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Pharmacotherapy for Generalized Anxiety Disorder.
Published in:
Psychiatric Annals, 2011, v. 41, n. 2, p. 95, doi. 10.3928/00485713-20110203-08
By:
- Katzman, Martin A.;
- Copeland, Alex;
- Klassen, Larry J.;
- Chokka, Pratap;
- Brawman-Mintzer, Olga
Publication type:
Article
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0287-z
By:
- Sevim, Volkan;
- Lee, Juna;
- Egan, Robert;
- Clum, Alicia;
- Hundley, Hope;
- Lee, Janey;
- Everroad, R. Craig;
- Detweiler, Angela M.;
- Bebout, Brad M.;
- Pett-Ridge, Jennifer;
- Göker, Markus;
- Murray, Alison E.;
- Lindemann, Stephen R.;
- Klenk, Hans-Peter;
- O'Malley, Ronan;
- Zane, Matthew;
- Cheng, Jan-Fang;
- Copeland, Alex;
- Daum, Christopher;
- Singer, Esther
Publication type:
Article
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3
By:
- Högfors-Rönnholm, Eva;
- Lopez-Fernandez, Margarita;
- Christel, Stephan;
- Brambilla, Diego;
- Huntemann, Marcel;
- Clum, Alicia;
- Foster, Brian;
- Foster, Bryce;
- Roux, Simon;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Copeland, Alex;
- Chen, I-Min A.;
- Ivanova, Natalia N.;
- Kyrpides, Nikos C.;
- Harmon-Smith, Miranda;
- Eloe-Fadrosh, Emiley A.
Publication type:
Article
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2018, v. 36, n. 7, p. 660, doi. 10.1038/nbt0718-660a
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2018, v. 36, n. 2, p. 196, doi. 10.1038/nbt0218-196a
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Published in:
Nature Biotechnology, 2017, v. 35, n. 8, p. 725, doi. 10.1038/nbt.3893
By:
- Bowers, Robert M;
- Kyrpides, Nikos C;
- Stepanauskas, Ramunas;
- Harmon-Smith, Miranda;
- Doud, Devin;
- Reddy, T B K;
- Schulz, Frederik;
- Jarett, Jessica;
- Rivers, Adam R;
- Eloe-Fadrosh, Emiley A;
- Tringe, Susannah G;
- Ivanova, Natalia N;
- Copeland, Alex;
- Clum, Alicia;
- Becraft, Eric D;
- Malmstrom, Rex R;
- Birren, Bruce;
- Podar, Mircea;
- Bork, Peer;
- Weinstock, George M
Publication type:
Article
High-resolution metagenomics targets specific functional types in complex microbial communities.
Published in:
Nature Biotechnology, 2008, v. 26, n. 9, p. 1029, doi. 10.1038/nbt.1488
By:
- Kalyuzhnaya, Marina G;
- Lapidus, Alla;
- Ivanova, Natalia;
- Copeland, Alex C;
- McHardy, Alice C;
- Szeto, Ernest;
- Salamov, Asaf;
- Grigoriev, Igor V;
- Suciu, Dominic;
- Levine, Samuel R;
- Markowitz, Victor M;
- Rigoutsos, Isidore;
- Tringe, Susannah G;
- Bruce, David C;
- Richardson, Paul M;
- Lidstrom, Mary E;
- Chistoserdova, Ludmila
Publication type:
Article
Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 1, p. 122, doi. 10.1038/ismej.2010.125
By:
- Lykidis, Athanasios;
- Chen, Chia-Lung;
- Tringe, Susannah G;
- McHardy, Alice C;
- Copeland, Alex;
- Kyrpides, Nikos C;
- Hugenholtz, Philip;
- Macarie, Hervé;
- Olmos, Alejandro;
- Monroy, Oscar;
- Liu, Wen-Tso
Publication type:
Article
Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.
