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TB1: from domestication gene to tool for many trades.
- Published in:
- Journal of Experimental Botany, 2020, v. 71, n. 16, p. 4621, doi. 10.1093/jxb/eraa308
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- Publication type:
- Article
Harnessing Novel Diversity From Landraces to Improve an Elite Barley Variety.
- Published in:
- Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2019.00434
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- Publication type:
- Article
RSAT 2018: regulatory sequence analysis tools 20th anniversary.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. W1, p. W209, doi. 10.1093/nar/gky317
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- Publication type:
- Article
RSAT 2015: Regulatory Sequence Analysis Tools.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W50, doi. 10.1093/nar/gkv362
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- Article
The twilight zone of cis element alignments.
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- Nucleic Acids Research, 2013, v. 41, n. 3, p. 1438, doi. 10.1093/nar/gks1301
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- Publication type:
- Article
Dissecting the expression patterns of transcription factors across conditions using an integrated network-based approach.
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- Nucleic Acids Research, 2010, v. 38, n. 20, p. 6841, doi. 10.1093/nar/gkq612
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- Publication type:
- Article
3D-footprint: a database for the structural analysis of protein–DNA complexes.
- Published in:
- Nucleic Acids Research, 2010, v. 38, p. D91, doi. 10.1093/nar/gkp781
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- Publication type:
- Article
primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W95, doi. 10.1093/nar/gkp377
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- Publication type:
- Article
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
- Published in:
- Nucleic Acids Research, 2008, v. 36, p. D120
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- Publication type:
- Article
OPCML at 11q25 is epigenetically inactivated and has tumor-suppressor function in epithelial ovarian cancer.
- Published in:
- Nature Genetics, 2003, v. 34, n. 3, p. 337, doi. 10.1038/ng1183
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- Publication type:
- Article
Fine-tuning of the flowering time control in winter barley: the importance of HvOS2 and HvVRN2 in non-inductive conditions.
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- BMC Plant Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12870-019-1727-9
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- Publication type:
- Article
MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle.
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- GigaScience, 2017, v. 6, n. 11, p. 1, doi. 10.1093/gigascience/gix096
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- Publication type:
- Article
Tracking the ancestry of known and 'ghost' homeologous subgenomes in model grass Brachypodium polyploids.
- Published in:
- Plant Journal, 2022, v. 109, n. 6, p. 1535, doi. 10.1111/tpj.15650
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- Publication type:
- Article
Genetic association with high‐resolution climate data reveals selection footprints in the genomes of barley landraces across the Iberian Peninsula.
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- Molecular Ecology, 2019, v. 28, n. 8, p. 1994, doi. 10.1111/mec.15009
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- Publication type:
- Article
K‐mer counting and curated libraries drive efficient annotation of repeats in plant genomes.
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- Plant Genome, 2021, v. 14, n. 3, p. 1, doi. 10.1002/tpg2.20143
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- Publication type:
- Article
Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast.
- Published in:
- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141044
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- Publication type:
- Article
Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli.
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- PLoS ONE, 2009, v. 4, n. 10, p. 1, doi. 10.1371/journal.pone.0007526
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- Publication type:
- Article
Comparison of DNA binding across protein superfamilies.
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- Proteins, 2010, v. 78, n. 1, p. 52, doi. 10.1002/prot.22525
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- Publication type:
- Article
An efficient conformational sampling method for homology modeling.
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- Proteins, 2008, v. 71, n. 1, p. 175, doi. 10.1002/prot.21672
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- Publication type:
- Article
Novel use of a genetic algorithm for protein structure prediction: Searching template and sequence alignment space.
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- Proteins, 2003, v. 53, n. S6, p. 424, doi. 10.1002/prot.10549
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- Publication type:
- Article
Protein disorder in plants: a view from the chloroplast.
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- BMC Plant Biology, 2012, v. 12, n. 1, p. 165, doi. 10.1186/1471-2229-12-165
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- Publication type:
- Article
Pan-genome association study of Mycobacterium tuberculosis lineage-4 revealed specific genes related to the high and low prevalence of the disease in patients from the North-Eastern area of Medellín, Colombia.
- Published in:
- Frontiers in Microbiology, 2023, v. 13, p. 1, doi. 10.3389/fmicb.2022.1076797
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- Publication type:
- Article
OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
- Published in:
- Plant Molecular Biology, 2013, v. 82, n. 4-5, p. 439, doi. 10.1007/s11103-013-0073-9
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- Publication type:
- Article
Fine mapping of the <i>Rrs1</i> resistance locus against scald in two large populations derived from Spanish barley landraces.
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- Theoretical & Applied Genetics, 2013, v. 126, n. 12, p. 3091, doi. 10.1007/s00122-013-2196-4
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- Article
HvFT1 ( VrnH3) drives latitudinal adaptation in Spanish barleys.
