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Mechanical signatures of human colon cancers.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-16669-3
By:
- Lopez-Crapez, Evelyne;
- Costa, Luca;
- Tosato, Guillaume;
- Ramos, Jeanne;
- Mazard, Thibault;
- Guiramand, Janique;
- Thierry, Alain;
- Colinge, Jacques;
- Milhiet, Pierre-Emmanuel;
- Bénistant, Christine
Publication type:
Article
The RNA-binding protein HuR/ELAVL1 regulates IFN-β mRNA abundance and the type I IFN response.
Published in:
European Journal of Immunology, 2015, v. 45, n. 5, p. 1500, doi. 10.1002/eji.201444979
By:
- Herdy, Barbara;
- Karonitsch, Thomas;
- Vladimer, Gregory I.;
- Tan, Chris S.H.;
- Stukalov, Alexey;
- Trefzer, Claudia;
- Bigenzahn, Johannes W.;
- Theil, Tamara;
- Holinka, Johannes;
- Kiener, Hans P.;
- Colinge, Jacques;
- Bennett, Keiryn L;
- Superti‐Furga, Giulio
Publication type:
Article
Initial characterization of the human central proteome.
Published in:
BMC Systems Biology, 2011, v. 5, n. 1, p. 17, doi. 10.1186/1752-0509-5-17
By:
- Burkard, Thomas R.;
- Planyavsky, Melanie;
- Kaupe, Ines;
- Breitwieser, Florian P.;
- Bürckstümmer, Tilmann;
- Bennett, Keiryn L.;
- Superti-Furga, Giulio;
- Colinge, Jacques
Publication type:
Article
The Prognostic Impact of the Aryl Hydrocarbon Receptor (AhR) in Primary Breast Cancer Depends on the Lymph Node Status.
Published in:
International Journal of Molecular Sciences, 2019, v. 20, n. 5, p. 1016, doi. 10.3390/ijms20051016
By:
- Jeschke, Udo;
- Zhang, Xi;
- Kuhn, Christina;
- Jalaguier, Stéphan;
- Colinge, Jacques;
- Pfender, Kristina;
- Mayr, Doris;
- Ditsch, Nina;
- Harbeck, Nadia;
- Mahner, Sven;
- Sixou, Sophie;
- Cavaillès, Vincent
Publication type:
Article
Circulating DNA reveals a specific and higher fragmentation of the Y chromosome.
Published in:
Human Genetics, 2023, v. 142, n. 11, p. 1603, doi. 10.1007/s00439-023-02600-x
By:
- Thierry, Alain R.;
- Sanchez, Cynthia;
- Colinge, Jacques;
- Pisareva, Ekaterina
Publication type:
Article
Proteome-wide drug and metabolite interaction mapping by thermal-stability profiling.
Published in:
Nature Methods, 2015, v. 12, n. 11, p. 1055, doi. 10.1038/nmeth.3590
By:
- Huber, Kilian V M;
- Olek, Karin M;
- Müller, André C;
- Tan, Chris Soon Heng;
- Bennett, Keiryn L;
- Colinge, Jacques;
- Superti-Furga, Giulio
Publication type:
Article
Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS.
Published in:
Nature Methods, 2013, v. 10, n. 4, p. 307, doi. 10.1038/nmeth.2400
By:
- Varjosalo, Markku;
- Sacco, Roberto;
- Stukalov, Alexey;
- van Drogen, Audrey;
- Planyavsky, Melanie;
- Hauri, Simon;
- Aebersold, Ruedi;
- Bennett, Keiryn L;
- Colinge, Jacques;
- Gstaiger, Matthias;
- Superti-Furga, Giulio
Publication type:
Article
Prediction of response to promising first-line chemotherapy in ovarian cancer patients with residual peritoneal tumors: practical biomarkers and robust multiplex models.
Published in:
International Journal of Clinical Oncology, 2024, v. 29, n. 9, p. 1334, doi. 10.1007/s10147-024-02552-w
By:
- Kawabata-Iwakawa, Reika;
- Iwasa, Norihiro;
- Satoh, Kenichi;
- Colinge, Jacques;
- Shimada, Muneaki;
- Takeuchi, Satoshi;
- Fujiwara, Hiroyuki;
- Eguchi, Hidetaka;
- Oishi, Tetsuro;
- Sugiyama, Toru;
- Suzuki, Mitsuaki;
- Hasegawa, Kosei;
- Fujiwara, Keiichi;
- Nishiyama, Masahiko
Publication type:
Article
Enabling population protein dynamics through Bayesian modeling.
