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Cell type-specific transcriptomics identifies neddylation as a novel therapeutic target in multiple sclerosis.
Published in:
2021
By:
- Kim, Kicheol;
- Pröbstel, Anne-Katrin;
- Baumann, Ryan;
- Dyckow, Julia;
- Landefeld, James;
- Kogl, Elva;
- Madireddy, Lohith;
- Loudermilk, Rita;
- Eggers, Erica L;
- Singh, Sneha;
- Caillier, Stacy J;
- Hauser, Stephen L;
- Cree, Bruce A C;
- Team, UCSF MS-EPIC;
- Schirmer, Lucas;
- Wilson, Michael R;
- Baranzini, Sergio E;
- UCSF MS-EPIC Team
Publication type:
journal article
An ImmunoChip study of multiple sclerosis risk in African Americans.
Published in:
2015
By:
- Isobe, Noriko;
- Madireddy, Lohith;
- Khankhanian, Pouya;
- Matsushita, Takuya;
- Caillier, Stacy J;
- Moré, Jayaji M;
- Gourraud, Pierre-Antoine;
- McCauley, Jacob L;
- Beecham, Ashley H;
- Piccio, Laura;
- Herbert, Joseph;
- Khan, Omar;
- Cohen, Jeffrey;
- Stone, Lael;
- Santaniello, Adam;
- Cree, Bruce A C;
- Onengut-Gumuscu, Suna;
- Rich, Stephen S;
- Hauser, Stephen L;
- Sawcer, Stephen
Publication type:
journal article
Interleukin 7 receptor α chain (IL7R) shows allelic and functional association with multiple sclerosis.
Published in:
Nature Genetics, 2007, v. 39, n. 9, p. 1083, doi. 10.1038/ng2103
By:
- Gregory, Simon G.;
- Schmidt, Silke;
- Seth, Puneet;
- Oksenberg, Jorge R.;
- Hart, John;
- Prokop, Angela;
- Caillier, Stacy J.;
- Ban, Maria;
- Goris, An;
- Barcellos, Lisa F.;
- Lincoln, Robin;
- McCauley, Jacob L.;
- Sawcer, Stephen J.;
- Compston, D. A. S.;
- Dubois, Benedicte;
- Hauser, Stephen L.;
- Garcia-Blanco, Mariano A.;
- Pericak-Vance, Margaret A.;
- Haines, Jonathan L.
Publication type:
Article
Household paired design reduces variance and increases power in multi-city gut microbiome study in multiple sclerosis.
Published in:
Multiple Sclerosis Journal, 2021, v. 27, n. 3, p. 366, doi. 10.1177/1352458520924594
By:
- Zhou, Xiaoyuan;
- Singh, Sneha;
- Baumann, Ryan;
- Barba, Patrick;
- Landefeld, James;
- Casaccia, Patrizia;
- Sand, Ilana Katz;
- Xia, Zongqi;
- Weiner, Howard;
- Chitnis, Tanuja;
- Chandran, Siddharthan;
- Connick, Peter;
- Otaegui, David;
- Castillo-Triviño, Tamara;
- Caillier, Stacy J.;
- Santaniello, Adam;
- Ackermann, Gail;
- Humphrey, Greg;
- Negrotto, Laura;
- Farez, Mauricio
Publication type:
Article
Deconstruction of HLA-DRB1*04:01:01 and HLA-DRB1*15:01:01 class II haplotypes using next-generation sequencing in European-Americans with multiple sclerosis.
Published in:
Multiple Sclerosis Journal, 2019, v. 25, n. 6, p. 772, doi. 10.1177/1352458518770019
By:
- Creary, Lisa E;
- Mallempati, Kalyan C;
- Gangavarapu, Sridevi;
- Caillier, Stacy J;
- Oksenberg, Jorge R;
- Fernández-Viňa, Marcelo A
Publication type:
Article
Prognostic biomarkers of IFNb therapy in multiple sclerosis patients.
Published in:
Multiple Sclerosis Journal, 2015, v. 21, n. 7, p. 894, doi. 10.1177/1352458514555786
By:
- Baranzini, Sergio E;
- Madireddy, Lohith R;
- Cromer, Anne;
- D’Antonio, Mauro;
- Lehr, Lorenz;
- Beelke, Manolo;
- Farmer, Pierre;
- Battaglini, Marco;
- Caillier, Stacy J;
- Stromillo, Maria L;
- De Stefano, Nicola;
- Monnet, Emmanuel;
- Cree, Bruce AC
Publication type:
Article
Oligoclonal bands and age at onset correlate with genetic risk score in multiple sclerosis.
