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pi-Turns: types, systematics and the context of their occurrence in protein structures.
- Published in:
- BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-39
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- Article
ProFace: a server for the analysis of the physicochemical features of protein-protein interfaces.
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- BMC Structural Biology, 2006, v. 6, p. 11, doi. 10.1186/1472-6807-6-11
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- Article
Molecular modeling and characterization of Vibrio cholerae transcription regulator HlyU.
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- BMC Structural Biology, 2006, v. 6, p. 1, doi. 10.1186/1472-6807-6-24
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- Article
Antimicrobial potential of a ponericin-like peptide isolated from Bombyx mori L. hemolymph in response to Pseudomonas aeruginosa infection.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19450-8
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- Article
Structural changes in DNA-binding proteins on complexation.
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- Nucleic Acids Research, 2018, v. 46, n. 7, p. 3298, doi. 10.1093/nar/gky170
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- Article
Identification of the target DNA sequence and characterization of DNA binding features of HlyU, and suggestion of a redox switch for hlyA expression in the human pathogen Vibrio cholerae from in silico studies.
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- Nucleic Acids Research, 2015, v. 43, n. 3, p. 1407, doi. 10.1093/nar/gku1319
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- Article
Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7150, doi. 10.1093/nar/gks405
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- Article
Cavities in protein–DNA and protein–RNA interfaces.
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- Nucleic Acids Research, 2009, v. 37, n. 14, p. 4613, doi. 10.1093/nar/gkp488
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- Article
A novel secondary structure based on fused five-membered rings motif.
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- Scientific Reports, 2016, p. 31483, doi. 10.1038/srep31483
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- Article
Effects of Small Molecule Calcium-Activated Chloride Channel Inhibitors on Structure and Function of Accessory Cholera Enterotoxin (Ace) of Vibrio cholerae.
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- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141283
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- Article
The Molecular Basis of Inactivation of Metronidazole-Resistant <i>Helicobacter pylori</i> Using Polyethyleneimine Functionalized Zinc Oxide Nanoparticles.
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- PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0070776
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- Article
Interaction of Virstatin with Human Serum Albumin: Spectroscopic Analysis and Molecular Modeling.
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- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0037468
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- Article
Flexibility in the N-terminal actin-binding domain: Clues from in silico mutations and molecular dynamics.
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- Proteins, 2015, v. 83, n. 4, p. 696, doi. 10.1002/prot.24767
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- Publication type:
- Article
ω-Turn: A novel β-turn mimic in globular proteins stabilized by main-chain to side-chain CH···O interaction.
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- Proteins, 2015, v. 83, n. 2, p. 203, doi. 10.1002/prot.24720
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- Article
A survey of hemoglobin quaternary structures.
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- Proteins, 2011, v. 79, n. 10, p. 2861, doi. 10.1002/prot.23112
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- Article
Dissection, residue conservation, and structural classification of protein-DNA interfaces.
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- Proteins, 2009, v. 74, n. 3, p. 643, doi. 10.1002/prot.22180
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- Article
Interaction geometry involving planar groups in protein-protein interfaces.
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- Proteins, 2007, v. 67, n. 1, p. 84, doi. 10.1002/prot.21244
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- Article
Hydration of protein-protein interfaces.
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- Proteins, 2005, v. 60, n. 1, p. 36, doi. 10.1002/prot.20478
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- Article
Expanded turn conformations: Characterization and sequence-structure correspondence in α-turns with implications in helix folding.
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- Proteins, 2004, v. 55, n. 4, p. 1090, doi. 10.1002/prot.20189
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- Article
Expanded turn conformations: Characterization and sequence-structure correspondence in α-turns with implications in helix folding.
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- Proteins, 2004, v. 55, n. 2, p. 305, doi. 10.1002/prot.20064
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- Article
Dissecting subunit interfaces in homodimeric proteins.
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- Proteins, 2003, v. 53, n. 3, p. 708, doi. 10.1002/prot.10461
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- Article
Variants of 3<sub>10</sub>-helices in proteins.
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- Proteins, 2002, v. 48, n. 3, p. 571, doi. 10.1002/prot.10184
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- Article
Dissecting protein-protein recognition sites.
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- Proteins, 2002, v. 47, n. 3, p. 334, doi. 10.1002/prot.10085
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- Article
Environment of tryptophan side chains in proteins.
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- Proteins, 2000, v. 38, n. 3, p. 288, doi. 10.1002/(SICI)1097-0134(20000215)38:3<288::AID-PROT5>3.0.CO;2-7
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- Article
Estimates of the loss of main-chain conformational entropy of different residues on protein folding.
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- Proteins, 1999, v. 36, n. 3, p. 332, doi. 10.1002/(SICI)1097-0134(19990815)36:3<332::AID-PROT7>3.0.CO;2-H
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- Publication type:
- Article
A multiple antibiotic and serum resistant oligotrophic strain, Klebsiella pneumoniae MB45 having novel dfrA30, is sensitive to ZnO QDs.