Published in:
Nature Methods, 2013, v. 10, n. 6, p. 563, doi. 10.1038/nmeth.2474
By:
- Chin, Chen-Shan;
- Alexander, David H;
- Marks, Patrick;
- Klammer, Aaron A;
- Drake, James;
- Heiner, Cheryl;
- Clum, Alicia;
- Copeland, Alex;
- Huddleston, John;
- Eichler, Evan E;
- Turner, Stephen W;
- Korlach, Jonas
Publication type:
Article
Rapid arrayed filter production using the `ORCA' robot.
Published in:
Nature, 1994, v. 369, n. 6479, p. 421, doi. 10.1038/369421a0
By:
- Copeland, Alex;
- Lennon, Greg
Publication type:
Article
High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775, a plant pathogen of French bean pods.
Published in:
Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0127-5
By:
- Aizenberg-Gershtein, Yana;
- Izhaki, Ido;
- Lapidus, Alla;
- Copeland, Alex;
- Reddy, TBK;
- Huntemann, Marcel;
- Pillay, Manoj;
- Markowitz, Victor;
- Göker, Markus;
- Woyke, Tanja;
- Klenk, Hans-Peter;
- Kyrpides, Nikos;
- Halpern, Malka
Publication type:
Article
High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea.
Published in:
Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
By:
- Ntougias, Spyridon;
- Lapidus, Alla;
- Copeland, Alex;
- Reddy, T. B. K.;
- Pati, Amrita;
- Ivanova, Natalia N.;
- Markowitz, Victor M.;
- Klenk, Hans-Peter;
- Woyke, Tanja;
- Fasseas, Constantinos;
- Kyrpides, Nikos C.;
- Zervakis, Georgios I.
Publication type:
Article
Complete genome sequence of Anabaena variabilis ATCC 29413.
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 562, doi. 10.4056/sigs.3899418
By:
- Thiel, Teresa;
- Pratte, Brenda;
- Zhong, Jinshun;
- Goodwin, Lynne;
- Copeland, Alex;
- Lucas, Susan;
- Han, Cliff;
- Pitluck, Sam;
- Land, Miriam;
- Kyrpides, Nikos;
- Woyke, Tanja
Publication type:
Article
Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271).
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 462, doi. 10.4056/sigs.4458283
By:
- Nandasena, Kemanthi;
- Yates, Ron;
- Tiwari, Ravi;
- O'Hara, Graham;
- Howieson, John;
- Ninawi, Mohamed;
- Chertkov, Olga;
- Detter, Chris;
- Tapia, Roxanne;
- Han, Shunseng;
- Woyke, Tanja;
- Pitluck, Sam;
- Nolan, Matt;
- Land, Miriam;
- Liolios, Konstantinos;
- Pati, Amrita;
- Copeland, Alex;
- Kyrpides, Nikos;
- Ivanova, Natalia;
- Goodwin, Lynne
Publication type:
Article
Complete Genome sequence of Burkholderia phymatum STM815, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species.
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 763, doi. 10.4056/sigs.4861021
By:
- Moulin, Lionel;
- Klonowska, Agnieszka;
- Caroline, Bournaud;
- Booth, Kristina;
- Vriezen, Jan;
- Melkonian, Rémy;
- James, Euan;
- Young, J.;
- Bena, Gilles;
- Hauser, Loren;
- Land, Miriam;
- Kyrpides, Nikos;
- Bruce, David;
- Chain, Patrick;
- Copeland, Alex;
- Pitluck, Sam;
- Woyke, Tanja;
- Lizotte-Waniewski, Michelle;
- Bristow, Jim;
- Riley, Margaret
Publication type:
Article
Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1259, doi. 10.4056/sigs.5029016
By:
- Hawley, Erik;
- Piao, Hailan;
- Scott, Nicole;
- Malfatti, Stephanie;
- Pagani, Ioanna;
- Huntemann, Marcel;
- Chen, Amy;
- Glavina del Rio, Tijana;
- Foster, Brian;
- Copeland, Alex;
- Jansson, Janet;
- Pati, Amrita;
- Tringe, Susannah;
- Gilbert, Jack;
- Lorenson, Thomas;
- Hess, Matthias
Publication type:
Article
Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075.