Published in:
Bioinformatics, 2024, v. 40, n. 8, p. 1, doi. 10.1093/bioinformatics/btae484
By:
- Lehmann, Sylvain;
- Vialaret, Jérôme;
- Gabelle, Audrey;
- Bauchet, Luc;
- Villemin, Jean-Philippe;
- Hirtz, Christophe;
- Colinge, Jacques
Publication type:
Article
Modular response analysis reformulated as a multilinear regression problem.
Published in:
Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad166
By:
- Borg, Jean-Pierre;
- Colinge, Jacques;
- Ravel, Patrice
Publication type:
Article
Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions.
Published in:
Scientific Reports, 2016, p. 35284, doi. 10.1038/srep35284
By:
- Silva, Joana C.;
- Cornillot, Emmanuel;
- McCracken, Carrie;
- Usmani-Brown, Sahar;
- Dwivedi, Ankit;
- Ifeonu, Olukemi O.;
- Crabtree, Jonathan;
- Gotia, Hanzel T.;
- Virji, Azan Z.;
- Reynes, Christelle;
- Colinge, Jacques;
- Kumar, Vidya;
- Lawres, Lauren;
- Pazzi, Joseph E.;
- Pablo, Jozelyn V.;
- Hung, Chris;
- Brancato, Jana;
- Kumari, Priti;
- Orvis, Joshua;
- Tretina, Kyle
Publication type:
Article
A Target-Disease Network Model of Second-Generation BCR-ABL Inhibitor Action in Ph+ ALL.
Published in:
PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0077155
By:
- Rix, Uwe;
- Colinge, Jacques;
- Blatt, Katharina;
- Gridling, Manuela;
- Remsing Rix, Lily L.;
- Parapatics, Katja;
- Cerny-Reiterer, Sabine;
- Burkard, Thomas R.;
- Jäger, Ulrich;
- Melo, Junia V.;
- Bennett, Keiryn L.;
- Valent, Peter;
- Superti-Furga, Giulio
Publication type:
Article
Functional Dissection of the TBK1 Molecular Network.
Published in:
PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0023971
By:
- Goncalves, Adriana;
- Bü rckstümmer, Tilmann;
- Dixit, Evelyn;
- Scheicher, Ruth;
- Go' rna, Maria W.;
- Karayel, Evren;
- Sugar, Cristina;
- Stukalov, Alexey;
- Berg, Tiina;
- Kralovics, Robert;
- Planyavsky, Melanie;
- Bennett, Keiryn L.;
- Colinge, Jacques;
- Superti-Furga, Giulio
Publication type:
Article
MASPECTRAS 2: An integration and analysis platform for proteomic data.
Published in:
Proteomics, 2010, v. 10, n. 14, p. 2719, doi. 10.1002/pmic.201000075
By:
- Mohien, Ceereena Ubaida;
- Hartler, Jürgen;
- Breitwieser, Florian;
- Rix, Uwe;
- Rix, Lily Remsing;
- Winter, Georg E.;
- Thallinger, Gerhard G.;
- Bennett, Keiryn L.;
- Superti-Furga, Giulio;
- Trajanoski, Zlatko;
- Colinge, Jacques
Publication type:
Article
Assessing peptide de novo sequencing algorithms performance on large and diverse data sets.
Published in:
Proteomics, 2007, v. 7, n. 17, p. 3051, doi. 10.1002/pmic.200700224
By:
- Pitzer, Erik;
- Masselot, Alexandre;
- Colinge, Jacques
Publication type:
Article
In vitro and in silico processes to identify differentially expressed proteins.