Published in:
Multiple Sclerosis Journal, 2014, v. 20, n. 6, p. 660, doi. 10.1177/1352458513506503
By:
- Harbo, Hanne F;
- Isobe, Noriko;
- Berg-Hansen, Pål;
- Bos, Steffan D;
- Caillier, Stacy J;
- Gustavsen, Marte W;
- Mero, Inger-Lise;
- Celius, Elisabeth Gulowsen;
- Hauser, Stephen L;
- Oksenberg, Jorge R;
- Gourraud, Pierre-Antoine
Publication type:
Article
SNP imputation bias reduces effect size determination.
Published in:
Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2015.00030
By:
- Khankhanian, Pouya;
- Din, Lennox;
- Caillier, Stacy J.;
- Gourraud, Pierre-Antoine;
- Baranzini, Sergio E.
Publication type:
Article
Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis.
Published in:
Nature, 2010, v. 464, n. 7293, p. 1351, doi. 10.1038/nature08990
By:
- Baranzini, Sergio E.;
- Mudge, Joann;
- van Velkinburgh, Jennifer C.;
- Khankhanian, Pouya;
- Khrebtukova, Irina;
- Miller, Neil A.;
- Zhang, Lu;
- Farmer, Andrew D.;
- Bell, Callum J.;
- Kim, Ryan W.;
- May, Gregory D.;
- Woodward, Jimmy E.;
- Caillier, Stacy J.;
- McElroy, Joseph P.;
- Gomez, Refujia;
- Pando, Marcelo J.;
- Clendenen, Leonda E.;
- Ganusova, Elena E.;
- Schilkey, Faye D.;
- Ramaraj, Thiruvarangan
Publication type:
Article
Association Between Serum Neurofilament Light Chain Levels and Long-term Disease Course Among Patients With Multiple Sclerosis Followed up for 12 Years.
Published in:
JAMA Neurology, 2019, v. 76, n. 11, p. 1359, doi. 10.1001/jamaneurol.2019.2137
By:
- Cantó, Ester;
- Barro, Christian;
- Zhao, Chao;
- Caillier, Stacy J.;
- Michalak, Zuzanna;
- Bove, Riley;
- Tomic, Davorka;
- Santaniello, Adam;
- Häring, Dieter A.;
- Hollenbach, Jill;
- Henry, Roland G.;
- Cree, Bruce A. C.;
- Kappos, Ludwig;
- Leppert, David;
- Hauser, Stephen L.;
- Benkert, Pascal;
- Oksenberg, Jorge R.;
- Kuhle, Jens
Publication type:
Article
Association of HLA Genetic Risk Burden With Disease Phenotypes in Multiple Sclerosis.
Published in:
JAMA Neurology, 2016, v. 73, n. 7, p. 795, doi. 10.1001/jamaneurol.2016.0980
By:
- Isobe, Noriko;
- Keshavan, Anisha;
- Gourraud, Pierre-Antoine;
- Zhu, Alyssa H.;
- Datta, Esha;
- Schlaeger, Regina;
- Caillier, Stacy J.;
- Santaniello, Adam;
- Lizée, Antoine;
- Himmelstein, Daniel S.;
- Baranzini, Sergio E.;
- Hollenbach, Jill;
- Cree, Bruce A. C.;
- Hauser, Stephen L.;
- Oksenberg, Jorge R.;
- Henry, Roland G.
Publication type:
Article
Copy number variation in African Americans.
Published in:
BMC Genetics, 2009, v. 10, p. 1, doi. 10.1186/1471-2156-10-15
By:
- McElroy, Joseph P.;
- Nelson, Matthew R.;
- Caillier, Stacy J.;
- Oksenberg, Jorge R.
Publication type:
Article
Correction: Synergy or Independence? Deciphering the Interaction of HLA Class I and NK Cell KIR Alleles in Early HIV-1 Disease Progression.
Published in:
2007
By:
- Barbour, Jason D;
- Sriram, Uma;
- Caillier, Stacy J;
- Levy, Jay A;
- Hecht, Frederick M;
- Oksenberg, Jorge R
Publication type:
Correction Notice
Synergy or Independence? Deciphering the Interaction of HLA Class I and NK Cell KIR Alleles in Early HIV-1 Disease Progression.
Published in:
2007
By:
- Barbour, Jason D.;
- Sriram, Uma;
- Caillier, Stacy J.;
- Levy, Jay A.;
- Hecht, Frederick M.;
- Oksenberg, Jorge R.
Publication type:
Editorial
