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MitoBreak: the mitochondrial DNA breakpoints database.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D1261, doi. 10.1093/nar/gkt982
By:
- Damas, Joana;
- Carneiro, João;
- Amorim, António;
- Pereira, Filipe
Publication type:
Article
Mitochondrial DNA deletions are associated with non-B DNA conformations.
Published in:
Nucleic Acids Research, 2012, v. 40, n. 16, p. 7606, doi. 10.1093/nar/gks500
By:
- Damas, Joana;
- Carneiro, João;
- Gonçalves, Joana;
- Stewart, James B.;
- Samuels, David C.;
- Amorim, António;
- Pereira, Filipe
Publication type:
Article
Digital PCR methods improve detection sensitivity and measurement precision of low abundance mtDNA deletions.
Published in:
Scientific Reports, 2016, p. 25186, doi. 10.1038/srep25186
By:
- Belmonte, Frances R.;
- Martin, James L.;
- Frescura, Kristin;
- Damas, Joana;
- Pereira, Filipe;
- Tarnopolsky, Mark A.;
- Kaufman, Brett A.
Publication type:
Article
An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi).
Published in:
GigaScience, 2019, v. 8, n. 8, p. N.PAG, doi. 10.1093/gigascience/giz090
By:
- Farré, Marta;
- Li, Qiye;
- Darolti, Iulia;
- Zhou, Yang;
- Damas, Joana;
- Proskuryakova, Anastasia A;
- Kulemzina, Anastasia I;
- Chemnick, Leona G;
- Kim, Jaebum;
- Ryder, Oliver A;
- Ma, Jian;
- Graphodatsky, Alexander S;
- Zhang, Guoije;
- Larkin, Denis M;
- Lewin, Harris A
Publication type:
Article
near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert.
Published in:
GigaScience, 2019, v. 8, n. 2, p. N.PAG, doi. 10.1093/gigascience/giy162
By:
- Farré, Marta;
- Li, Qiye;
- Zhou, Yang;
- Damas, Joana;
- Chemnick, Leona G;
- Kim, Jaebum;
- Ryder, Oliver A;
- Ma, Jian;
- Zhang, Guojie;
- Larkin, Denis M;
- Lewin, Harris A
Publication type:
Article
Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles.
Published in:
Genome Biology & Evolution, 2016, v. 8, n. 8, p. 2442, doi. 10.1093/gbe/evw166
By:
- Farré, Marta;
- Narayan, Jitendra;
- Slavov, Gancho T.;
- Damas, Joana;
- Auvil, Loretta;
- Cai Li;
- Jarvis, Erich D.;
- Burt, David W.;
- Griffin, Darren K.;
- Larkin, Denis M.
Publication type:
Article
Splice-Break: exploiting an RNA-seq splice junction algorithm to discover mitochondrial DNA deletion breakpoints and analyses of psychiatric disorders.
Published in:
Nucleic Acids Research, 2019, v. 47, n. 10, p. e59, doi. 10.1093/nar/gkz164
By:
- Hjelm, Brooke E;
- Rollins, Brandi;
- Morgan, Ling;
- Sequeira, Adolfo;
- Mamdani, Firoza;
- Pereira, Filipe;
- Damas, Joana;
- Webb, Michelle G;
- Weber, Matthieu D;
- Schatzberg, Alan F;
- Barchas, Jack D;
- Lee, Francis S;
- Akil, Huda;
- Watson, Stanley J;
- Myers, Richard M;
- Chao, Elizabeth C;
- Kimonis, Virginia;
- Thompson, Peter M;
- Bunney, William E;
- Vawter, Marquis P
Publication type:
Article
Reconstruction of the diapsid ancestral genome permits chromosome evolution tracing in avian and non-avian dinosaurs.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04267-9
By:
- O'Connor, Rebecca E.;
- Romanov, Michael N.;
- Kiazim, Lucas G.;
- Barrett, Paul M.;
- Farré, Marta;
- Damas, Joana;
- Ferguson-Smith, Malcolm;
- Valenzuela, Nicole;
- Larkin, Denis M.;
- Griffin, Darren K.
Publication type:
Article
Chromosome-level assembly reveals extensive rearrangement in saker falcon and budgerigar, but not ostrich, genomes.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1550-x
By:
- O'Connor, Rebecca E;
- Farré, Marta;
- Joseph, Sunitha;
- Damas, Joana;
- Kiazim, Lucas;
- Jennings, Rebecca;
- Bennett, Sophie;
- Slack, Eden A;
- Allanson, Emily;
- Larkin, Denis M;
- Griffin, Darren K
Publication type:
Article
Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1544-8
By:
- Damas, Joana;
- Kim, Jaebum;
- Farré, Marta;
- Griffin, Darren K;
- Larkin, Denis M
Publication type:
Article
Mitochondrial DNA Rearrangements in Health and Disease-A Comprehensive Study.
Published in:
Human Mutation, 2014, v. 35, n. 1, p. 1, doi. 10.1002/humu.22452
By:
- Damas, Joana;
- Samuels, David C.;
- Carneiro, João;
- Amorim, António;
- Pereira, Filipe
Publication type:
Article
syntenyPlotteR: a user-friendly R package to visualize genome synteny, ideal for both experienced and novice bioinformaticians.
Published in:
Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad161
By:
- Quigley, Sarah;
- Damas, Joana;
- Larkin, Denis M;
- Farré, Marta
Publication type:
Article
Association of G-quadruplex forming sequences with human mtDNA deletion breakpoints.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 677, doi. 10.1186/1471-2164-15-677
By:
- Dong, Dawei W;
- Pereira, Filipe;
- Barrett, Steven P;
- Kolesar, Jill E;
- Kajia Cao;
- Damas, Joana;
- Yatsunyk, Liliya A;
- Johnson, F Brad;
- Kaufman, Brett A
Publication type:
Article
Third Report on Chicken Genes and Chromosomes 2015.
Published in:
Cytogenetic & Genome Research, 2015, v. 145, n. 2, p. 78, doi. 10.1159/000430927
By:
- Schmid, Michael;
- Smith, Jacqueline;
- Burt, David W.;
- 1ken, Bronwen L.;
- 1ntin, Parker B.;
- 1rchibald, 1lan L.;
- 1shwell, Chris;
- Blackshear, Perry J.;
- Boschiero, Clarissa;
- Brown, C. Titus;
- Burgess, Shane C.;
- Cheng, Hans H.;
- Chow, William;
- Coble, Derrick J.;
- Cooksey, 1manda;
- Crooijmans, Richard P.M.1.;
- Damas, Joana;
- Davis, Richard V.N.;
- de Koning, Dirk-Jan;
- Delany, Mary E.
Publication type:
Article

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