Published in:
Proteomics, 2004, v. 4, n. 8, p. 2333, doi. 10.1002/pmic.200300840
By:
- Nadia Allet;
- Nicolas Barrillat;
- Thierry Baussant;
- Celia Boiteau;
- Paolo Botti;
- Lydie Bougueleret;
- Nicolas Budin;
- Denis Canet;
- Stéphanie Carraud;
- Diego Chiappe;
- Nicolas Christmann;
- Jacques Colinge;
- Isabelle Cusin;
- Nicolas Dafflon;
- Benoît Depresle;
- Irène Fasso;
- Pascal Frauchiger;
- Hubert Gaertner;
- Anne Gleizes;
- Eduardo Gonzalez-Couto
Publication type:
Article
Industrial-scale proteomics: From liters of plasma to chemically synthesized proteins.
Published in:
Proteomics, 2004, v. 4, n. 7, p. 2125, doi. 10.1002/pmic.200300718
By:
- Keith Rose;
- Lydie Bougueleret;
- Thierry Baussant;
- Günter Böhm;
- Paolo Botti;
- Jacques Colinge;
- Isabelle Cusin;
- Hubert Gaertner;
- Anne Gleizes;
- Manfred Heller;
- Silvia Jimenez;
- Andrew Johnson;
- Martin Kussmann;
- Laure Menin;
- Christoph Menzel;
- Frederic Ranno;
- Patricia Rodriguez-Tomé;
- John Rogers;
- Cedric Saudrais;
- Matteo Villain
Publication type:
Article
High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics.
Published in:
Proteomics, 2004, v. 4, n. 7, p. 1977, doi. 10.1002/pmic.200300708
By:
- Jacques Colinge;
- Alexandre Masselot;
- Isabelle Cusin;
- Eve Mahé;
- Anne Niknejad;
- Ghislaine Argoud-Puy;
- Samia Reffas;
- Nassima Bederr;
- Anne Gleizes;
- Pierre-Antoine Rey;
- Lydie Bougueleret
Publication type:
Article
OLAV: Towards high-throughput tandem mass spectrometry data identification.
Published in:
Proteomics, 2003, v. 3, n. 8, p. 1454, doi. 10.1002/pmic.200300485
By:
- Jacques Colinge;
- Alexandre Masselot;
- Marc Giron;
- Thierry Dessingy;
- Jérôme Magnin
Publication type:
Article
Improved peptide charge state assignment.
Published in:
Proteomics, 2003, v. 3, n. 8, p. 1434, doi. 10.1002/pmic.200300489
By:
- Jacques Colinge;
- Jérôme Magnin;
- Thierry Dessingy;
- Marc Giron;
- Alexandre Masselot
Publication type:
Article
CLOUD - CeMM library of unique drugs.
Published in:
2012
By:
- Markt, Patrick;
- Dürnberger, Gerhard;
- Colinge, Jacques;
- Kubicek, Stefan
Publication type:
Abstract
TOPS: a versatile software tool for statistical analysis and visualization of combinatorial genegene and gene-drug interaction screens.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-98
By:
- Muellner, Markus K.;
- Duernberger, Gerhard;
- Ganglberger, Florian;
- Kerzendorfer, Claudia;
- Uras, Iris Z.;
- Schoenegger, Andreas;
- Bagienski, Klaudia;
- Colinge, Jacques;
- Nijman, Sebastian MB
Publication type:
Article
Application of modular response analysis to medium- to large-size biological systems.
Published in:
PLoS Computational Biology, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pcbi.1009312
By:
- Mekedem, Meriem;
- Ravel, Patrice;
- Colinge, Jacques
Publication type:
Article
Design and selection of optimal ErbB-targeting bispecific antibodies in pancreatic cancer.
Published in:
Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1168444
By:
- Rabia, Emilia;
- Garambois, Vèronique;
- Dhommeè, Christine;
- Larbouret, Christel;
- Lajoie, Laurie;
- Buscail, Yoan;
- Jimenez-Dominguez, Gabriel;
- Choblet-Thery, Sylvie;
- Liaudet-Coopman, Emmanuelle;
- Cerutti, Martine;
- Jarlier, Marta;
- Ravel, Patrice;
- Gros, Laurent;
- Pirot, Nelly;
- Thibault, Gilles;
- Zhukovsky, Eugene A.;
- Gèrard, Pierre-Emmanuel;
- Pèlegrin, Andre';
- Colinge, Jacques;
- Chardès, Thierry
Publication type:
Article
Targeting a cell state common to triple-negative breast cancers.