Next-Generation Sequencing Identifies Extended HLA Class I and II Haplotypes Associated With Early-Onset and Late-Onset Myasthenia Gravis in Italian, Norwegian, and Swedish Populations.
Published in:
Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.667336
By:
- Creary, Lisa E.;
- Gangavarapu, Sridevi;
- Caillier, Stacy J.;
- Cavalcante, Paola;
- Frangiamore, Rita;
- Lie, Benedicte A.;
- Bengtsson, Mats;
- Harbo, Hanne Flinstad;
- Brauner, Susanna;
- Hollenbach, Jill A.;
- Oksenberg, Jorge R.;
- Bernasconi, Pia;
- Maniaol, Angelina Hatlø;
- Hammarström, Lennart;
- Mantegazza, Renato;
- Fernández-Viña, Marcelo A.
Publication type:
Article
High Resolution Haplotype Analyses of Classical HLA Genes in Families With Multiple Sclerosis Highlights the Role of HLA-DP Alleles in Disease Susceptibility.
Published in:
Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.644838
By:
- Osoegawa, Kazutoyo;
- Creary, Lisa E.;
- Montero-Martín, Gonzalo;
- Mallempati, Kalyan C.;
- Gangavarapu, Sridevi;
- Caillier, Stacy J.;
- Santaniello, Adam;
- Isobe, Noriko;
- Hollenbach, Jill A.;
- Hauser, Stephen L.;
- Oksenberg, Jorge R.;
- Fernández-Viňa, Marcelo A.
Publication type:
Article
Aggregation of multiple sclerosis genetic risk variants in multiple and single case families.
Published in:
Annals of Neurology, 2011, v. 69, n. 1, p. 65, doi. 10.1002/ana.22323
By:
- Gourraud, Pierre-Antoine;
- McElroy, Joseph P.;
- Caillier, Stacy J.;
- Johnson, Britt A.;
- Santaniello, Adam;
- Hauser, Stephen L.;
- Oksenberg, Jorge R.
Publication type:
Article
A second major histocompatibility complex susceptibility locus for multiple sclerosis.
Published in:
Annals of Neurology, 2007, v. 61, n. 3, p. 228
By:
- Tai Wai Yeo;
- Philip L. De Jager;
- Simon G. Gregory;
- Lisa F. Barcellos;
- Amie Walton;
- An Goris;
- Chiara Fenoglio;
- Maria Ban;
- Craig J. Taylor;
- Reyna S. Goodman;
- Emily Walsh;
- Cara S. Wolfish;
- Roger Horton;
- James Traherne;
- Stephan Beck;
- John Trowsdale;
- Stacy J. Caillier;
- Adrian J. Ivinson;
- Todd Green;
- Susan Pobywajlo
Publication type:
Article
Linkage and association with the NOS2A locus on chromosome 17q11 in multiple sclerosis.
Published in:
Annals of Neurology, 2004, v. 55, n. 6, p. 793
By:
- Lisa F. Barcellos;
- Ann B. Begovich;
- Rebecca L. Reynolds;
- Stacy J. Caillier;
- David Brassat;
- Silke Schmidt;
- Sarah E. Grams;
- Karen Walker;
- Lori L. Steiner;
- Bruce A. C. Cree;
- Althea Stillman;
- Robin R. Lincoln;
- Margaret A. Pericak-Vance;
- Jonathan L. Haines;
- Henry A. Erlich;
- Stephen L. Hauser;
- Jorge R. Oksenberg
Publication type:
Article
A non-synonymous single-nucleotide polymorphism associated with multiple sclerosis risk affects the EVI5 interactome.
Published in:
Human Molecular Genetics, 2015, v. 24, n. 24, p. 7151, doi. 10.1093/hmg/ddv412
By:
- Didonna, Alessandro;
- Isobe, Noriko;
- Caillier, Stacy J.;
- Li, Kathy H.;
- Burlingame, Alma L.;
- Hauser, Stephen L.;
- Baranzini, Sergio E.;
- Patsopoulos, Nikolaos A.;
- Oksenberg, Jorge R.
Publication type:
Article
Blood RNA profiling in a large cohort of multiple sclerosis patients and healthy controls.
Published in:
Human Molecular Genetics, 2013, v. 22, n. 20, p. 4194, doi. 10.1093/hmg/ddt267
By:
- Nickles, Dorothee;
- Chen, Hsuan P.;
- Li, Michael M.;
