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Structural Variations Affecting Genes and Transposable Elements of Chromosome 3B in Wheats.
Published in:
Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.00891
By:
- De Oliveira, Romain;
- Rimbert, Hélène;
- Balfourier, François;
- Kitt, Jonathan;
- Dynomant, Emeric;
- Vrána, Jan;
- Doležel, Jaroslav;
- Cattonaro, Federica;
- Paux, Etienne;
- Choulet, Frédéric
Publication type:
Article
The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing.
Published in:
Journal of Experimental Botany, 2016, v. 67, n. 21, p. 5961, doi. 10.1093/jxb/erw350
By:
- Royer, Mathilde;
- Cohen, David;
- Aubry, Nathalie;
- Vendramin, Vera;
- Scalabrin, Simone;
- Cattonaro, Federica;
- Bogeat-Triboulot, Marie-Béatrice;
- Hummel, Irène
Publication type:
Article
A knowledge base for Vitis vinifera functional analysis.
Published in:
BMC Systems Biology, 2015, v. 9 Suppl 3, p. 1, doi. 10.1186/1752-0509-9-S3-S5
By:
- Pulvirenti, Alfredo;
- Giugno1, Rosalba;
- Distefano, Rosario;
- Pigola, Giuseppe;
- Mongiovi, Misael;
- Giudice, Girolamo;
- Vendramin, Vera;
- Lombardo, Alessandro;
- Cattonaro, Federica;
- Ferro, Alfredo
Publication type:
Article
Assembly and Annotation of Red Spruce (Picea rubens) Chloroplast Genome, Identification of Simple Sequence Repeats, and Phylogenetic Analysis in Picea.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 23, p. 15243, doi. 10.3390/ijms232315243
By:
- Parmar, Rajni;
- Cattonaro, Federica;
- Phillips, Carrie;
- Vassiliev, Serguei;
- Morgante, Michele;
- Rajora, Om P.
Publication type:
Article
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.
Published in:
Nature Biotechnology, 2014, v. 32, n. 7, p. 656, doi. 10.1038/nbt.2906
By:
- Wu, G Albert;
- Prochnik, Simon;
- Jenkins, Jerry;
- Salse, Jerome;
- Hellsten, Uffe;
- Murat, Florent;
- Perrier, Xavier;
- Ruiz, Manuel;
- Scalabrin, Simone;
- Terol, Javier;
- Takita, Marco Aurélio;
- Labadie, Karine;
- Poulain, Julie;
- Couloux, Arnaud;
- Jabbari, Kamel;
- Cattonaro, Federica;
- Del Fabbro, Cristian;
- Pinosio, Sara;
- Zuccolo, Andrea;
- Chapman, Jarrod
Publication type:
Article
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
Published in:
Nature Genetics, 2013, v. 45, n. 5, p. 487, doi. 10.1038/ng.2586
By:
- Verde, Ignazio;
- Abbott, Albert G;
- Scalabrin, Simone;
- Jung, Sook;
- Shu, Shengqiang;
- Marroni, Fabio;
- Zhebentyayeva, Tatyana;
- Dettori, Maria Teresa;
- Grimwood, Jane;
- Cattonaro, Federica;
- Zuccolo, Andrea;
- Rossini, Laura;
- Jenkins, Jerry;
- Vendramin, Elisa;
- Meisel, Lee A;
- Decroocq, Veronique;
- Sosinski, Bryon;
- Prochnik, Simon;
- Mitros, Therese;
- Policriti, Alberto
Publication type:
Article
Large-scale detection of rare variants via pooled multiplexed next-generation sequencing: towards next-generation Ecotilling.
Published in:
Plant Journal, 2011, v. 67, n. 4, p. 736, doi. 10.1111/j.1365-313X.2011.04627.x
By:
- Marroni, Fabio;
- Pinosio, Sara;
- Di Centa, Eleonora;
- Jurman, Irena;
- Boerjan, Wout;
- Felice, Nicoletta;
- Cattonaro, Federica;
- Morgante, Michele
Publication type:
Article
A Physical Map of the Short Arm of Wheat Chromosome 1A.
