;
- Pai, Grace H.;
- Watkins, Kisha L.;
- Khouri, Hoda;
- Tallon, Luke J.;
- Zaborsky, Jennifer M.;
- Dunbar, Helen E.;
- Tran, Phat L.;
- Moran, Nancy A.;
- Eisen, Jonathan A.
Publication type:
Article
Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species.
Published in:
PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030015
By:
- Fouts, Derrick E;
- Mongodin, Emmanuel F;
- Mandrell, Robert E;
- Miller, William G;
- Rasko, David A;
- Ravel, Jacques;
- Brinkac, Lauren M;
- DeBoy, Robert T;
- Parker, Craig T;
- Daugherty, Sean C;
- Dodson, Robert J;
- Durkin, A. Scott;
- Madupu, Ramana;
- Sullivan, Steven A;
- Shetty, Jyoti U;
- Ayodeji, Mobolanle A;
- Shvartsbeyn, Alla;
- Schatz, Michael C;
- Badger, Jonathan H;
- Fraser, Claire M
Publication type:
Article
Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species.
Published in:
PLoS Biology, 2005, v. 3, n. 1, p. 72, doi. 10.1371/journal.pbio.0030015
By:
- Foutsi, Derrick E.;
- Mongodin, Emmanuel F.;
- Mandrell, Robert E.;
- Miller, William G.;
- Rasko, David A.;
- Ravel, Jacques;
- Brinkac, Lauren M.;
- Deboy, Robert T.;
- Parker, Craig T.;
- Daugherty, Sean C.;
- Dodson, Robert J.;
- Durkin, A. Scott;
- Ramana Madupu;
- Sullivan, Steven A.;
- Shetty, Jyoti U.;
- Ayodeji, Mobolanle A.;
- Shvartsbeyn, Alla;
- Schatz, Michael C.;
- Badger, Jonathan H.;
- Fraser, Claire M.
Publication type:
Article
Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Genome Overrun by Mobile Genetic Elements.
Published in:
PLoS Biology, 2004, v. 2, n. 3, p. 1, doi. 10.1371/journal.pbio.0020069
By:
- Wu, Martin;
- Sun, Ling V;
- Vamathevan, Jessica;
- Riegler, Markus;
- Deboy, Robert;
- Brownlie, Jeremy C;
- McGraw, Elizabeth A;
- Martin, William;
- Esser, Christian;
- Ahmadinejad, Nahal;
- Wiegand, Christian;
- Madupu, Ramana;
- Beanan, Maureen J;
- Brinkac, Lauren M;
- Daugherty, Sean C;
- Durkin, A. Scott;
- Kolonay, James F;
- Nelson, William C;
- Mohamoud, Yasmin;
- Lee, Perris
Publication type:
Article
Phylogenomics of the Reproductive Parasite Wolbachia pipientis w Mel:A Streamlined Genome Overrun by Mobile Genetic Elements.
Published in:
PLoS Biology, 2004, v. 2, n. 3, p. 327
By:
- Sun, Ling V.;
- Deboy, Robert;
- Brownlie, Jeremy C.;
- McGraw, Elizabeth A.;
- Martin, William;
- Esser, Christian;
- Ahmadinejad, Nahal;
- Madupu, Ramana;
- Beanan, Maureen J.;
- Brinkac, Lauren M.;
- Daugherty, Sean C.;
- Durkin, A. Scott;
- Kolonay, James F.;
- Nelson, William C.;
- Mohamoud, Yasmin;
- Lee, Perris Lee;
- Berry, Kristi;
- Utterback, Teresa;
- Nierman, William C.;
- Paulsen, Ian T.
Publication type:
Article
Complete Genome Sequence of the N<sub>2</sub>-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice.
Published in:
PLoS Genetics, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pgen.1000141
By:
- Fouts, Derrick E.;
- Tyler, Heather L.;
- DeBoy, Robert T.;
- Daugherty, Sean;
- Qinghu Ren;
- Badger, Jonathan H.;
- Durkin, Anthony S.;
- Huot, Heather;
- Shrivastava, Susmita;
- Kothari, Sagar;
- Dodson, Robert J.;
- Mohamoud, Yasmin;
- Khouri, Hoda;
- Roesch, Luiz F. W.;
- Krogfelt, Karen A.;
- Struve, Carsten;
- Triplett^2, Eric W.;
- Methé, Barbara A.
Publication type:
Article
Secrets of Soil Survival Revealed by the Genome Sequence of Arthrobacter aurescens TC1.