- Khankhanian, Pouya;
- Madireddy, Lohith;
- Caillier, Stacy J.;
- Santaniello, Adam;
- Cree, Bruce A.C.;
- Pelletier, Daniel;
- Hauser, Stephen L.;
- Oksenberg, Jorge R.;
- Baranzini, Sergio E.
Publication type:
Article
Transcription-Based Prediction of Response to IFNβ Using Supervised Computational Methods.
Published in:
PLoS Biology, 2005, v. 3, n. 1, p. 166, doi. 10.1371/journal.pbio.0030002
By:
- Baranzini, Sergio E.;
- Mousavi, Parvin;
- Rio, Jordi;
- Caillier, Stacy J.;
- Stiliman, Althea;
- Villoslada, Pablo;
- Wyatt, Matthew M.;
- Comabella, Manuel;
- Greller, Larry D.;
- Somogyi, Roland;
- Montalban, Xavier;
- Oksenberg, Jorge R.
Publication type:
Article
Transcription-Based Prediction of Response to IFNβ Using Supervised Computational Methods.
Published in:
PLoS Biology, 2004, v. 2, n. 12, p. 1, doi. 10.1371/journal.pbio.0030002
By:
- Baranzini, Sergio E;
- Mousavi, Parvin;
- Rio, Jordi;
- Caillier, Stacy J;
- Stillman, Althea;
- Villoslada, Pablo;
- Wyatt, Matthew M;
- Comabella, Manuel;
- Greller, Larry D;
- Somogyi, Roland;
- Montalban, Xavier;
- Oksenberg, Jorge R
Publication type:
Article
A splice acceptor variant in HLA‐DRA affects the conformation and cellular localization of the class II DR alpha‐chain.
Published in:
Immunology, 2021, v. 162, n. 2, p. 194, doi. 10.1111/imm.13273
By:
- Didonna, Alessandro;
- Damotte, Vincent;
- Shams, Hengameh;
- Matsunaga, Atsuko;
- Caillier, Stacy J.;
- Dandekar, Ravi;
- Misra, Maneesh K.;
- Mofrad, Mohammad R. K.;
- Oksenberg, Jorge R.;
- Hollenbach, Jill A.
Publication type:
Article
Refining the association of MHC with multiple sclerosis in African Americans.
Published in:
Human Molecular Genetics, 2010, v. 19, n. 15, p. 3080, doi. 10.1093/hmg/ddq197
By:
- McElroy, Joseph P.;
- Cree, Bruce A. C.;
- Caillier, Stacy J.;
- Gregersen, Peter K.;
- Herbert, Joseph;
- Khan, Omar A.;
- Freudenberg, Jan;
- Lee, Annette;
- Bridges, S. Louis;
- Hauser, Stephen L.;
- Oksenberg, Jorge R.;
- Gourraud, Pierre-Antoine
Publication type:
Article
Inflammatory and neurodegenerative serum protein biomarkers increase sensitivity to detect clinical and radiographic disease activity in multiple sclerosis.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48602-9
By:
- Chitnis, Tanuja;
- Qureshi, Ferhan;
- Gehman, Victor M.;
- Becich, Michael;
- Bove, Riley;
- Cree, Bruce A. C.;
- Gomez, Refujia;
- Hauser, Stephen L.;
- Henry, Roland G.;
- Katrib, Amal;
- Lokhande, Hrishikesh;
- Paul, Anu;
- Caillier, Stacy J.;
- Santaniello, Adam;
- Sattarnezhad, Neda;
- Saxena, Shrishti;
- Weiner, Howard;
- Hajime Yano;
- Baranzini, Sergio E.
Publication type:
Article
Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset.
Published in:
BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-626
By:
- Khankhanian, Pouya;
- Gourraud, Pierre-Antoine;
- Caillier, Stacy J;
- Santaniello, Adam;
- Hauser, Stephen L;
- Baranzini, Sergio E;
- Oksenberg, Jorge R
Publication type:
Article
Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset.
Published in:
BMC Genomics, 2010, v. 11, p. 626, doi. 10.1186/1471-2164-11-626
By:
- Khankhanian, Pouya;
- Gourraud, Pierre-Antoine;
- Caillier, Stacy J.;
- Santaniello, Adam;
- Hauser, Stephen L.;
- Baranzini, Sergio E.;
- Oksenberg, Jorge R.
Publication type:
Article