Published in:
PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0080272
By:
- Breen, James;
- Wicker, Thomas;
- Shatalina, Margarita;
- Frenkel, Zeev;
- Bertin, Isabelle;
- Philippe, Romain;
- Spielmeyer, Wolfgang;
- Šimková, Hana;
- Šafář, Jan;
- Cattonaro, Federica;
- Scalabrin, Simone;
- Magni, Federica;
- Vautrin, Sonia;
- Bergès, Hélène;
- Paux, Etienne;
- Fahima, Tzion;
- Doležel, Jaroslav;
- Korol, Abraham;
- Feuillet, Catherine;
- Keller, Beat
Publication type:
Article
Physical Mapping Integrated with Syntenic Analysis to Characterize the Gene Space of the Long Arm of Wheat Chromosome 1A.
Published in:
PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0059542
By:
- Lucas, Stuart J.;
- Akpınar, Bala Anı;
- Kantar, Melda;
- Weinstein, Zohar;
- Aydınoğlu, Fatma;
- Šafář, Jan;
- Šimková, Hana;
- Frenkel, Zeev;
- Korol, Abraham;
- Magni, Federica;
- Cattonaro, Federica;
- Vautrin, Sonia;
- Bellec, Arnaud;
- Bergès, Hélène;
- Doležel, Jaroslav;
- Budak, Hikmet
Publication type:
Article
Origin and Spread of Bos taurus: New Clues from Mitochondrial Genomes Belonging to Haplogroup T1.
Published in:
PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038601
By:
- Bonfiglio, Silvia;
- Ginja, Catarina;
- De Gaetano, Anna;
- Achilli, Alessandro;
- Olivieri, Anna;
- Colli, Licia;
- Tesfaye, Kassahun;
- Agha, Saif Hassan;
- Gama, Luis T.;
- Cattonaro, Federica;
- Penedo, M. Cecilia T;
- Ajmone-Marsan, Paolo;
- Torroni, Antonio;
- Ferretti, Luca
Publication type:
Article
Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm.
Published in:
PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035668
By:
- Verde, Ignazio;
- Bassil, Nahla;
- Scalabrin, Simone;
- Gilmore, Barbara;
- Lawley, Cynthia T.;
- Gasic, Ksenija;
- Micheletti, Diego;
- Rosyara, Umesh R.;
- Cattonaro, Federica;
- Vendramin, Elisa;
- Main, Dorrie;
- Aramini, Valeria;
- Blas, Andrea L.;
- Mockler, Todd C.;
- Bryant, Douglas W.;
- Wilhelm, Larry;
- Troggio, Michela;
- Sosinski, Bryon;
- Aranzana, Maria José;
- Arús, Pere
Publication type:
Article
High-throughput physical map anchoring via BAC-pool sequencing.
Published in:
BMC Plant Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12870-015-0429-1
By:
- Cviková, Katerina;
- Cattonaro, Federica;
- Alaux, Michael;
- Stein, Nils;
- Mayer, Klaus F. X.;
- Doležel, Jaroslav;
- Bartoš, Jan
Publication type:
Article
Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat.
Published in:
BMC Plant Biology, 2012, v. 12, n. 1, p. 155, doi. 10.1186/1471-2229-12-155
By:
- Bartoš, Jan;
- Vlček, Čestmír;
- Choulet, Fr‚d‚ric;
- Džunková, M ria;
- Cviková, Kateřina;
- Šafář, Jan;
- Šimková, Hana;
- Pačes, Jan;
- Strnad, Hynek;
- Sourdille, Pierre;
- BergŠs, H‚lŠne;
- Cattonaro, Federica;
- Feuillet, Catherine;
- Doležel, Jaroslav
Publication type:
Article
Functional features of a single chromosome arm in wheat (1AL) determined from its structure.
Published in:
Functional & Integrative Genomics, 2012, v. 12, n. 1, p. 173, doi. 10.1007/s10142-011-0250-3
By:
- Lucas, Stuart;
- Šimková, Hana;
- Šafář, Jan;
- Jurman, Irena;
- Cattonaro, Federica;
- Vautrin, Sonia;
- Bellec, Arnaud;
- Berges, Hélène;
- Doležel, Jaroslav;
- Budak, Hikmet
Publication type:
Article
Single primer enrichment technology as a tool for massive genotyping: a benchmark on black poplar and maize.
Published in:
Annals of Botany, 2019, v. 124, n. 4, p. 543, doi. 10.1093/aob/mcz054
By:
- Scaglione, Davide;
- Pinosio, Sara;
- Marroni, Fabio;
- Centa, Eleonora Di;
- Fornasiero, Alice;
- Magris, Gabriele;
- Scalabrin, Simone;
- Cattonaro, Federica;
- Taylor, Gail;
- Morgante, Michele
Publication type:
Article
De novo assembly, functional annotation, and analysis of the giant reed (Arundo donax L.) leaf transcriptome provide tools for the development of a biofuel feedstock.
