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Linked-read sequencing for detecting short tandem repeat expansions.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-13024-4
By:
- Chiu, Readman;
- Rajan-Babu, Indhu-Shree;
- Birol, Inanc;
- Friedman, Jan M.
Publication type:
Article
A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.
Published in:
Plant Journal, 2007, v. 50, n. 6, p. 1063, doi. 10.1111/j.1365-313X.2007.03112.x
By:
- Kelleher, Colin T.;
- Chiu, Readman;
- Shin, Heesun;
- Bosdet, Ian E.;
- Krzywinski, Martin I.;
- Fjell, Chris D.;
- Wilkin, Jennifer;
- Yin, TongMing;
- DiFazio, Stephen P.;
- Ali, Johar;
- Asano, Jennifer K.;
- Chan, Susanna;
- Cloutier, Alison;
- Girn, Noreen;
- Leach, Stephen;
- Lee, Darlene;
- Mathewson, Carrie A.;
- Olson, Teika;
- O'Connor, Katie;
- Prabhu, Anna-Liisa
Publication type:
Article
A clinical transcriptome approach to patient stratification and therapy selection in acute myeloid leukemia.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22625-y
By:
- Docking, T. Roderick;
- Parker, Jeremy D. K.;
- Jädersten, Martin;
- Duns, Gerben;
- Chang, Linda;
- Jiang, Jihong;
- Pilsworth, Jessica A.;
- Swanson, Lucas A.;
- Chan, Simon K.;
- Chiu, Readman;
- Nip, Ka Ming;
- Mar, Samantha;
- Mo, Angela;
- Wang, Xuan;
- Martinez-Høyer, Sergio;
- Stubbins, Ryan J.;
- Mungall, Karen L.;
- Mungall, Andrew J.;
- Moore, Richard A.;
- Jones, Steven J. M.
Publication type:
Article
Correction to: Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions.
Published in:
2021
By:
- Rajan-Babu, Indhu-Shree;
- Peng, Junran J.;
- Chiu, Readman;
- IMAGINE Study;
- Birch, Patricia;
- Couse, Madeline;
- Guimond, Colleen;
- Lehman, Anna;
- Mwenifumbo, Jill;
- van Karnebeek, Clara;
- Friedman, Jan;
- CAUSES Study;
- Adam, Shelin;
- Du Souich, Christele;
- Elliott, Alison;
- Nelson, Tanya;
- Rajan-Babu;
- Li, Chenkai;
- Mohajeri, Arezoo;
- Dolzhenko, Egor
Publication type:
Correction Notice
Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers.
Published in:
Journal of Pathology, 2012, v. 226, n. 1, p. 7, doi. 10.1002/path.2995
By:
- Yip, Stephen;
- Butterfield, Yaron S;
- Morozova, Olena;
- Chittaranjan, Suganthi;
- Blough, Michael D;
- An, Jianghong;
- Birol, Inanc;
- Chesnelong, Charles;
- Chiu, Readman;
- Chuah, Eric;
- Corbett, Richard;
- Docking, Rod;
- Firme, Marlo;
- Hirst, Martin;
- Jackman, Shaun;
- Karsan, Aly;
- Li, Haiyan;
- Louis, David N;
- Maslova, Alexandra;
- Moore, Richard
Publication type:
Article
De novo assembly and analysis of RNA-seq data.
Published in:
Nature Methods, 2010, v. 7, n. 11, p. 909, doi. 10.1038/nmeth.1517
By:
- Robertson, Gordon;
- Schein, Jacqueline;
- Chiu, Readman;
- Corbett, Richard;
- Field, Matthew;
- Jackman, Shaun D.;
- Mungall, Karen;
- Sam Lee;
- Okada, Hisanaga Mark;
- Qian, Jenny Q.;
- Griffith, Malachi;
- Raymond, Anthony;
- Thiessen, Nina;
- Cezard, Timothee;
- Butterfield, Yaron S.;
- Newsome, Richard;
- Chan, Simon K.;
- Rong She;
- Varhol, Richard;
- Kamoh, Baljit
Publication type:
Article
Improved white spruce ( Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism.
Published in:
Plant Journal, 2015, v. 83, n. 2, p. 189, doi. 10.1111/tpj.12886
By:
- Warren, René L.;
- Keeling, Christopher I.;
- Yuen, Macaire Man Saint;
- Raymond, Anthony;
- Taylor, Greg A.;
- Vandervalk, Benjamin P.;
- Mohamadi, Hamid;
- Paulino, Daniel;
- Chiu, Readman;
- Jackman, Shaun D.;
- Robertson, Gordon;
- Yang, Chen;
- Boyle, Brian;
- Hoffmann, Margarete;
- Weigel, Detlef;
- Nelson, David R.;
- Ritland, Carol;
- Isabel, Nathalie;
- Jaquish, Barry;
- Yanchuk, Alvin
Publication type:
Article
Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38553-y
By:
- Nip, Ka Ming;
- Hafezqorani, Saber;
- Gagalova, Kristina K.;
- Chiu, Readman;
- Yang, Chen;
- Warren, René L.;
- Birol, Inanc
Publication type:
Article
Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38553-y
By:
- Nip, Ka Ming;
- Hafezqorani, Saber;
- Gagalova, Kristina K.;
- Chiu, Readman;
- Yang, Chen;
- Warren, René L.;
- Birol, Inanc
Publication type:
Article
Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02447-3
By:
- Chiu, Readman;
- Rajan-Babu, Indhu-Shree;
- Friedman, Jan M.;
- Birol, Inanc
Publication type:
Article
Purification and identification of tyrosine-phosphorylated proteins from B lymphocytes stimulated through the antigen receptor.