Found: 28

Cell type-specific transcriptomics identifies neddylation as a novel therapeutic target in multiple sclerosis.

An ImmunoChip study of multiple sclerosis risk in African Americans.

Interleukin 7 receptor α chain (IL7R) shows allelic and functional association with multiple sclerosis.

Household paired design reduces variance and increases power in multi-city gut microbiome study in multiple sclerosis.

Deconstruction of HLA-DRB104:01:01 and HLA-DRB115:01:01 class II haplotypes using next-generation sequencing in European-Americans with multiple sclerosis.

Prognostic biomarkers of IFNb therapy in multiple sclerosis patients.

Oligoclonal bands and age at onset correlate with genetic risk score in multiple sclerosis.

SNP imputation bias reduces effect size determination.

Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis.

Association Between Serum Neurofilament Light Chain Levels and Long-term Disease Course Among Patients With Multiple Sclerosis Followed up for 12 Years.

Association of HLA Genetic Risk Burden With Disease Phenotypes in Multiple Sclerosis.

Copy number variation in African Americans.

Correction: Synergy or Independence? Deciphering the Interaction of HLA Class I and NK Cell KIR Alleles in Early HIV-1 Disease Progression.

Synergy or Independence? Deciphering the Interaction of HLA Class I and NK Cell KIR Alleles in Early HIV-1 Disease Progression.

Next-Generation Sequencing Identifies Extended HLA Class I and II Haplotypes Associated With Early-Onset and Late-Onset Myasthenia Gravis in Italian, Norwegian, and Swedish Populations.

High Resolution Haplotype Analyses of Classical HLA Genes in Families With Multiple Sclerosis Highlights the Role of HLA-DP Alleles in Disease Susceptibility.

Aggregation of multiple sclerosis genetic risk variants in multiple and single case families.

A second major histocompatibility complex susceptibility locus for multiple sclerosis.

Linkage and association with the NOS2A locus on chromosome 17q11 in multiple sclerosis.

A non-synonymous single-nucleotide polymorphism associated with multiple sclerosis risk affects the EVI5 interactome.

Blood RNA profiling in a large cohort of multiple sclerosis patients and healthy controls.

Transcription-Based Prediction of Response to IFNβ Using Supervised Computational Methods.

Transcription-Based Prediction of Response to IFNβ Using Supervised Computational Methods.

A splice acceptor variant in HLA‐DRA affects the conformation and cellular localization of the class II DR alpha‐chain.

Refining the association of MHC with multiple sclerosis in African Americans.

Inflammatory and neurodegenerative serum protein biomarkers increase sensitivity to detect clinical and radiographic disease activity in multiple sclerosis.

Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset.

Genetic variation in the odorant receptors family 13 and the mhc loci influence mate selection in a multiple sclerosis dataset.