Published in:
Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 294, doi. 10.4056/sigs.4538264
By:
- Reeve, Wayne;
- Nandasena, Kemanthi;
- Yates, Ron;
- Tiwari, Ravi;
- O'Hara, Graham;
- Ninawi, Mohamed;
- Chertkov, Olga;
- Goodwin, Lynne;
- Bruce, David;
- Detter, Chris;
- Tapia, Roxanne;
- Han, Shunseng;
- Woyke, Tanja;
- Pitluck, Sam;
- Nolan, Matt;
- Land, Miriam;
- Copeland, Alex;
- Liolios, Konstantinos;
- Pati, Amrita;
- Mavromatis, Konstantinos
Publication type:
Article
Complete genome sequence of Mesorhizobium australicum type strain (WSM2073).
Published in:
Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 410, doi. 10.4056/sigs.4568282
By:
- Reeve, Wayne;
- Nandasena, Kemanthi;
- Yates, Ron;
- Tiwari, Ravi;
- O'Hara, Graham;
- Ninawi, Mohamed;
- Gu, Wei;
- Goodwin, Lynne;
- Detter, Chris;
- Tapia, Roxanne;
- Han, Cliff;
- Copeland, Alex;
- Liolios, Konstantinos;
- Chen, Amy;
- Markowitz, Victor;
- Pati, Amrita;
- Mavromatis, Konstantinos;
- Woyke, Tanja;
- Kyrpides, Nikos;
- Ivanova, Natalia
Publication type:
Article
Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134).
Published in:
Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 28, doi. 10.4056/sigs.4207886
By:
- Meier-Kolthoff, Jan;
- Lu, Megan;
- Huntemann, Marcel;
- Lucas, Susan;
- Lapidus, Alla;
- Copeland, Alex;
- Pitluck, Sam;
- Goodwin, Lynne;
- Han, Cliff;
- Tapia, Roxanne;
- Pötter, Gabriele;
- Land, Miriam;
- Ivanova, Natalia;
- Rohde, Manfred;
- Göker, Markus;
- Detter, John;
- Woyke, Tanja;
- Kyrpides, Nikos;
- Klenk, Hans-Peter
Publication type:
Article
Permanent draft genome sequence of Comamonas testosteroni KF-1.
Published in:
Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 239, doi. 10.4056/sigs.3847890
By:
- Weiss, Michael;
- Kesberg, Anna;
- LaButti, Kurt;
- Pitluck, Sam;
- Bruce, David;
- Hauser, Loren;
- Copeland, Alex;
- Woyke, Tanja;
- Lowry, Stephen;
- Lucas, Susan;
- Land, Miriam;
- Goodwin, Lynne;
- Kjelleberg, Staffan;
- Cook, Alasdair;
- Buhmann, Matthias;
- Thomas, Torsten;
- Schleheck, David
Publication type:
Article
Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659
By:
- Spring, Stefan;
- Visser, Michael;
- Lu, Megan;
- Copeland, Alex;
- Lapidus, Alla;
- Lucas, Susan;
- Jan-Fang Cheng;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne A.;
- Pitluck, Sam;
- Ivanova, Natalia;
- Land, Miriam;
- Hauser, Loren;
- Larimer, Frank;
- Rohde, Manfred;
- Göker, Markus;
- Detter, John C.;
- Kyrpides, Nikos C.;
- Woyke, Tanja
Publication type:
Article
Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T).
