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RNA binding protein SYNCRIP maintains proteostasis and self-renewal of hematopoietic stem and progenitor cells.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38001-x
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- Article
TP53 mutations and RNA-binding protein MUSASHI-2 drive resistance to PRMT5-targeted therapy in B-cell lymphoma.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33137-8
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- Article
Musashi2 sustains the mixed-lineage leukemia--driven stem cell regulatory program.
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- Journal of Clinical Investigation, 2015, v. 125, n. 3, p. 1286, doi. 10.1172/JCI78440
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- Article
Cross-talk between PRMT1-mediated methylation and ubiquitylation on RBM15 controls RNA splicing.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.07938
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- Article
HiC-DC+ enables systematic 3D interaction calls and differential analysis for Hi-C and HiChIP.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23749-x
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- Article
Characterization of a set of tumor suppressor microRNAs in T cell acute lymphoblastic leukemia.
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- Science Signaling, 2014, v. 7, n. 352, p. 1, doi. 10.1126/scisignal.2005500
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- Article
Base editing sensor libraries for high-throughput engineering and functional analysis of cancer-associated single nucleotide variants.
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- Nature Biotechnology, 2022, v. 40, n. 6, p. 862, doi. 10.1038/s41587-021-01172-3
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- Article
Prediction of potent shRNAs with a sequential classification algorithm.
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- Nature Biotechnology, 2017, v. 35, n. 4, p. 350, doi. 10.1038/nbt.3807
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- Article
GuideScan software for improved single and paired CRISPR guide RNA design.
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- Nature Biotechnology, 2017, v. 35, n. 4, p. 347, doi. 10.1038/nbt.3804
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- Article
Affinity regression predicts the recognition code of nucleic acid-binding proteins.
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- Nature Biotechnology, 2015, v. 33, n. 12, p. 1242, doi. 10.1038/nbt.3343
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- Article
Genomic safe harbors permit high β-globin transgene expression in thalassemia induced pluripotent stem cells.
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- Nature Biotechnology, 2011, v. 29, n. 1, p. 73, doi. 10.1038/nbt.1717
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Corrigendum: Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs.
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- 2009
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- Correction Notice
CSF-1R inhibition alters macrophage polarization and blocks glioma progression.
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- Nature Medicine, 2013, v. 19, n. 10, p. 1264, doi. 10.1038/nm.3337
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- Article
Combining integrated genomics and functional genomics to dissect the biology of a cancer-associated, aberrant transcription factor, the ASPSCR1-TFE3 fusion oncoprotein Combining integrated genomics and functional genomics to dissect the biology of a cancer-associated, aberrant transcription factor, the ASPSCR1-TFE3 fusion oncoprotein
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- Journal of Pathology, 2013, v. 229, n. 5, p. 743, doi. 10.1002/path.4158
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- Article
Early enhancer establishment and regulatory locus complexity shape transcriptional programs in hematopoietic differentiation.
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- Nature Genetics, 2015, v. 47, n. 11, p. 1249, doi. 10.1038/ng.3402
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- Article
An allelic series of miR-17∼92-mutant mice uncovers functional specialization and cooperation among members of a microRNA polycistron.
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- Nature Genetics, 2015, v. 47, n. 7, p. 766, doi. 10.1038/ng.3321
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- Article
Corrigendum: A cooperative microRNA-tumor suppressor gene network in acute T-cell lymphoblastic leukemia (T-ALL).
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- 2011
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- Correction Notice
A cooperative microRNA-tumor suppressor gene network in acute T-cell lymphoblastic leukemia (T-ALL).
- Published in:
- Nature Genetics, 2011, v. 43, n. 7, p. 673, doi. 10.1038/ng.858
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- Article
Cytosolic phospholipase A<sub>2</sub> contributes to innate immune defense against Candida albicans lung infection.
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- BMC Immunology, 2016, v. 17, p. 1, doi. 10.1186/s12865-016-0165-9
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- Article
Inhibition of the MEK1/ERK pathway reduces arachidonic acid release independently of cPLA<sub>2</sub> phosphorylation and translocation.
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- BMC Biochemistry, 2002, v. 3, p. 1
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- Article
Identifying remote protein homologs by network propagation.
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- FEBS Journal, 2005, v. 272, n. 20, p. 5119, doi. 10.1111/j.1742-4658.2005.04947.x
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- Article
Learning Regulatory Programs That Accurately Predict Differential Expression with MEDUSA.
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- Annals of the New York Academy of Sciences, 2007, v. 1115, p. 178, doi. 10.1196/annals.1407.020
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- Article
Multitask learning improves prediction of cancer drug sensitivity.
