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The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7
By:
- Diehl, Alexander D.;
- Meehan, Terrence F.;
- Bradford, Yvonne M.;
- Brush, Matthew H.;
- Dahdul, Wasila M.;
- Dougall, David S.;
- Yongqun He;
- Osumi-Sutherland, David;
- Ruttenberg, Alan;
- Sarntivijai, Sirarat;
- Van Slyke, Ceri E.;
- Vasilevsky, Nicole A.;
- Haendel, Melissa A.;
- Blake, Judith A.;
- Mungall, Christopher J.
Publication type:
Article
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
Published in:
Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21
By:
- Haendel, Melissa A.;
- Balhoff, James P.;
- Bastian, Frederic B.;
- Blackburn, David C.;
- Blake, Judith A.;
- Bradford, Yvonne;
- Comte, Aurelie;
- Dahdul, Wasila M.;
- Dececchi, Thomas A.;
- Druzinsky, Robert E.;
- Hayamizu, Terry F.;
- Ibrahim, Nizar;
- Lewis, Suzanna E.;
- Mabee, Paula M.;
- Niknejad, Anne;
- Robinson-Rechavi, Marc;
- Sereno, Paul C.;
- Mungall, Christopher J.
Publication type:
Article
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-34
By:
- Midford, Peter E.;
- Dececchi, Thomas Alex;
- Balhoff, James P.;
- Dahdul, Wasila M.;
- Ibrahim, Nizar;
- Lapp, Hilmar;
- Lundberg, John G.;
- Mabee, Paula M.;
- Sereno, Paul C.;
- Westerfield, Monte;
- Vision, Todd J.;
- Blackburn, David C.
Publication type:
Article
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-31
By:
- Segerdell, Erik;
- Ponferrada, Virgilio G.;
- James-Zorn, Christina;
- Burns, Kevin A.;
- Fortriede, Joshua D.;
- Dahdul, Wasila M.;
- Vize, Peter D.;
- Zorn, Aaron M.
Publication type:
Article
A Unified Anatomy Ontology of the Vertebrate Skeletal System.
Published in:
PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051070
By:
- Dahdul, Wasila M.;
- Balhoff, James P.;
- Blackburn, David C.;
- Diehl, Alexander D.;
- Haendel, Melissa A.;
- Hall, Brian K.;
- Lapp, Hilmar;
- Lundberg, John G.;
- Mungall, Christopher J.;
- Ringwald, Martin;
- Segerdell, Erik;
- Van Slyke, Ceri E.;
- Vickaryous, Matthew K.;
- Westerfield, Monte;
- Mabee, Paula M.
Publication type:
Article
Evolutionary Characters, Phenotypes and Ontologies : Curating Data from the Systematic Biology Literature.
Published in:
PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010708
By:
- Dahdul, Wasila M.;
- Balhoff, James P.;
- Engeman, Jeffrey;
- Grande, Terry;
- Hilton, Eric J.;
- Kothari, Cartik;
- Lapp, Hilmar;
- Lundberg, John G.;
- Midford, Peter E.;
- Vision, Todd J.;
- Westerfield, Monte;
- Mabee, Paula M.
Publication type:
Article
Phenex: Ontological Annotation of Phenotypic Diversity.
Published in:
PLoS ONE, 2010, v. 5, n. 5, p. 1, doi. 10.1371/journal.pone.0010500
By:
- Balhoff, James P.;
- Dahdul, Wasila M.;
- Kothari, Cartik R.;
- Lapp, Hilmar;
- Lundberg, John G.;
- Mabee, Paula;
- Midford, Peter E.;
- Westerfield, Monte;
- Vision, Todd J.
Publication type:
Article
rphenoscate: An R package for semantics‐aware evolutionary analyses of anatomical traits.
Published in:
Methods in Ecology & Evolution, 2023, v. 14, n. 10, p. 2531, doi. 10.1111/2041-210X.14210
By:
- Porto, Diego S.;
- Tarasov, Sergei;
- Charpentier, Caleb;
- Lapp, Hilmar;
- Balhoff, James P.;
- Vision, Todd J.;
- Dahdul, Wasila M.;
- Mabee, Paula M.;
- Uyeda, Josef
Publication type:
Article
Hierarchy‐guided neural network for species classification.