Published in:
2012
By:
- Kappler, Ulrike;
- Davenport, Karen;
- Beatson, Scott;
- Lucas, Susan;
- Lapidus, Alla;
- Copeland, Alex;
- Berry, Kerrie W.;
- Del Rio, Tijana Glavina;
- Hammon, Nancy;
- Dalin, Eileen;
- Tice, Hope;
- Pitluck, Sam;
- Richardson, Paul;
- Bruce, David;
- Goodwin, Lynne A.;
- Han, Cliff;
- Tapia, Roxanne;
- Detter, John C.;
- Chang, Yun-juan;
- Jeffries, Cynthia D.
Publication type:
Art Reproduction
Complete genome sequence of Marinomonas posidonica type strain (IVIA-Po-181T).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 31, doi. 10.4056/sigs.2976373
By:
- Lucas-Elío, Patricia;
- Goodwin, Lynne;
- Woyke, Tanja;
- Pitluck, Sam;
- Nolan, Matt;
- Kyrpides, Nikos C.;
- Detter, Janine C.;
- Copeland, Alex;
- Megan Lu;
- Bruce, David;
- Detter, Chris;
- Tapia, Roxanne;
- Shunsheng Han;
- Land, Miriam L.;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Johnston, Andrew W. B.;
- Sanchez-Amat, Antonio
Publication type:
Article
The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation.
Published in:
PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0048837
By:
- Mavromatis, Konstantinos;
- Land, Miriam L.;
- Brettin, Thomas S.;
- Quest, Daniel J.;
- Copeland, Alex;
- Clum, Alicia;
- Goodwin, Lynne;
- Woyke, Tanja;
- Lapidus, Alla;
- Klenk, Hans Peter;
- Cottingham, Robert W.;
- Kyrpides, Nikos C.
Publication type:
Article
Generation of Long Insert Pairs Using a Cre-LoxP Inverse PCR Approach.
Published in:
PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0029437
By:
- Ze Peng;
- Zhiying Zhao;
- Nandita Nath;
- Froula, Jeff L.;
- Alicia Clum;
- Tao Zhang;
- Jan-fang Cheng;
- Copeland, Alex C.;
- Pennacchio, Len A.;
- Feng Chen
Publication type:
Article
One Bacterial Cell, One Complete Genome.
Published in:
PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0010314
By:
- Woyke, Tanja;
- Tighe, Damon;
- Mavromatis, Konstantinos;
- Clum, Alicia;
- Copeland, Alex;
- Schackwitz, Wendy;
- Lapidus, Alla;
- Dongying Wu;
- McCutcheon, John P.;
- McDonald, Bradon R.;
- Moran, Nancy A.;
- Bristow, James;
- Jan-Fang Cheng
Publication type:
Article
Assembling the Marine Metagenome, One Cell at a Time.
Published in:
PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005299
By:
- Woyke, Tanja;
- Xie, Gary;
- Copeland, Alex;
- González, José M.;
- Han, Cliff;
- Kiss, Hajnalka;
- Saw, Jimmy H.;
- Senin, Pavel;
- Chi Yang;
- Chatterji, Sourav;
- Jan-Fang Cheng;
- Eisen, Jonathan A.;
- Sieracki, Michael E.;
- Stepanauskas, Ramunas
Publication type:
Article
Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3286-x
By:
- Gregory, Ann C.;
- Solonenko, Sergei A.;
- Ignacio-Espinoza, J. Cesar;
- LaButti, Kurt;
- Copeland, Alex;
- Sudek, Sebastian;
- Maitland, Ashley;
- Chittick, Lauren;
- dos Santos, Filipa;
- Weitz, Joshua S.;
- Worden, Alexandra Z.;
- Woyke, Tanja;
- Sullivan, Matthew B.
Publication type:
Article
Effectiveness of Vitamin D in the Treatment of Mood Disorders: A Literature Review.