Published in:
Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0828-7
By:
- Evangelistella, Chiara;
- Valentini, Alessio;
- Ludovisi, Riccardo;
- Firrincieli, Andrea;
- Fabbrini, Francesco;
- Scalabrin, Simone;
- Cattonaro, Federica;
- Morgante, Michele;
- Mugnozza, Giuseppe Scarascia;
- Keurentjes, Joost J. B.;
- Harfouche, Antoine
Publication type:
Article
Characterization of the Poplar Pan-Genome by Genome-Wide Identification of Structural Variation.
Published in:
Molecular Biology & Evolution, 2016, v. 33, n. 10, p. 2706, doi. 10.1093/molbev/msw161
By:
- Pinosio, Sara;
- Giacomello, Stefania;
- Faivre-Rampant, Patricia;
- Taylor, Gail;
- Jorge, Veronique;
- Le Paslier, Marie Christine;
- Zaina, Giusi;
- Bastien, Catherine;
- Cattonaro, Federica;
- Marroni, Fabio;
- Morgante, Michele
Publication type:
Article
A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61216-7
By:
- Scalabrin, Simone;
- Toniutti, Lucile;
- Di Gaspero, Gabriele;
- Scaglione, Davide;
- Magris, Gabriele;
- Vidotto, Michele;
- Pinosio, Sara;
- Cattonaro, Federica;
- Magni, Federica;
- Jurman, Irena;
- Cerutti, Mario;
- Suggi Liverani, Furio;
- Navarini, Luciano;
- Del Terra, Lorenzo;
- Pellegrino, Gloria;
- Ruosi, Manuela Rosanna;
- Vitulo, Nicola;
- Valle, Giorgio;
- Pallavicini, Alberto;
- Graziosi, Giorgio
Publication type:
Article
Analysis of transposons and repeat composition of the sunflower ( Helianthus annuus L.) genome.
Published in:
Theoretical & Applied Genetics, 2010, v. 120, n. 3, p. 491, doi. 10.1007/s00122-009-1170-7
By:
- Cavallini, Andrea;
- Natali, Lucia;
- Zuccolo, Andrea;
- Giordani, Tommaso;
- Jurman, Irena;
- Ferrillo, Veronica;
- Vitacolonna, Nicola;
- Sarri, Vania;
- Cattonaro, Federica;
- Ceccarelli, Marilena;
- Cionini, Pier Giorgio;
- Morgante, Michele
Publication type:
Article
Genes and gene clusters related to genotype and drought-induced variation in saccharification potential, lignin content and wood anatomical traits in Populus nigra.
Published in:
Tree Physiology, 2018, v. 38, n. 3, p. 320, doi. 10.1093/treephys/tpx054
By:
- Wildhagen, Henning;
- Paul, Shanty;
- Allwright, Mike;
- Smith, Hazel K;
- Malinowska, Marta;
- Schnabel, Sabine K;
- Paulo, M João;
- Cattonaro, Federica;
- Vendramin, Vera;
- Scalabrin, Simone
Publication type:
Article
Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0716-z
By:
- Dell'Acqua, Matteo;
- Gatti, Daniel M.;
- Pea, Giorgio;
- Cattonaro, Federica;
- Coppens, Frederik;
- Magris, Gabriele;
- Hlaing, Aye L.;
- Aung, Htay H.;
- Nelissen, Hilde;
- Baute, Joke;
- Frascaroli, Elisabetta;
- Churchill, Gary A.;
- Inzé, Dirk;
- Morgante, Michele;
- Pè, Mario Enrico
Publication type:
Article
A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat.
Published in:
Genome Biology, 2013, v. 14, n. 6, p. 1, doi. 10.1186/gb-2013-14-6-r64
By:
- Philippe, Romain;
- Paux, Etienne;
- Bertin, Isabelle;
- Sourdille, Pierre;
- Choulet, Fréderic;
- Laugier, Christel;
- Šimková, Hana;
- Šafář, Jan;
- Bellec, Arnaud;
- Vautrin, Sonia;
- Frenkel, Zeev;
- Cattonaro, Federica;
- Magni, Federica;
- Scalabrin, Simone;
- Martis, Mihaela M.;
- Mayer, Klaus F.X.;
- Korol, Abraham;
- Bergès, Hélène;
- Doležel, Jaroslav;
- Feuillet, Catherine
Publication type:
Article
The physical map of wheat chromosome 1BS provides insights into its gene space organization and evolution.