Published in:
Molecular Systems Biology, 2015, v. 11, n. 2, p. n/a, doi. 10.15252/msb.20145664
By:
- Muellner, Markus K;
- Mair, Barbara;
- Ibrahim, Yasir;
- Kerzendorfer, Claudia;
- Lechtermann, Hannelore;
- Trefzer, Claudia;
- Klepsch, Freya;
- Müller, André C;
- Leitner, Ernestine;
- Macho‐Maschler, Sabine;
- Superti‐Furga, Giulio;
- Bennett, Keiryn L;
- Baselga, José;
- Rix, Uwe;
- Kubicek, Stefan;
- Colinge, Jacques;
- Serra, Violeta;
- Nijman, Sebastian MB
Publication type:
Article
Perturbation of the mutated EGFR interactome identifies vulnerabilities and resistance mechanisms.
Published in:
Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.61
By:
- Li, Jiannong;
- Bennett, Keiryn;
- Stukalov, Alexey;
- Fang, Bin;
- Zhang, Guolin;
- Yoshida, Takeshi;
- Okamoto, Isamu;
- Kim, Jae‐Young;
- Song, Lanxi;
- Bai, Yun;
- Qian, Xiaoning;
- Rawal, Bhupendra;
- Schell, Michael;
- Grebien, Florian;
- Winter, Georg;
- Rix, Uwe;
- Eschrich, Steven;
- Colinge, Jacques;
- Koomen, John;
- Superti‐Furga, Giulio
Publication type:
Article
A Computational Approach to Analyze the Mechanism of Action of the Kinase Inhibitor Bafetinib.
Published in:
PLoS Computational Biology, 2010, v. 6, n. 11, p. 1, doi. 10.1371/journal.pcbi.1001001
By:
- Burkard, Thomas R.;
- Rix, Uwe;
- Breitwieser, Florian P.;
- Superti-Furga, Giulio;
- Colinge, Jacques
Publication type:
Article
Introduction to Computational Proteomics.
Published in:
PLoS Computational Biology, 2007, v. 3, n. 7, p. e114, doi. 10.1371/journal.pcbi.0030114
By:
- Colinge, Jacques;
- Bennett, Keiryn L.
Publication type:
Article
Corrigendum: CD4+ T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2.
Published in:
Nature Immunology, 2014, v. 15, n. 9, p. 894, doi. 10.1038/ni0914-894e
By:
- Boucheron, Nicole;
- Tschismarov, Roland;
- Goeschl, Lisa;
- A Moser, Mirjam;
- Lagger, Sabine;
- Sakaguchi, Shinya;
- Winter, Mircea;
- Lenz, Florian;
- Vitko, Dijana;
- Breitwieser, Florian P;
- Müller, Lena;
- Hassan, Hammad;
- Bennett, Keiryn L;
- Colinge, Jacques;
- Schreiner, Wolfgang;
- Egawa, Takeshi;
- Taniuchi, Ichiro;
- Matthias, Patrick;
- Seiser, Christian;
- Ellmeier, Wilfried
Publication type:
Article
CD4+ T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2.
Published in:
Nature Immunology, 2014, v. 15, n. 5, p. 439, doi. 10.1038/ni.2864
By:
- Boucheron, Nicole;
- Tschismarov, Roland;
- Goeschl, Lisa;
- Moser, Mirjam A;
- Lagger, Sabine;
- Sakaguchi, Shinya;
- Winter, Mircea;
- Lenz, Florian;
- Vitko, Dijana;
- Breitwieser, Florian P;
- Müller, Lena;
- Hassan, Hammad;
- Bennett, Keiryn L;
- Colinge, Jacques;
- Schreiner, Wolfgang;
- Egawa, Takeshi;
- Taniuchi, Ichiro;
- Matthias, Patrick;
- Seiser, Christian;
- Ellmeier, Wilfried
Publication type:
Article
IFIT1 is an antiviral protein that recognizes 5?-triphosphate RNA.