Published in:
Journal of Orthomolecular Medicine, 2011, v. 26, n. 3, p. 127
By:
- Khamba, Baljit K.;
- Aucoin, Monique;
- Tsirgielis, Dina;
- Copeland, Alex;
- Vermani, Monica;
- Cameron, Catherine;
- Szpindel, Isaac;
- Laidlaw, Bob;
- Epstein, Irvin;
- Katzman, Martin
Publication type:
Article
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0132-4
By:
- Nowinski, Brent;
- Smith, Christa B.;
- Thomas, Courtney M.;
- Esson, Kaitlin;
- Marin, Roman;
- Preston, Christina M.;
- Birch, James M.;
- Scholin, Christopher A.;
- Huntemann, Marcel;
- Clum, Alicia;
- Foster, Brian;
- Foster, Bryce;
- Roux, Simon;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Copeland, Alex;
- Chen, I.-Min A.
Publication type:
Article
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot.
Published in:
Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0141-3
By:
- Camargo, Antonio Pedro;
- de Souza, Rafael Soares Correa;
- de Britto Costa, Patrícia;
- Gerhardt, Isabel Rodrigues;
- Dante, Ricardo Augusto;
- Teodoro, Grazielle Sales;
- Abrahão, Anna;
- Lambers, Hans;
- Carazzolle, Marcelo Falsarella;
- Huntemann, Marcel;
- Clum, Alicia;
- Foster, Brian;
- Foster, Bryce;
- Roux, Simon;
- Palaniappan, Krishnaveni;
- Varghese, Neha;
- Mukherjee, Supratim;
- Reddy, T. B. K.;
- Daum, Chris;
- Copeland, Alex
Publication type:
Article
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.
Published in:
Nature Communications, 2016, v. 7, n. 9, p. 12662, doi. 10.1038/ncomms12662
By:
- Peter, Martina;
- Kohler, Annegret;
- Ohm, Robin A.;
- Kuo, Alan;
- Krützmann, Jennifer;
- Morin, Emmanuelle;
- Arend, Matthias;
- Barry, Kerrie W.;
- Binder, Manfred;
- Choi, Cindy;
- Clum, Alicia;
- Copeland, Alex;
- Grisel, Nadine;
- Haridas, Sajeet;
- Kipfer, Tabea;
- LaButti, Kurt;
- Lindquist, Erika;
- Lipzen, Anna;
- Maire, Renaud;
- Meier, Barbara
Publication type:
Article
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi.
Published in:
PLoS Pathogens, 2012, v. 8, n. 12, p. 1, doi. 10.1371/journal.ppat.1003037
By:
- Ohm, Robin A.;
- Feau, Nicolas;
- Henrissat, Bernard;
- Schoch, Conrad L.;
- Horwitz, Benjamin A.;
- Barry, Kerrie W.;
- Condon, Bradford J.;
- Copeland, Alex C.;
- Dhillon, Braham;
- Glaser, Fabian;
- Hesse, Cedar N.;
- Kosti, Idit;
- LaButti, Kurt;
- Lindquist, Erika A.;
- Lucas, Susan;
- Salamov, Asaf A.;
- Bradshaw, Rosie E.;
- Ciuffetti, Lynda;
- Hamelin, Richard C.;
- Kema, Gert H. J.
Publication type:
Article
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi.
Published in:
PLoS Pathogens, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.ppat.1003037
By:
- Ohm, Robin A.;
- Feau, Nicolas;
- Henrissat, Bernard;
- Schoch, Conrad L.;
- Horwitz, Benjamin A.;
- Barry, Kerrie W.;
- Condon, Bradford J.;
- Copeland, Alex C.;
- Dhillon, Braham;
- Glaser, Fabian;
- Hesse, Cedar N.;
- Kosti, Idit;
- LaButti, Kurt;
- Lindquist, Erika A.;
- Lucas, Susan;
- Salamov, Asaf A.;
- Bradshaw, Rosie E.;
- Ciuffetti, Lynda;
- Hamelin, Richard C.;
- Kema, Gert H. J.
