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A comprehensive spectral assay library to quantify the Escherichia coli proteome by DIA/SWATH-MS.
Published in:
Scientific Data, 2020, v. 7, n. 1, p. N.PAG, doi. 10.1038/s41597-020-00724-7
By:
- Midha, Mukul K.;
- Kusebauch, Ulrike;
- Shteynberg, David;
- Kapil, Charu;
- Bader, Samuel L.;
- Reddy, Panga Jaipal;
- Campbell, David S.;
- Baliga, Nitin S.;
- Moritz, Robert L.
Publication type:
Article
An open-source computational and data resource to analyze digital maps of immunopeptidomes.
Published in:
eLife, 2015, p. 1, doi. 10.7554/eLife.07661
By:
- Caron, Etienne;
- Espona, Lucia;
- Kowalewski, Daniel J.;
- Schuster, Heiko;
- Ternette, Nicola;
- Alpízar, Adán;
- Schittenhelm, Ralf B.;
- Ramarathinam, Sri H.;
- Lindestam Arlehamn, Cecilia S.;
- Ching Chiek Koh;
- Gillet, Ludovic C.;
- Rabsteyn, Armin;
- Navarro, Pedro;
- Sangtae Kim;
- Lam, Henry;
- Sturm, Theo;
- Marcilla, Miguel;
- Sette, Alessandro;
- Campbell, David S.;
- Deutsch, Eric W.
Publication type:
Article
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D1100, doi. 10.1093/nar/gkw936
By:
- Deutsch, Eric W.;
- Csordas, Attila;
- Zhi Sun;
- Jarnuczak, Andrew;
- Perez-Riverol, Yasset;
- Ternent, Tobias;
- Campbell, David S.;
- Bernal-Llinares, Manuel;
- Shujiro Okuda;
- Shin Kawano;
- Moritz, Robert L.;
- Carver, Jeremy J.;
- Mingxun Wang;
- Yasushi Ishihama;
- Bandeira, Nuno;
- Hermjakob, Henning;
- Vizcaíno, Juan Antonio
Publication type:
Article
Discovering and linking public omics data sets using the Omics Discovery Index.
Published in:
Nature Biotechnology, 2017, v. 35, n. 5, p. 406, doi. 10.1038/nbt.3790
By:
- Perez-Riverol, Yasset;
- Bai, Mingze;
- da Veiga Leprevost, Felipe;
- Squizzato, Silvano;
- Park, Young Mi;
- Haug, Kenneth;
- Carroll, Adam J;
- Spalding, Dylan;
- Paschall, Justin;
- Wang, Mingxun;
- del-Toro, Noemi;
- Ternent, Tobias;
- Zhang, Peng;
- Buso, Nicola;
- Bandeira, Nuno;
- Deutsch, Eric W;
- Campbell, David S;
- Beavis, Ronald C;
- Salek, Reza M;
- Sarkans, Ugis
Publication type:
Article
The urologic epithelial stem cell database (UESC) -- a web tool for cell type-specific gene expression and immunohistochemistry images of the prostate and bladder.
Published in:
BMC Urology, 2007, v. 7, p. 19, doi. 10.1186/1471-2490-7-19
By:
- Pascal, Laura E.;
- Deutsch, Eric W.;
- Campbell, David S.;
- Korb, Martin;
- True, Lawrence D.;
- Liu, Alvin Y.
Publication type:
Article
PASSEL: The Peptide Atlas SRMexperiment library.
Published in:
Proteomics, 2012, v. 12, n. 8, p. 1170, doi. 10.1002/pmic.201100515
By:
- Farrah, Terry;
- Deutsch, Eric W.;
- Kreisberg, Richard;
- Sun, Zhi;
- Campbell, David S.;
- Mendoza, Luis;
- Kusebauch, Ulrike;
- Brusniak, Mi-Youn;
- Hüttenhain, Ruth;
- Schiess, Ralph;
- Selevsek, Nathalie;
- Aebersold, Ruedi;
- Moritz, Robert L.
Publication type:
Article
Correlation of mRNA and protein levels: Cell type-specific gene expression of cluster designation antigens in the prostate.
