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Bacterial protein meta-interactomes predict cross-species interactions and protein function.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1585-0
By:
- Caufield, J. Harry;
- Wimble, Christopher;
- Shary, Semarjit;
- Wuchty, Stefan;
- Uetz, Peter
Publication type:
Article
Global landscape of cell envelope protein complexes in Escherichia coli.
Published in:
Nature Biotechnology, 2018, v. 36, n. 1, p. 103, doi. 10.1038/nbt.4024
By:
- Babu, Mohan;
- Bundalovic-Torma, Cedoljub;
- Calmettes, Charles;
- Phanse, Sadhna;
- Zhang, Qingzhou;
- Jiang, Yue;
- Minic, Zoran;
- Kim, Sunyoung;
- Mehla, Jitender;
- Gagarinova, Alla;
- Rodionova, Irina;
- Kumar, Ashwani;
- Guo, Hongbo;
- Kagan, Olga;
- Pogoutse, Oxana;
- Aoki, Hiroyuki;
- Deineko, Viktor;
- Caufield, J Harry;
- Holtzapple, Erik;
- Zhang, Zhongge
Publication type:
Article
Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning.
Published in:
Bioinformatics, 2024, v. 40, n. 3, p. 1, doi. 10.1093/bioinformatics/btae104
By:
- Caufield, J Harry;
- Hegde, Harshad;
- Emonet, Vincent;
- Harris, Nomi L;
- Joachimiak, Marcin P;
- Matentzoglu, Nicolas;
- Kim, HyeongSik;
- Moxon, Sierra;
- Reese, Justin T;
- Haendel, Melissa A;
- Robinson, Peter N;
- Mungall, Christopher J
Publication type:
Article
KG-Hub—building and exchanging biological knowledge graphs.
Published in:
Bioinformatics, 2023, v. 39, n. 7, p. 1, doi. 10.1093/bioinformatics/btad418
By:
- Caufield, J Harry;
- Putman, Tim;
- Schaper, Kevin;
- Unni, Deepak R;
- Hegde, Harshad;
- Callahan, Tiffany J;
- Cappelletti, Luca;
- Moxon, Sierra A T;
- Ravanmehr, Vida;
- Carbon, Seth;
- Chan, Lauren E;
- Cortes, Katherina;
- Shefchek, Kent A;
- Elsarboukh, Glass;
- Balhoff, Jim;
- Fontana, Tommaso;
- Matentzoglu, Nicolas;
- Bruskiewich, Richard M;
- Thessen, Anne E;
- Harris, Nomi L
Publication type:
Article
Specific N-terminal cleavage of ribosomal protein L27 in S taphylococcus aureus and related bacteria.
Published in:
Molecular Microbiology, 2015, v. 95, n. 2, p. 258, doi. 10.1111/mmi.12862
By:
- Wall, Erin A.;
- Caufield, J. Harry;
- Lyons, Charles E.;
- Manning, Keith A.;
- Dokland, Terje;
- Christie, Gail E.
Publication type:
Article
Protein Complexes in Bacteria.
Published in:
PLoS Computational Biology, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004107
By:
- Caufield, J. Harry;
- Abreu, Marco;
- Wimble, Christopher;
- Uetz, Peter
Publication type:
Article
The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D938, doi. 10.1093/nar/gkad1082
By:
- Putman, Tim E;
- Schaper, Kevin;
- Matentzoglu, Nicolas;
- Rubinetti, Vincent P;
- Alquaddoomi, Faisal S;
- Cox, Corey;
- Caufield, J Harry;
- Elsarboukh, Glass;
- Gehrke, Sarah;
- Hegde, Harshad;
- Reese, Justin T;
- Braun, Ian;
- Bruskiewich, Richard M;
- Cappelletti, Luca;
- Carbon, Seth;
- Caron, Anita R;
- Chan, Lauren E;
- Chute, Christopher G;
- Cortes, Katherina G;
- De Souza, Vinícius
Publication type:
Article
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.
Published in:
CTS: Clinical & Translational Science, 2022, v. 15, n. 8, p. 1848, doi. 10.1111/cts.13302
By:
- Unni, Deepak R.;
- Moxon, Sierra A. T.;
- Bada, Michael;
- Brush, Matthew;
- Bruskiewich, Richard;
- Caufield, J. Harry;
- Clemons, Paul A.;
- Dancik, Vlado;
- Dumontier, Michel;
- Fecho, Karamarie;
- Glusman, Gustavo;
- Hadlock, Jennifer J.;
- Harris, Nomi L.;
- Joshi, Arpita;
- Putman, Tim;
- Qin, Guangrong;
- Ramsey, Stephen A.;
- Shefchek, Kent A.;
- Solbrig, Harold;
- Soman, Karthik
Publication type:
Article

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