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Correction of Arterial-Phase Motion Artifacts in Gadoxetic Acid-Enhanced Liver MRI Using an Innovative Unsupervised Network.
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- Bioengineering (Basel), 2023, v. 10, n. 10, p. 1192, doi. 10.3390/bioengineering10101192
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- Article
Functional annotation of HOT regions in the human genome: implications for human disease and cancer.
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- Scientific Reports, 2015, p. 11633, doi. 10.1038/srep11633
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- Article
An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape.
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- Scientific Reports, 2015, p. 8465, doi. 10.1038/srep08465
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- Article
Mapping nucleolus-associated chromatin interactions using nucleolus Hi-C reveals pattern of heterochromatin interactions.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36021-1
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- Article
CLIC3 interacts with NAT10 to inhibit N4-acetylcytidine modification of p21 mRNA and promote bladder cancer progression.
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- Cell Death & Disease, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41419-023-06373-z
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- Article
The developmental and evolutionary characteristics of transcription factor binding site clustered regions based on an explainable machine learning model.
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- Nucleic Acids Research, 2024, v. 52, n. 13, p. 7610, doi. 10.1093/nar/gkae441
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- Article
Dynamic Interplay between Structural Variations and 3D Genome Organization in Pancreatic Cancer.
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- Advanced Science, 2022, v. 9, n. 18, p. 1, doi. 10.1002/advs.202200818
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- Article
Dynamic Interplay between Structural Variations and 3D Genome Organization in Pancreatic Cancer (Adv. Sci. 18/2022).
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- Advanced Science, 2022, v. 9, n. 18, p. 1, doi. 10.1002/advs.202270113
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- Article
Stratifying TAD boundaries pinpoints focal genomic regions of regulation, damage, and repair.
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- Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae306
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Computational methods for the prediction of chromatin interaction and organization using sequence and epigenomic profiles.
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- Briefings in Bioinformatics, 2021, v. 22, n. 5, p. 1, doi. 10.1093/bib/bbaa405
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Spatial density of open chromatin: an effective metric for the functional characterization of topologically associated domains.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa210
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New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform.
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- Briefings in Bioinformatics, 2020, v. 21, n. 4, p. 1397, doi. 10.1093/bib/bbz072
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- Article
A survey and evaluation of Web-based tools/databases for variant analysis of TCGA data.
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- Briefings in Bioinformatics, 2019, p. 1524, doi. 10.1093/bib/bby023
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Stable H3K4me3 is associated with transcription initiation during early embryo development.
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- Bioinformatics, 2019, v. 35, n. 20, p. 3931, doi. 10.1093/bioinformatics/btz173
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- Article
Dual-Layer Spectral Detector Computed Tomography Quantitative Parameters: A Potential Tool for Lymph Node Activity Determination in Lymphoma Patients.
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- Diagnostics (2075-4418), 2024, v. 14, n. 2, p. 149, doi. 10.3390/diagnostics14020149
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- Article
Comprehensive Identification and Annotation of Cell Type-Specific and Ubiquitous CTCF-Binding Sites in the Human Genome.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0041374
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Biological Responses to Perfluorododecanoic Acid Exposure in Rat Kidneys as Determined by Integrated Proteomic and Metabonomic Studies.
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- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0020862
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Prognosis prediction of icotinib as targeted therapy for advanced EGFR-positive non–small cell lung cancer patients.
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- Investigational New Drugs, 2023, v. 41, n. 3, p. 463, doi. 10.1007/s10637-023-01329-8
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CMTCN: a web tool for investigating cancer-specific microRNA and transcription factor co-regulatory networks.
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- PeerJ, 2018, p. 1, doi. 10.7717/peerj.5951
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An EGFR/HER2-targeted conjugate sensitizes gemcitabine-sensitive and resistant pancreatic cancer through different SMAD4-mediated mechanisms.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33037-x
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- Article
Effectiveness of machine learning at modeling the relationship between Hi‐C data and copy number variation.
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- Quantitative Biology, 2024, v. 12, n. 3, p. 231, doi. 10.1002/qub2.52
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3D genomic organization in cancers.
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- Quantitative Biology, 2023, v. 11, n. 2, p. 109, doi. 10.15302/J-QB-022-0317
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- Article
3DSNP: a database for linking human noncoding SNPs to their three-dimensional interacting genes.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D643, doi. 10.1093/nar/gkw1022
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- Article
Genome-wide analysis of the relationships between DNaseI HS, histone modifications and gene expression reveals distinct modes of chromatin domains.
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- Nucleic Acids Research, 2011, v. 39, n. 17, p. 7428, doi. 10.1093/nar/gkr443
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A comprehensive benchmarking with interpretation and operational guidance for the hierarchy of topologically associating domains.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48593-7
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- Article
The PTM profiling of CTCF reveals the regulation of 3D chromatin structure by O-GlcNAcylation.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47048-3
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- Article
iFORM: Incorporating Find Occurrence of Regulatory Motifs.
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- PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0168607
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Exploring spatially adjacent TFBS-clustered regions with Hi-C data.
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- Bioinformatics, 2017, v. 33, n. 17, p. 2611, doi. 10.1093/bioinformatics/btx282
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- Article
Genome-wide identification and analysis of A-to-I RNA editing events in the malignantly transformed cell lines from bronchial epithelial cell line induced by α-particles radiation.
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- PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0213047
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DeepHiC: A Generative Adversarial Network for Enhancing Hi-C Data Resolution.
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- PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007287
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ARQ-197 enhances the antitumor effect of sorafenib in hepatocellular carcinoma cells via decelerating its intracellular clearance.
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- OncoTargets & Therapy, 2019, v. 12, p. 1629, doi. 10.2147/OTT.S196713
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TimeTalk uses single-cell RNA-seq datasets to decipher cell-cell communication during early embryo development.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05283-2
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- Article
Ablation alone is noninferior to radiotherapy plus ablation in the patients with early-stage hepatocellular carcinoma: a population-based study.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-51436-6
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Guiding post-pancreaticoduodenectomy interventions for pancreatic cancer patients utilizing decision tree models.
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- Frontiers in Oncology, 2024, p. 1, doi. 10.3389/fonc.2024.1399297
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A metabolomic analysis of the toxicity of Aconitum sp. alkaloids in rats using gas chromatography/mass spectrometry.
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- Rapid Communications in Mass Spectrometry: RCM, 2009, v. 23, n. 8, p. 1221, doi. 10.1002/rcm.3992
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