Published in:
BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-246
By:
- Pascal, Laura E.;
- True, Lawrence D.;
- Campbell, David S.;
- Deutsch, Eric W.;
- Risk, Michael;
- Coleman, Ilsa M.;
- Eichner, Lillian J.;
- Nelson, Peter S.;
- Liu, Alvin Y.
Publication type:
Article
A comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS.
Published in:
Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02590-5
By:
- Kusebauch, Ulrike;
- Lorenzetti, Alan P. R.;
- Campbell, David S.;
- Pan, Min;
- Shteynberg, David;
- Kapil, Charu;
- Midha, Mukul K.;
- López García de Lomana, Adrián;
- Baliga, Nitin S.;
- Moritz, Robert L.
Publication type:
Article
Circulating 25-Hydroxyvitamin D and Risk of Kidney Cancer.
Published in:
American Journal of Epidemiology, 2010, v. 172, n. 1, p. 47, doi. 10.1093/aje/kwq115
By:
- Gallicchio, Lisa;
- Moore, Lee E.;
- Stevens, Victoria L.;
- Ahn, Jiyoung;
- Albanes, Demetrius;
- Hartmuller, Virginia;
- Setiawan, V. Wendy;
- Helzlsouer, Kathy J.;
- Gong Yang;
- Yong-Bing Xiang;
- Xiao-Ou Shu;
- Snyder, Kirk;
- Weinstein, Stephanie J.;
- Kai Yu;
- Zeleniuch-Jacquotte, Anne;
- Wei Zheng;
- Qiuyin Cai;
- Campbell, David S.;
- Yu Chen;
- Wong-Ho Chow
Publication type:
Article
Circulating 25-Hydroxyvitamin D and Risk of Esophageal and Gastric Cancer.
Published in:
American Journal of Epidemiology, 2010, v. 172, n. 1, p. 94, doi. 10.1093/aje/kwq121
By:
- Abnet, Christian C.;
- Yu Chen;
- Wong-Ho Chow;
- Yu-Tang Gao;
- Helzlsouer, Kathy J.;
- Le Marchand, Loïc;
- McCullough, Marjorie L.;
- Shikany, James M.;
- Virtamo, Jarmo;
- Weinstein, Stephanie J.;
- Yong-Bing Xiang;
- Kai Yu;
- Wei Zheng;
- Albanes, Demetrius;
- Arslan, Alan A.;
- Campbell, David S.;
- Campbell, Peter T.;
- Hayes, Richard B.;
- Horst, Ronald L.;
- Kolonel, Laurence N.
Publication type:
Article
A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis.
Published in:
Nature, 2013, v. 494, n. 7436, p. 266, doi. 10.1038/nature11835
By:
- Picotti, Paola;
- Clément-Ziza, Mathieu;
- Lam, Henry;
- Campbell, David S.;
- Schmidt, Alexander;
- Deutsch, Eric W.;
- Röst, Hannes;
- Sun, Zhi;
- Rinner, Oliver;
- Reiter, Lukas;
- Shen, Qin;
- Michaelson, Jacob J.;
- Frei, Andreas;
- Alberti, Simon;
- Kusebauch, Ulrike;
- Wollscheid, Bernd;
- Moritz, Robert L.;
- Beyer, Andreas;
- Aebersold, Ruedi
Publication type:
Article
DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-18901-y
By:
- Midha, Mukul K.;
- Campbell, David S.;
- Kapil, Charu;
- Kusebauch, Ulrike;
- Hoopmann, Michael R.;
- Bader, Samuel L.;
- Moritz, Robert L.
Publication type:
Article
An integrated transcriptomics-guided genomewide promoter analysis and next-generation proteomics approach to mine factor(s) regulating cellular differentiation.
Published in:
DNA Research, 2017, v. 24, n. 2, p. 143, doi. 10.1093/dnares/dsw057
By:
- Mandal, Kamal;
- Bader, Samuel L.;
- Kumar, Pankaj;
- Malakar, Dipankar;
- Campbell, David S.;
- Pradhan, Bhola Shankar;
- Sarkar, Rajesh K.;
- Wadhwa, Neerja;
- Sensharma, Souvik;
- Jain, Vaibhav;
- Moritz, Robert L.;
- Majumdar, Subeer S.
Publication type:
Article

Found: 13