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- Theoretical & Applied Genetics, 2011, v. 122, n. 7, p. 1293, doi. 10.1007/s00122-011-1531-x
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- Publication type:
- Article
Large Differences in Gene Expression Responses to Drought and Heat Stress between Elite Barley Cultivar Scarlett and a Spanish Landrace.
- Published in:
- Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00647
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- Publication type:
- Article
Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species.
- Published in:
- Frontiers in Plant Science, 2017, v. 8, p. 1, doi. 10.3389/fpls.2017.00184
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- Publication type:
- Article
Transcriptional Responses in Root and Leaf of Prunus persica under Drought Stress Using RNA Sequencing.
- Published in:
- Frontiers in Plant Science, 2016, v. 7, p. 1, doi. 10.3389/fpls.2016.01715
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- Publication type:
- Article
Loss of neuronal 3D chromatin organization causes transcriptional and behavioural deficits related to serotonergic dysfunction.
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- Nature Communications, 2014, v. 5, n. 7, p. 4450, doi. 10.1038/ncomms5450
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- Article
GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03071-z
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- Article
Mycobacterium tuberculosis Complex Exhibits Lineage-Specific Variations Affecting Protein Ductility and Epitope Recognition.
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- Genome Biology & Evolution, 2016, v. 8, n. 12, p. 3751, doi. 10.1093/gbe/evw279
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- Article
Evolution of Protein Ductility in Duplicated Genes of Plants.
- Published in:
- Frontiers in Plant Science, 2018, p. N.PAG, doi. 10.3389/fpls.2018.01216
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- Publication type:
- Article
GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus Stenotrophomonas.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00771
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- Article
In Vivo Chromatin Targets of the Transcription Factor Yin Yang 2 in Trophoblast Stem Cells.
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- PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0154268
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- Publication type:
- Article
Resequencing theVrs1 gene in Spanish barley landraces revealed reversion of six-rowed to two-rowed spike.
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- Molecular Breeding, 2018, v. 38, n. 5, p. 1, doi. 10.1007/s11032-018-0816-z
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- Article
BARLEYMAP: physical and genetic mapping of nucleotide sequences and annotation of surrounding loci in barley.
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- Molecular Breeding, 2015, v. 35, n. 1, p. 1, doi. 10.1007/s11032-015-0253-1
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- Publication type:
- Article
Selection footprints in barley breeding lines detected by combining genotyping-by-sequencing with reference genome information.
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- Molecular Breeding, 2015, v. 35, n. 1, p. 1, doi. 10.1007/s11032-015-0194-8
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- Publication type:
- Article
TFmodeller: comparative modelling of protein DNA complexes.
- Published in:
- Bioinformatics, 2007, v. 23, n. 13, p. 1694, doi. 10.1093/bioinformatics/btm148
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- Publication type:
- Article
Patterns of pan-genome occupancy and gene coexpression under water-deficit in Brachypodium distachyon.
- Published in:
- Molecular Ecology, 2022, v. 31, n. 20, p. 5285, doi. 10.1111/mec.16661
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- Publication type:
- Article
RSAT 2022: regulatory sequence analysis tools.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. W1, p. W670, doi. 10.1093/nar/gkac312
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- Publication type:
- Article
Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. D1, p. D765, doi. 10.1093/nar/gkab889
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- Publication type:
- Article
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.
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- Nucleic Acids Research, 2022, v. 50, n. D1, p. D996, doi. 10.1093/nar/gkab1007
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- Publication type:
- Article
Ensembl Genomes 2020—enabling non-vertebrate genomic research.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D689, doi. 10.1093/nar/gkz890
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- Publication type:
- Article
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02292-8
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- Publication type:
- Article
Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example.
- Published in:
- Plant Physiology, 2021, v. 185, n. 3, p. 1242, doi. 10.1093/plphys/kiaa091
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- Article
Comparative Genomics, Evolution, and Drought-Induced Expression of Dehydrin Genes in Model Brachypodium Grasses.
- Published in:
- Plants (2223-7747), 2021, v. 10, n. 12, p. 2664, doi. 10.3390/plants10122664
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- Publication type:
- Article
Comparative plastome genomics and phylogenomics of <italic>Brachypodium</italic>: flowering time signatures, introgression and recombination in recently diverged ecotypes.
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- 2018
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- Publication type:
- Abstract
Genetic Diversity, Population Structure and Linkage Disequilibrium Assessment among International Sunflower Breeding Collections.
- Published in:
- Genes, 2020, v. 11, n. 3, p. 283, doi. 10.3390/genes11030283
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- Publication type:
- Article
Integrating bioinformatic resources to predict transcription factors interacting with cis-sequences conserved in co-regulated genes.
- Published in:
- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-317
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- Publication type:
- Article
Genetic recombination is associated with intrinsic disorder in plant proteomes.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-772
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- Publication type:
- Article