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- Scientific Reports, 2016, p. 31619, doi. 10.1038/srep31619
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- Article
Cytosolic Phospholipase A<sub>2</sub>α and Eicosanoids Regulate Expression of Genes in Macrophages Involved in Host Defense and Inflammation.
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- PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0069002
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- Article
Determining Frequent Patterns of Copy Number Alterations in Cancer.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012028
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- Article
Role of Cytosolic Phospholipase A<sub>2</sub> in Prostaglandin E<sub>2</sub> Production by Lung Fibroblasts.
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- American Journal of Respiratory Cell & Molecular Biology, 2004, v. 30, n. 1, p. 91, doi. 10.1165/rcmb.2003-0005OC
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- Article
Chromatin-informed inference of transcriptional programs in gynecologic and basal breast cancers.
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- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12291-6
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- Article
KRAS mutant rectal cancer cells interact with surrounding fibroblasts to deplete the extracellular matrix.
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- Molecular Oncology, 2021, v. 15, n. 10, p. 2766, doi. 10.1002/1878-0261.12960
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- Article
Cytosolic Phospholipase A<sub>2</sub> Activation by Candida albicans in Alveolar Macrophages Role of Dectin-1.
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- American Journal of Respiratory Cell & Molecular Biology, 2010, v. 42, n. 4, p. 415, doi. 10.1165/rcmb.2009-0110OC
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- Article
Combining classifiers for improved classification of proteins from sequence or structure.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-389
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- Article
NIPS workshop on New Problems and Methods in Computational Biology.
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- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-S10-S1
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- Article
Analysis of tumour- and stroma-supplied proteolytic networks reveals a brain-metastasis-promoting role for cathepsin S.
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- Nature Cell Biology, 2014, v. 16, n. 9, p. 876, doi. 10.1038/ncb3011
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- Article
COPI acts in both vesicular and tubular transport.
- Published in:
- Nature Cell Biology, 2011, v. 13, n. 8, p. 996, doi. 10.1038/ncb2273
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- Article
Genome-wide RNA-mediated interference screen identifies miR-19 targets in Notch-induced T-cell acute lymphoblastic leukaemia.
- Published in:
- Nature Cell Biology, 2010, v. 12, n. 4, p. 372, doi. 10.1038/ncb2037
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- Article
Serine hydrolase inhibitors block necrotic cell death by preventing calcium overload of the mitochondria and permeability transition pore formation (756.2).
- Published in:
- FASEB Journal, 2014, v. 28, p. N.PAG, doi. 10.1096/fasebj.28.1_supplement.756.2
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- Article
Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma.
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- Molecular Systems Biology, 2012, v. 8, n. 1, p. 605, doi. 10.1038/msb.2012.37
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- Article
Target mRNA abundance dilutes microRNA and siRNA activity.
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- Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.24
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- Article
SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps.
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- PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004271
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- Article
Detecting Remote Evolutionary Relationships among Proteins by Large-Scale Semantic Embedding.
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- PLoS Computational Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1371/journal.pcbi.1001047
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- Article
High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions.
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- PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000916
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- Article
Learning "graph-mer" Motifs that Predict Gene Expression Trajectories in Development.
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- PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000761
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- Article
A Predictive Model of the Oxygen and Heme Regulatory Network in Yeast.
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- PLoS Computational Biology, 2008, v. 4, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000224
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- Article
Transcription factor Foxp3 and its protein partners form a complex regulatory network.
- Published in:
- Nature Immunology, 2012, v. 13, n. 10, p. 1010, doi. 10.1038/ni.2402
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- Article
Cytotoxic granzyme C–expressing ILC1s contribute to antitumor immunity and neonatal autoimmunity.
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- Science Immunology, 2022, v. 7, n. 70, p. 1, doi. 10.1126/sciimmunol.abi8642
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- Publication type:
- Article
An integrated model for detecting significant chromatin interactions from high-resolution Hi-C data.
- Published in:
- Nature Communications, 2017, v. 8, n. 5, p. 15454, doi. 10.1038/ncomms15454
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- Article
Pancancer modelling predicts the context-specific impact of somatic mutations on transcriptional programs.
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- Nature Communications, 2017, v. 8, n. 1, p. 14249, doi. 10.1038/ncomms14249
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- Article
Author Correction: Epiphany: predicting Hi-C contact maps from 1D epigenomic signals.
- Published in:
- 2024
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- Correction Notice
Epiphany: predicting Hi-C contact maps from 1D epigenomic signals.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02934-9
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- Article
BindVAE: Dirichlet variational autoencoders for de novo motif discovery from accessible chromatin.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02723-w
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- Article
Mycoplasma pneumoniae stimulates cPLA2 activation and eicosanoid production in human alveolar macrophages and mouse-RAW264.7 macrophages.
- Published in:
- FASEB Journal, 2007, v. 21, n. 6, p. A977
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- Article