Published in:
PLoS Genetics, 2006, v. 3, n. 6, p. 2094, doi. 10.1371/journal.pgen.0020214
By:
- Mongodin, Emmanuel F.;
- Shapir, Nir;
- Daugherty, Sean C.;
- DeBoy, Robert T.;
- Emerson, Joanne B.;
- Shvartzbeyn, Alla;
- Radune, Diana;
- Vamathevan, Jessica;
- Riggs, Florenta;
- Grinberg, Viktoria;
- Khouri, Hoda;
- Wackett, Lawrence P.;
- Nelson, Karen E.;
- Sadowsky, Michael J.
Publication type:
Article
Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901.
Published in:
2006
By:
- Wu, Martin;
- Ren, Qinghu;
- Durkin, A. Scott;
- Daugherty, Sean C.;
- Brinkac, Lauren M.;
- Dodson, Robert J.;
- Madupu, Ramana;
- Sullivan, Steven A.;
- Kolonay, James F.;
- Haft, Daniel H.;
- Nelson, William C.;
- Tallon, Luke J.;
- Jones, Kristine M.;
- Ulrich, Luke E.;
- Gonzalez, Juan M.;
- Zhulin, Igor B.;
- Robb, Frank T.;
- Eisen, Jonathan A.
Publication type:
Correction Notice
Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901.
Published in:
PLoS Genetics, 2005, v. 1, n. 5, p. 563, doi. 10.1371/journal.pgen.0010065
By:
- Wu, Martin;
- Ren, Qinghu;
- Durkin, A. Scott;
- Daugherty, Sean C.;
- Brinkac, Lauren M.;
- Dodson, Robert J.;
- Madupu, Ramana;
- Sullivan, Steven A.;
- Kolonay, James F.;
- Nelson, William C.;
- Tallon, Luke J.;
- Jones, Kristine M.;
- Ulrich, Luke E.;
- Gonzalez, Juan M.;
- Zhulin, Igor B.;
- Robb, Frank T.;
- Eisen, Jonathan A.;
- Richardson, Paul M.
Publication type:
Article
Cover, Volume 43, Issue 2.
Published in:
Human Mutation, 2022, v. 43, n. 2, p. i, doi. 10.1002/humu.24334
By:
- Sarafrazi, Soodabeh;
- Daugherty, Sean C.;
- Miller, Nicole;
- Boada, Patrick;
- Carpenter, Thomas O.;
- Chunn, Lauren;
- Dill, Kariena;
- Econs, Michael J.;
- Eisenbeis, Scott;
- Imel, Erik A.;
- Johnson, Britt;
- Kiel, Mark J.;
- Krolczyk, Stan;
- Ramesan, Prameela;
- Truty, Rebecca;
- Sabbagh, Yves
Publication type:
Article
Novel PHEX gene locus‐specific database: Comprehensive characterization of vast number of variants associated with X‐linked hypophosphatemia (XLH).
Published in:
Human Mutation, 2022, v. 43, n. 2, p. 143, doi. 10.1002/humu.24296
By:
- Sarafrazi, Soodabeh;
- Daugherty, Sean C.;
- Miller, Nicole;
- Boada, Patrick;
- Carpenter, Thomas O.;
- Chunn, Lauren;
- Dill, Kariena;
- Econs, Michael J.;
- Eisenbeis, Scott;
- Imel, Erik A.;
- Johnson, Britt;
- Kiel, Mark J.;
- Krolczyk, Stan;
- Ramesan, Prameela;
- Truty, Rebecca;
- Sabbagh, Yves
Publication type:
Article
RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates.
Published in:
Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00569
By:
- Hazen, Tracy H.;
- Daugherty, Sean C.;
- Shetty, Amol;
- Mahurkar, Anup A.;
- White, Owen;
- Kaper, James B.;
- Rasko, David A.
Publication type:
Article
Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 738, doi. 10.1186/1471-2164-15-738
By:
- Ioannidis, Panagiotis;
- Yong Lu;
- Kumar, Nikhil;
- Creasy, Todd;
- Daugherty, Sean;
- Chibucos, Marcus C.;
- Orvis, Joshua;
- Shetty, Amol;
- Ott, Sandra;
- Flowers, Melissa;
- Sengamalay, Naomi;
- Tallon, Luke J.;
- Pick, Leslie;
- Dunning Hotopp, Julie C.
Publication type:
Article

Found: 33