Publication type:
Article
Terabase-scale metagenome coassembly with MetaHipMer.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-67416-5
By:
- Hofmeyr, Steven;
- Egan, Rob;
- Georganas, Evangelos;
- Copeland, Alex C.;
- Riley, Robert;
- Clum, Alicia;
- Eloe-Fadrosh, Emiley;
- Roux, Simon;
- Goltsman, Eugene;
- Buluç, Aydın;
- Rokhsar, Daniel;
- Oliker, Leonid;
- Yelick, Katherine
Publication type:
Article
Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems.
Published in:
New Phytologist, 2024, v. 242, n. 4, p. 1676, doi. 10.1111/nph.19471
By:
- Auer, Lucas;
- Buée, Marc;
- Fauchery, Laure;
- Lombard, Vincent;
- Barry, Kerry W.;
- Clum, Alicia;
- Copeland, Alex;
- Daum, Chris;
- Foster, Brian;
- LaButti, Kurt;
- Singan, Vasanth;
- Yoshinaga, Yuko;
- Martineau, Christine;
- Alfaro, Manuel;
- Castillo, Federico J.;
- Imbert, J. Bosco;
- Ramírez, Lucia;
- Castanera, Raúl;
- Pisabarro, Antonio G.;
- Finlay, Roger
Publication type:
Article
Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01775
By:
- Mackelprang, Rachel;
- Grube, Alyssa M.;
- Lamendella, Regina;
- Jesus, Ederson da C.;
- Copeland, Alex;
- Liang, Chao;
- Jackson, Randall D.;
- Rice, Charles W.;
- Kapucija, Stefanie;
- Parsa, Bayan;
- Tringe, Susannah G.;
- Tiedje, James M.;
- Jansson, Janet K.
Publication type:
Article
Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.
Published in:
Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0275-x
By:
- Dong Han Choi;
- Gwang II Jang;
- Lapidus, Alla;
- Copeland, Alex;
- Reddy, T. B. K.;
- Mukherjee, Supratim;
- Huntemann, Marcel;
- Varghese, Neha;
- Ivanova, Natalia;
- Pillay, Manoj;
- Tindall, Brian J.;
- Göker, Markus;
- Woyke, Tanja;
- Klenk, Hans-Peter;
- Kyrpides, Nikos C.;
- Byung Cheol Cho
Publication type:
Article
Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.
Published in:
Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0194-2
By:
- Anderson, Iain J.;
- DasSarma, Priya;
- Lucas, Susan;
- Copeland, Alex;
- Lapidus, Alla;
- Del Rio, Tijana Glavina;
- Tice, Hope;
- Dalin, Eileen;
- Bruce, David C.;
- Goodwin, Lynne;
- Pitluck, Sam;
- Sims, David;
- Brettin, Thomas S.;
- Detter, John C.;
- Han, Cliff S.;
- Larimer, Frank;
- Hauser, Loren;
- Land, Miriam;
- Ivanova, Natalia;
- Richardson, Paul
Publication type:
Article
High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T.
Published in:
Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
By:
- Tashkandy, Nisreen;
- Sabban, Sari;
- Fakieh, Mohammad;
- Meier-Kolthoff, Jan P.;
- Sixing Huang;
- Tindall, Brian J.;
- Rohde, Manfred;
- Baeshen, Mohammed N.;
- Baeshen, Nabih A.;
- Lapidus, Alla;
- Copeland, Alex;
- Pillay, Manoj;
- Reddy, T. B. K.;
- Huntemann, Marcel;
- Pati, Amrita;
- Ivanova, Natalia;
- Markowitz, Victor;
- Woyke, Tanja;
- Göker, Markus;
- Klenk, Hans-Peter
Publication type:
Article
Omega: an Overlap-graph de novo Assembler for Metagenomics.
Published in:
Bioinformatics, 2014, v. 30, n. 19, p. 2717, doi. 10.1093/bioinformatics/btu395
By:
- Haider, Bahlul;
- Ahn, Tae-Hyuk;
- Bushnell, Brian;
- Chai, Juanjuan;
- Copeland, Alex;
- Pan, Chongle
Publication type:
Article

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