Published in:
Genome Biology, 2013, v. 14, n. 12, p. 122, doi. 10.1186/gb-2013-14-12-r138
By:
- Raats, Dina;
- Frenkel, Zeev;
- Krugman, Tamar;
- Dodek, Itay;
- Sela, Hanan;
- ¿imková, Hana;
- Magni, Federica;
- Cattonaro, Federica;
- Vautrin, Sonia;
- Bergès, Hélène;
- Wicker, Thomas;
- Keller, Beat;
- Leroy, Philippe;
- Philippe, Romain;
- Paux, Etienne;
- Dole¿el, Jaroslav;
- Feuillet, Catherine;
- Korol, Abraham;
- Fahima, Tzion
Publication type:
Article
The Peculiar Landscape of Repetitive Sequences in the Olive (Olea europaea L.) Genome.
Published in:
Genome Biology & Evolution, 2014, v. 6, n. 4, p. 776, doi. 10.1093/gbe/evu058
By:
- Barghini, Elena;
- Natali, Lucia;
- Cossu, Rosa Maria;
- Giordani, Tommaso;
- Pindo, Massimo;
- Cattonaro, Federica;
- Scalabrin, Simone;
- Velasco, Riccardo;
- Morgante, Michele;
- Cavallini, Andrea
Publication type:
Article
Synergistic Parasite-Pathogen Interactions Mediated by Host Immunity Can Drive the Collapse of Honeybee Colonies.
Published in:
PLoS Pathogens, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.ppat.1002735
By:
- Nazzi, Francesco;
- Brown, Sam P.;
- Annoscia, Desiderato;
- Del Piccolo, Fabio;
- Di Prisco, Gennaro;
- Varricchio, Paola;
- Della Vedova, Giorgio;
- Cattonaro, Federica;
- Caprio, Emilio;
- Pennacchio, Francesco
Publication type:
Article
Odorant-binding proteins and olfactory coding in the solitary bee Osmia cornuta.
Published in:
Cellular & Molecular Life Sciences, 2013, v. 70, n. 16, p. 3029, doi. 10.1007/s00018-013-1308-2
By:
- Yin, Xue-Wei;
- Iovinella, Immacolata;
- Marangoni, Roberto;
- Cattonaro, Federica;
- Flamini, Guido;
- Sagona, Simona;
- Zhang, Long;
- Pelosi, Paolo;
- Felicioli, Antonio
Publication type:
Article
A multiscale approach to detect selection in nonmodel tree species: Widespread adaptation despite population decline in Taxus baccata L.
Published in:
Evolutionary Applications, 2020, v. 13, n. 1, p. 143, doi. 10.1111/eva.12838
By:
- Mayol, Maria;
- Riba, Miquel;
- Cavers, Stephen;
- Grivet, Delphine;
- Vincenot, Lucie;
- Cattonaro, Federica;
- Vendramin, Giovanni G.;
- González‐Martínez, Santiago C.
Publication type:
Article
Flow Sorting and Sequencing Meadow Fescue Chromosome 4F<sup>1[C][w]</sup>.
Published in:
Plant Physiology, 2013, v. 163, n. 3, p. 1323, doi. 10.1104/pp.113.224105
By:
- Kopecký, David;
- Martis, Mihaela;
- Číhalíková, Jarmila;
- Hríbová, Eva;
- Vrána, Jan;
- Bartoš, Jan;
- Kopecká, Jitka;
- Cattonaro, Federica;
- Stočes, Stèpán;
- Novák, Petr;
- Neumann, Pavel;
- Macas, Jiří;
- Šimková, Hana;
- Studer, Bruno;
- Asp, Torben;
- Baird, James H.;
- Navrátil, Petr;
- Karafiátová, Miroslava;
- Kubaláková, Marie;
- Šafár, Jan
Publication type:
Article
A 3,000-Loci Transcription Map of Chromosome 3B Unravels the Structural and Functional Features of Gene Islands in Hexaploid Wheat.