Published in:
Nature Immunology, 2011, v. 12, n. 7, p. 624, doi. 10.1038/ni.2048
By:
- Pichlmair, Andreas;
- Lassnig, Caroline;
- Eberle, Carol-Ann;
- Górna, Maria W;
- Baumann, Christoph L;
- Burkard, Thomas R;
- Bürckstümmer, Tilmann;
- Stefanovic, Adrijana;
- Krieger, Sigurd;
- Bennett, Keiryn L;
- Rülicke, Thomas;
- Weber, Friedemann;
- Colinge, Jacques;
- Müller, Mathias;
- Superti-Furga, Giulio
Publication type:
Article
An orthogonal proteomic-genomic screen identifies AIM2 as a cytoplasmic DNA sensor for the inflammasome.
Published in:
Nature Immunology, 2009, v. 10, n. 3, p. 266, doi. 10.1038/ni.1702
By:
- Bürckstümmer, Tilmann;
- Baumann, Christoph;
- Blüml, Stephan;
- Dixit, Evelyn;
- Dürnberger, Gerhard;
- Jahn, Hannah;
- Planyavsky, Melanie;
- Bilban, Martin;
- Colinge, Jacques;
- Bennett, Keiryn L;
- Superti-Furga, Giulio
Publication type:
Article
Data-Based Radiation Oncology: Design of Clinical Trials in the Toxicity Biomarkers era.
Published in:
Frontiers in Oncology, 2017, v. 7, p. 1, doi. 10.3389/fonc.2017.00083
By:
- Azria, David;
- Lapierre, Ariane;
- Gourgou, Sophie;
- De Ruysscher, Dirk;
- Colinge, Jacques;
- Lambin, Philippe;
- Brengues, Muriel;
- Ward, Tim;
- Bentzen, Søren M.;
- Thierens, Hubert;
- Rancati, Tiziana;
- Talbot, Christopher J.;
- Vega, Ana;
- Kerns, Sarah L.;
- Andreassen, Christian Nicolaj;
- Chang-Claude, Jenny;
- West, Catharine M. L.;
- Gill, Corey M.;
- Rosenstein, Barry S.
Publication type:
Article
Biallelic loss-of-function mutation in NIK causes a primary immunodeficiency with multifaceted aberrant lymphoid immunity.
Published in:
Nature Communications, 2014, v. 5, n. 11, p. 5360, doi. 10.1038/ncomms6360
By:
- Willmann, Katharina L.;
- Klaver, Stefanie;
- Doğu, Figen;
- Santos-Valente, Elisangela;
- Garncarz, Wojciech;
- Bilic, Ivan;
- Mace, Emily;
- Salzer, Elisabeth;
- Domínguez Conde, Cecilia;
- Sic, Heiko;
- Májek, Peter;
- Banerjee, Pinaki P.;
- Vladimer, Gregory I.;
- Haskoloğlu, Şule;
- Gökalp Bolkent, Musa;
- Küpesiz, Alphan;
- Condino-Neto, Antonio;
- Colinge, Jacques;
- Superti-Furga, Giulio;
- Pickl, Winfried F.
Publication type:
Article
Experimental characterization of the human nonsequence- specific nucleic acid interactome.
Published in:
Genome Biology, 2013, v. 14, n. 7, p. 1, doi. 10.1186/gb-2013-14-7-r81
By:
- Dürnberger, Gerhard;
- Bürckstümmer, Tilmann;
- Huber, Kilian;
- Giambruno, Roberto;
- Doerks, Tobias;
- Karayel, Evren;
- Burkard, Thomas R.;
- Kaupe, Ines;
- Müller, André C.;
- Schönegger, Andreas;
- Ecker, Gerhard F.;
- Lohninger, Hans;
- Bork, Peer;
- Bennett, Keiryn L.;
- Superti-Furga, Giulio;
- Colinge, Jacques
Publication type:
Article
SYSTEMS BIOLOGY ANALYSIS OF KINASE INHIBITOR ACTION IN LEUKEMIA TREATMENTS.
Published in:
Biomedical Engineering / Biomedizinische Technik, 2013, v. 58, p. 1, doi. 10.1515/bmt-2013-4306
By:
- Colinge, Jacques
Publication type:
Article
FT-GPI, a highly sensitive and accurate predictor of GPI-anchored proteins, reveals the composition and evolution of the GPI proteome in Plasmodium species.