Published in:
Methods in Ecology & Evolution, 2022, v. 13, n. 3, p. 642, doi. 10.1111/2041-210X.13768
By:
- Elhamod, Mohannad;
- Diamond, Kelly M.;
- Maga, A. Murat;
- Bakis, Yasin;
- Bart, Henry L.;
- Mabee, Paula;
- Dahdul, Wasila;
- Leipzig, Jeremy;
- Greenberg, Jane;
- Avants, Brian;
- Karpatne, Anuj
Publication type:
Article
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay110
By:
- Dahdul, Wasila;
- Manda, Prashanti;
- Cui, Hong;
- Balhoff, James P;
- Dececchi, T Alexander;
- Ibrahim, Nizar;
- Lapp, Hilmar;
- Vision, Todd;
- Mabee, Paula M
Publication type:
Article
Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy.
Published in:
Database: The Journal of Biological Databases & Curation, 2015, v. 2015, p. 1, doi. 10.1093/database/bav040
By:
- Dahdul, Wasila;
- Dececchi, T. Alexander;
- Ibrahim, Nizar;
- Lapp, Hilmar;
- Mabee, Paula
Publication type:
Article
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas056
By:
- Arighi, Cecilia N.;
- Carterette, Ben;
- Cohen, K. Bretonnel;
- Krallinger, Martin;
- Wilbur, W. John;
- Fey, Petra;
- Dodson, Robert;
- Cooper, Laurel;
- Van Slyke, Ceri E.;
- Dahdul, Wasila;
- Mabee, Paula;
- Donghui Li;
- Harris, Bethany;
- Gillespie, Marc;
- Jimenez, Silvia;
- Roberts, Phoebe;
- Matthews, Lisa;
- Becker, Kevin;
- Drabkin, Harold;
- Bello, Susan
Publication type:
Article
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes.
Published in:
Molecular Biology & Evolution, 2016, v. 33, n. 1, p. 13, doi. 10.1093/molbev/msv223
By:
- Edmunds, Richard C.;
- Baofeng Su;
- Balhoff, James P.;
- Eames, B. Frank;
- Dahdul, Wasila M.;
- Lapp, Hilmar;
- Lundberg, John G.;
- Vision, Todd J.;
- Dunham, Rex A.;
- Mabee, Paula M.;
- Westerfield, Monte
Publication type:
Article
Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies.
Published in:
Systematic Biology, 2022, v. 71, n. 6, p. 1290, doi. 10.1093/sysbio/syac022
By:
- Porto, Diego S;
- Dahdul, Wasila M;
- Lapp, Hilmar;
- Balhoff, James P;
- Vision, Todd J;
- Mabee, Paula M;
- Uyeda, Josef
Publication type:
Article
A Logical Model of Homology for Comparative Biology.
Published in:
Systematic Biology, 2020, v. 69, n. 2, p. 345, doi. 10.1093/sysbio/syz067
By:
- Mabee, Paula M;
- Balhoff, James P;
- Dahdul, Wasila M;
- Lapp, Hilmar;
- Mungall, Christopher J;
- Vision, Todd J
Publication type:
Article
The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age.
Published in:
Systematic Biology, 2010, v. 59, n. 4, p. 369, doi. 10.1093/sysbio/syq013
By:
- DAHDUL, WASILA M.;
- LUNDBERG, JOHN G.;
- MIDFORD, PETER E.;
- BALHOFF, JAMES P.;
- LAPP, HILMAR;
- VISION, TODD J.;
- HAENDEL, MELISSA A.;
- WESTERFIELD, MONTE;
- MABEE, PAULA M.
Publication type:
Article
Finding Our Way through Phenotypes.
Published in:
2015
By:
- Deans, Andrew R.;
- Lewis, Suzanna E.;
- Huala, Eva;
- Anzaldo, Salvatore S.;
- Ashburner, Michael;
- Balhoff, James P.;
- Blackburn, David C.;
- Blake, Judith A.;
- Burleigh, J. Gordon;
- Chanet, Bruno;
- Cooper, Laurel D.;
- Courtot, Mélanie;
- Csösz, Sándor;
- Cui, Hong;
- Dahdul, Wasila;
- Das, Sandip;
- Dececchi, T. Alexander;
- Dettai, Agnes;
- Diogo, Rui;
- Druzinsky, Robert E.
Publication type:
Opinion
Phenomap - Challenges and Successes in Bringing Together Multiple Data Projects to Build New Visualizations of Phenotypic Information and Specimen Records.
Published in:
2018
By:
- Collins, Matthew;
- Tarvin, Rebecca;
- Kandziora, Martha;
- Dahdul, Wasila;
- Paul, Deborah
Publication type:
Abstract

Found: 18