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- Annals of Clinical Microbiology & Antimicrobials, 2011, v. 10, n. 1, p. 19, doi. 10.1186/1476-0711-10-19
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- Publication type:
- Article
Push-Pull Butadienes: Evidence for a possible CH...︁S hydrogen bond in 4-(methylthio)-4-nitro-1-(pyrrolidin-1-yl)buta-1,3-diene.
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- Helvetica Chimica Acta, 1997, v. 80, n. 8, p. 2329, doi. 10.1002/hlca.19970800805
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- Article
Conserved residue clusters at protein-proteininterfaces and their use in binding siteidentification.
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- BMC Bioinformatics, 2010, v. 11, p. 286, doi. 10.1186/1471-2105-11-286
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- Article
Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their display.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-103
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- Article
Quantifying the accessible surface area of protein residues in their local environment.
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- Protein Engineering, 2002, v. 15, n. 8, p. 659, doi. 10.1093/protein/15.8.659
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- Article
Aromatic–aromatic interactions in and around α-helices.
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- Protein Engineering, 2002, v. 15, n. 2, p. 91, doi. 10.1093/protein/15.2.91
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- Article
Assessing the role of tryptophan residues in the binding site.
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- Protein Engineering, 2001, v. 14, n. 1, p. 7, doi. 10.1093/protein/14.1.7
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- Article
The effect of zinc oxide nanoparticles on the structure of the periplasmic domain of the Vibrio cholerae ToxR protein.
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- FEBS Journal, 2010, v. 277, n. 20, p. 4184, doi. 10.1111/j.1742-4658.2010.07807.x
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- Article
Cavities and Atomic Packing in Protein Structures and Interfaces.
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- PLoS Computational Biology, 2008, v. 4, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000188
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- Article
Peptide segments in protein-protein interfaces.
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- Journal of Biosciences, 2007, v. 32, n. 1, p. 101, doi. 10.1007/s12038-007-0010-7
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- Article
Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes.
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- Journal of Computer-Aided Molecular Design, 2009, v. 23, n. 9, p. 645, doi. 10.1007/s10822-009-9282-3
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- Publication type:
- Article
Tumor-associated mesenchymal stem cells inhibit naïve T cell expansion by blocking cysteine export from dendritic cells.
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- International Journal of Cancer, 2016, v. 139, n. 9, p. 2068, doi. 10.1002/ijc.30265
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- Publication type:
- Article
3<sub>10</sub>-Helix adjoining α-helix and β-strand: Sequence and structural features and their conservation.
- Published in:
- Biopolymers, 2005, v. 78, n. 3, p. 147, doi. 10.1002/bip.20266
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- Article
On residues in the disallowed region of the Ramachandran map.
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- Biopolymers, 2002, v. 63, n. 3, p. 195, doi. 10.1002/bip.10051
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- Article
Terminal residues in protein chains: Residue preference, conformation, and interaction.
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- Biopolymers, 2000, v. 53, n. 6, p. 467, doi. 10.1002/(SICI)1097-0282(200005)53:6<467::AID-BIP3>3.0.CO;2-9
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- Publication type:
- Article
Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein protein interactions.
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- Bioinformatics, 2007, v. 23, n. 15, p. 1909, doi. 10.1093/bioinformatics/btm274
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- Publication type:
- Article
Enhanced stability of cis Pro-Pro peptide bond in Pro-Pro-Phe sequence motif
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- FEBS Letters, 2007, v. 581, n. 23, p. 4529, doi. 10.1016/j.febslet.2007.08.039
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- Article
An electrophile-nucleophile interaction in metalloprotein structures.
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- Protein Science: A Publication of the Protein Society, 1997, v. 6, n. 4, p. 851, doi. 10.1002/pro.5560060412
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- Article
O‧‧‧C═O interaction, its occurrence and implications for protein structure and folding.
- Published in:
- Proteins, 2022, v. 90, n. 5, p. 1159, doi. 10.1002/prot.26298
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- Publication type:
- Article
Delineation of a new structural motif involving NHN γ‐turn.
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- Proteins, 2020, v. 88, n. 3, p. 431, doi. 10.1002/prot.25820
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- Article
Water and side-chain embedded π-turns.
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- Biopolymers, 2014, v. 101, n. 5, p. 441, doi. 10.1002/bip.22401
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- Publication type:
- Article
Defining the loop structures in proteins based on composite β-turn mimics.
- Published in:
- PEDS: Protein Engineering, Design & Selection, 2015, v. 28, p. 153, doi. 10.1093/protein/gzv017
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- Publication type:
- Article
Defining the loop structures in proteins based on composite β-turn mimics.
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- PEDS: Protein Engineering, Design & Selection, 2015, v. 28, n. 6, p. 153, doi. 10.1093/protein/gzv017
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- Article
Disulfide bonds, their stereospecific environment and conservation in protein structures.
- Published in:
- PEDS: Protein Engineering, Design & Selection, 2004, v. 17, n. 11, p. 795
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- Article
Reassessing buried surface areas in protein-protein complexes.
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- Protein Science: A Publication of the Protein Society, 2013, v. 22, n. 10, p. 1453, doi. 10.1002/pro.2330
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- Article