Published in:
Electrophoresis, 1994, v. 15, n. 1, p. 441, doi. 10.1002/elps.1150150161
By:
- Gold, Michael R.;
- Yungwirth, Tom;
- Sutherland, Claire L.;
- Ingham, Robert J.;
- Vianzon, Daisy;
- Chiu, Readman;
- Van Oostveen, Inge;
- Morrison, Hamish D.;
- Aebersold, Ruedi
Publication type:
Article
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma.
Published in:
Nature, 2011, v. 476, n. 7360, p. 298, doi. 10.1038/nature10351
By:
- Morin, Ryan D.;
- Mendez-Lago, Maria;
- Mungall, Andrew J.;
- Goya, Rodrigo;
- Mungall, Karen L.;
- Corbett, Richard D.;
- Johnson, Nathalie A.;
- Severson, Tesa M.;
- Chiu, Readman;
- Field, Matthew;
- Jackman, Shaun;
- Krzywinski, Martin;
- Scott, David W.;
- Trinh, Diane L.;
- Tamura-Wells, Jessica;
- Li, Sa;
- Firme, Marlo R.;
- Rogic, Sanja;
- Griffith, Malachi;
- Chan, Susanna
Publication type:
Article
A set of BAC clones spanning the human genome.
Published in:
Nucleic Acids Research, 2004, v. 32, n. 12, p. 3651, doi. 10.1093/nar/gkh700
By:
- Krzywinski, Martin;
- Bosdet, Ian;
- Smailus, Duane;
- Chiu, Readman;
- Mathewson, Carrie;
- Wye, Natasja;
- Barber, Sarah;
- Brown-John, Mabel;
- Chan, Susanna;
- Chand, Steve;
- Cloutier, Alison;
- Girn, Noreen;
- Lee, Darlene;
- Masson, Amara;
- Mayo, Michael;
- Olson, Teika;
- Pandoh, Pawan;
- Prabhu, Anna-Liisa;
- Schoenmakers, Eric;
- Tsai, Miranda
Publication type:
Article
TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.
Published in:
BMC Medical Genomics, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s12920-018-0402-6
By:
- Chiu, Readman;
- Nip, Ka Ming;
- Chu, Justin;
- Birol, Inanc
Publication type:
Article
Konnector v2.0: pseudo-long reads from paired-end sequencing data.
Published in:
BMC Medical Genomics, 2015, v. 8, p. 1, doi. 10.1186/1755-8794-8-S3-S1
By:
- Vandervalk, Benjamin P.;
- Chen Yang;
- Zhuyi Xue;
- Raghavan, Karthika;
- Chu, Justin;
- Mohamadi, Hamid;
- Jackman, Shaun D.;
- Chiu, Readman;
- Warren, René L.;
- Birol, Inanç
Publication type:
Article
Recurrent tumor-specific regulation of alternative polyadenylation of cancerrelated genes.
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4903-7
By:
- Zhuyi Xue;
- Warren, René L.;
- Gibb, Ewan A.;
- MacMillan, Daniel;
- Wong, Johnathan;
- Chiu, Readman;
- Austin Hammond, S.;
- Chen Yang;
- Nip, Ka Ming;
- Ennis, Catherine A.;
- Hahn, Abigail;
- Reynolds, Sheila;
- Birol, Inanc
Publication type:
Article
Automated ordering of fingerprinted clones.
Published in:
Bioinformatics, 2004, v. 20, n. 8, p. 1264, doi. 10.1093/bioinformatics/bth079
By:
- Stephane Flibotte;
- Readman Chiu;
- Chris Fjell;
- Martin Krzywinski;
- Jacqueline E. Schein;
- Heesun Shin;
- Marco A. Marra
Publication type:
Article
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-550
By:
- Swanson, Lucas;
- Robertson, Gordon;
- Mungall, Karen L.;
- Butterfield, Yaron S.;
- Chiu, Readman;
- Corbett, Richard D.;
- Roderick Docking, T.;
- Hogge, Donna;
- Jackman, Shaun D.;
- Moore, Richard A.;
- Mungall, Andrew J.;
- Nip, Ka Ming;
- Parker, Jeremy D. K.;
- Qian, Jenny Qing;
- Raymond, Anthony;
- Sung, Sandy;
- Tam, Angela;
- Thiessen, Nina;
- Varhol, Richard;
- Wang, Sherry
Publication type:
Article
Fusion-Bloom: fusion detection in assembled transcriptomes.
Published in:
Bioinformatics, 2020, v. 36, n. 7, p. 2256, doi. 10.1093/bioinformatics/btz902
By:
- Chiu, Readman;
- Nip, Ka Ming;
- Birol, Inanc
Publication type:
Article

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