Published in:
Malaria Journal, 2023, v. 22, n. 1, p. 1, doi. 10.1186/s12936-022-04430-0
By:
- Sauer, Lena M.;
- Canovas, Rodrigo;
- Roche, Daniel;
- Shams-Eldin, Hosam;
- Ravel, Patrice;
- Colinge, Jacques;
- Schwarz, Ralph T.;
- Ben Mamoun, Choukri;
- Rivals, Eric;
- Cornillot, Emmanuel
Publication type:
Article
The Triggering Receptor Expressed on Myeloid Cells 2 Inhibits Complement Component 1q Effector Mechanisms and Exerts Detrimental Effects during Pneumococcal Pneumonia.
Published in:
PLoS Pathogens, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.ppat.1004167
By:
- Sharif, Omar;
- Gawish, Riem;
- Warszawska, Joanna M.;
- Martins, Rui;
- Lakovits, Karin;
- Hladik, Anastasiya;
- Doninger, Bianca;
- Brunner, Julia;
- Korosec, Ana;
- Schwarzenbacher, Roland E.;
- Berg, Tiina;
- Kralovics, Robert;
- Colinge, Jacques;
- Mesteri, Ildiko;
- Gilfillan, Susan;
- Salmaggi, Andrea;
- Verschoor, Admar;
- Colonna, Marco;
- Knapp, Sylvia
Publication type:
Article
An R package for generic modular response analysis and its application to estrogen and retinoic acid receptor crosstalk.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86544-0
By:
- Jimenez-Dominguez, Gabriel;
- Ravel, Patrice;
- Jalaguier, Stéphan;
- Cavaillès, Vincent;
- Colinge, Jacques
Publication type:
Article
MAGI1 inhibits the AMOTL2/p38 stress pathway and prevents luminal breast tumorigenesis.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-85056-1
By:
- Kantar, Diala;
- Mur, Emilie Bousquet;
- Mancini, Maicol;
- Slaninova, Vera;
- Salah, Yezza Ben;
- Costa, Luca;
- Forest, Elodie;
- Lassus, Patrice;
- Géminard, Charles;
- Boissière-Michot, Florence;
- Orsetti, Béatrice;
- Theillet, Charles;
- Colinge, Jacques;
- Benistant, Christine;
- Maraver, Antonio;
- Heron-Milhavet, Lisa;
- Djiane, Alexandre
Publication type:
Article
Distinct oncogenes drive different genome and epigenome alterations in human mammary epithelial cells.
Published in:
International Journal of Cancer, 2019, v. 145, n. 5, p. 1299, doi. 10.1002/ijc.32413
By:
- Fonti, Claire;
- Saumet, Anne;
- Abi‐Khalil, Amanda;
- Orsetti, Béatrice;
- Cleroux, Elouan;
- Bender, Ambre;
- Dumas, Michael;
- Schmitt, Emeline;
- Colinge, Jacques;
- Jacot, William;
- Weber, Michael;
- Sardet, Claude;
- du Manoir, Stanislas;
- Theillet, Charles
Publication type:
Article
Stereospecific targeting of MTH1 by (S)-crizotinib as an anticancer strategy.
Published in:
Nature, 2014, v. 508, n. 7495, p. 222, doi. 10.1038/nature13194
By:
- Huber, Kilian V. M.;
- Salah, Eidarus;
- Radic, Branka;
- Gridling, Manuela;
- Elkins, Jonathan M.;
- Stukalov, Alexey;
- Jemth, Ann-Sofie;
- Göktürk, Camilla;
- Sanjiv, Kumar;
- Strömberg, Kia;
- Pham, Therese;
- Berglund, Ulrika Warpman;
- Colinge, Jacques;
- Bennett, Keiryn L.;
- Loizou, Joanna I.;
- Helleday, Thomas;
- Knapp, Stefan;
- Superti-Furga, Giulio
Publication type:
Article
Detecting the impact of sequencing errors on SAGE data.
Published in:
Bioinformatics, 2001, v. 17, n. 9, p. 840, doi. 10.1093/bioinformatics/17.9.840
By:
- Colinge, Jacques;
- Feger, Georg
Publication type:
Article
Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR.