Published in:
Plant Physiology, 2011, v. 157, n. 4, p. 1596, doi. 10.1104/pp.111.183921
By:
- Rustenholz, Camille;
- Choulet, Frédéric;
- Laugier, Christel;
- Šafář, Jan;
- Šimková, Hana;
- Doležel, Jaroslav;
- Magni, Federica;
- Scalabrin, Simone;
- Cattonaro, Federica;
- Vautrin, Sonia;
- Bellec, Arnaud;
- Bergès, Hélène;
- Feuillet, Catherine;
- Paux, Etienne
Publication type:
Article
Evolutionary relevance of lineages in the European black pine (Pinus nigra) in the transcriptomic era.
Published in:
Tree Genetics & Genomes, 2020, v. 16, n. 2, p. 1, doi. 10.1007/s11295-020-1424-8
By:
- Olsson, Sanna;
- Grivet, Delphine;
- Cattonaro, Federica;
- Vendramin, Vera;
- Giovannelli, Guia;
- Scotti-Saintagne, Caroline;
- Vendramin, Giovanni G.;
- Fady, Bruno
Publication type:
Article
Genomic tools for durum wheat breeding: de novo assembly of Svevo transcriptome and SNP discovery in elite germplasm.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-5645-x
By:
- Vendramin, Vera;
- Ormanbekova, Danara;
- Scalabrin, Simone;
- Scaglione, Davide;
- Maccaferri, Marco;
- Martelli, Pierluigi;
- Salvi, Silvio;
- Jurman, Irena;
- Casadio, Rita;
- Cattonaro, Federica;
- Tuberosa, Roberto;
- Massi, Andrea;
- Morgante, Michele
Publication type:
Article
Genomic Resources Notes Accepted 1 October 2014-30 November 2014.
Published in:
Molecular Ecology Resources, 2015, v. 15, n. 2, p. 458, doi. 10.1111/1755-0998.12368
By:
- Baratti, Mariella;
- Cattonaro, Federica;
- Di Lorenzo, Tiziana;
- Galassi, Diana Maria Paola;
- Iannilli, Valentina;
- Iannucci, Alessio;
- Jensen, Just;
- Larsen, Peter Foged;
- Nielsen, Rasmus O.;
- Pertoldi, Cino;
- Postolache, Dragos;
- Pujolar, Jose Martin;
- Randi, Ettore;
- Ruiz‐Gonzalez, Aritz;
- Thirstrup, Janne Pia;
- Vendramin, Giovanni Giuseppe;
- Zalewski, Andrzej
Publication type:
Article
The microbiota of hematophagous ectoparasites collected from migratory birds.
Published in:
PLoS ONE, 2018, v. 13, n. 8, p. 1, doi. 10.1371/journal.pone.0202270
By:
- Cerutti, Francesco;
- Modesto, Paola;
- Rizzo, Francesca;
- Cravero, Alessandra;
- Jurman, Irena;
- Costa, Stefano;
- Giammarino, Mauro;
- Mandola, Maria Lucia;
- Goria, Mariella;
- Radovic, Slobodanka;
- Cattonaro, Federica;
- Acutis, Pier Luigi;
- Peletto, Simone
Publication type:
Article
The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1641-y
By:
- Akpinar, Bala Ani;
- Magni, Federica;
- Yuce, Meral;
- Lucas, Stuart J.;
- Šimková, Hana;
- Šafář, Jan;
- Vautrin, Sonia;
- Bergès, Hélène;
- Cattonaro, Federica;
- Doležel, Jaroslav;
- Budak, Hikmet
Publication type:
Article
The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 453, doi. 10.1186/s12864-015-1641-y
By:
- Akpinar, Bala Ani;
- Magni, Federica;
- Yuce, Meral;
- Lucas, Stuart J.;
- Hana Šimková;
- Jan Šafář;
- Vautrin, Sonia;
- Bergès, Hélène;
- Cattonaro, Federica;
- Jaroslav Doležel;
- Hikmet Budak
Publication type:
Article
LTR retrotransposon dynamics in the evolution of the olive (Olea europaea) genome.
Published in:
DNA Research, 2015, v. 22, n. 1, p. 91, doi. 10.1093/dnares/dsu042
By:
- Barghini, Elena;
- Natali, Lucia;
- Giordani, Tommaso;
- Cossu, Rosa Maria;
- Scalabrin, Simone;
- Cattonaro, Federica;
- Šimková, Hana;
- Vrána, Jan;
- Doležel, Jaroslav;
- Morgante, Michele;
- Cavallini, Andrea
Publication type:
Article

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