Published in:
Nucleic Acids Research, 2023, v. 51, n. 10, p. 4726, doi. 10.1093/nar/gkad352
By:
- Villemin, Jean-Philippe;
- Bassaganyas, Laia;
- Pourquier, Didier;
- Boissière, Florence;
- Cabello-Aguilar, Simon;
- Crapez, Evelyne;
- Tanos, Rita;
- Cornillot, Emmanuel;
- Turtoi, Andrei;
- Colinge, Jacques
Publication type:
Article
SingleCellSignalR: inference of intercellular networks from single-cell transcriptomics.
Published in:
Nucleic Acids Research, 2020, v. 48, n. 10, p. e55, doi. 10.1093/nar/gkaa183
By:
- Cabello-Aguilar, Simon;
- Alame, Mélissa;
- Kon-Sun-Tack, Fabien;
- Fau, Caroline;
- Lacroix, Matthieu;
- Colinge, Jacques
Publication type:
Article
Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia.
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Malaria Journal, 2017, v. 16, p. 1, doi. 10.1186/s12936-017-2140-1
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- Dwivedi, Ankit;
- Reynes, Christelle;
- Kuehn, Axel;
- Roche, Daniel B.;
- Khim, Nimol;
- Hebrard, Maxim;
- Milanesi, Sylvain;
- Rivals, Eric;
- Frutos, Roger;
- Menard, Didier;
- Mamoun, Choukri Ben;
- Colinge, Jacques;
- Cornillot, Emmanuel
Publication type:
Article
Cancer-associated fibroblast spatial heterogeneity and EMILIN1 expression in the tumor microenvironment modulate TGF-β activity and CD8+ T-cell infiltration in breast cancer.
Published in:
Theranostics, 2024, v. 14, n. 5, p. 1873, doi. 10.7150/thno.90627
By:
- Chikako Kanno Honda;
- Sasagu Kurozumi;
- Takaaki Fujii;
- Pourquier, Didier;
- Khellaf, Lakhdar;
- Boissiere, Florence;
- Jun Horiguchi;
- Tetsunari Oyama;
- Ken Shirabe;
- Colinge, Jacques;
- Takehiko Yokobori;
- Turtoi, Andrei
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Article
The landscape of cancer-associated fibroblasts in colorectal cancer liver metastases.
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Theranostics, 2022, v. 12, n. 17, p. 7624, doi. 10.7150/thno.72853
By:
- Giguelay, Ambre;
- Turtoi, Evgenia;
- Khelaf, Lakhdar;
- Tosato, Guillaume;
- Dadi, Ikrame;
- Chastel, Tommy;
- Poul, Marie-Alix;
- Pratlong, Marine;
- Nicolescu, Stefan;
- Severac, Dany;
- Adenis, Antoine;
- Sgarbura, Olivia;
- Carrère, Sébastien;
- Rouanet, Philippe;
- Quenet, François;
- Ychou, Marc;
- Pourquier, Didier;
- Colombo, Pierre-Emmanuel;
- Turtoi, Andrei;
- Colinge, Jacques
Publication type:
Article
The immune contexture of primary central nervous system diffuse large B cell lymphoma associates with patient survival and specific cell signaling.
Published in:
Theranostics, 2021, v. 11, n. 8, p. 3565, doi. 10.7150/thno.54343
By:
- Alame, Melissa;
- Cornillot, Emmanuel;
- Cacheux, Valère;
- Rigau, Valérie;
- Costes-Martineau, Valérie;
- Lacheretz-Szablewski, Vanessa;
- Colinge, Jacques
Publication type:
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Farnesyltransferase inhibition overcomes oncogene-addicted non-small cell lung cancer adaptive resistance to targeted therapies.
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Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49360-4
By:
- Figarol, Sarah;
- Delahaye, Célia;
- Gence, Rémi;
- Doussine, Aurélia;
- Cerapio, Juan Pablo;
- Brachais, Mathylda;
- Tardy, Claudine;
- Béry, Nicolas;
- Asslan, Raghda;
- Colinge, Jacques;
- Villemin, Jean-Philippe;
- Maraver, Antonio;
- Ferrer, Irene;
- Paz-Ares, Luis;
- Kessler, Linda;
- Burrows, Francis;
- Lajoie-Mazenc, Isabelle;
- Dongay, Vincent;
- Morin, Clara;
- Florent, Amélie
Publication type:
Article

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