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Mitochondrial-nuclear epistasis underlying phenotypic variation in breast cancer pathology.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-05148-4
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- Publication type:
- Article
Elucidation of Mechanisms of Topotecan-Induced Cell Death in Human Breast MCF-7 Cancer Cells by Gene Expression Analysis.
- Published in:
- Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00775
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- Publication type:
- Article
goSTAG: gene ontology subtrees to tag and annotate genes within a set.
- Published in:
- Source Code for Biology & Medicine, 2017, v. 12, p. 1, doi. 10.1186/s13029-017-0066-1
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- Publication type:
- Article
Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-119
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- Publication type:
- Article
Development of gut microbiota in infants not exposed to medical interventions.
- Published in:
- APMIS, 2011, v. 119, n. 1, p. 17, doi. 10.1111/j.1600-0463.2010.02688.x
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- Publication type:
- Article
Persistent gene expression and DNA methylation alterations linked to carcinogenic effects of dichloroacetic acid.
- Published in:
- Frontiers in Oncology, 2024, p. 1, doi. 10.3389/fonc.2024.1389634
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- Publication type:
- Article
Revealing a human p53 universe.
- Published in:
- Nucleic Acids Research, 2018, v. 46, n. 16, p. 8153, doi. 10.1093/nar/gky720
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- Publication type:
- Article
Tunable regulation of CREB DNA binding activity couples genotoxic stress response and metabolism.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 20, p. 9667, doi. 10.1093/nar/gkw643
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- Publication type:
- Article
Principal component analysis-based filtering improves detection for Affymetrix gene expression arrays.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 13, p. e86, doi. 10.1093/nar/gkr241
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- Publication type:
- Article
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.
- Published in:
- Nature Biotechnology, 2014, v. 32, n. 9, p. 926, doi. 10.1038/nbt.3001
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- Publication type:
- Article
Addendum: Standardizing global gene expression analysis between laboratories and across platforms.
- Published in:
- 2005
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- Publication type:
- Correction Notice
Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02315-0
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- Publication type:
- Article
A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02316-z
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- Publication type:
- Article
Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02315-0
- By:
- Publication type:
- Article
Gene Expression in Uterine Leiomyoma from Tumors Likely to Be Growing (from Black Women over 35) and Tumors Likely to Be Non-Growing (from White Women over 35).
- Published in:
- PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0063909
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- Publication type:
- Article
Population Differences in Transcript-Regulator Expression Quantitative Trait Loci.
- Published in:
- PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0034286
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- Publication type:
- Article
The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2956-z
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- Publication type:
- Article
EPIG-Seq: extracting patterns and identifying co-expressed genes from RNA-Seq data.
- Published in:
- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2584-7
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- Publication type:
- Article
Toxicogenomics profiling of bone marrow from rats treated with topotecan in combination with oxaliplatin: a mechanistic strategy to inform combination toxicity.
- Published in:
- Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2015.00014
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- Publication type:
- Article
DNA methylation in mice is influenced by genetics as well as sex and life experience.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-018-08067-z
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- Publication type:
- Article
Gene Expression Profiling Elucidates Cellular Responses to NCX4040 in Human Ovarian Tumor Cells: Implications in the Mechanisms of Action of NCX4040.
- Published in:
- Cancers, 2023, v. 15, n. 1, p. 285, doi. 10.3390/cancers15010285
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- Publication type:
- Article
Novel Roles for Notch3 and Notch4 Receptors in Gene Expression and Susceptibility to Ozone-Induced Lung Inflammation in Mice.
- Published in:
- Environmental Health Perspectives, 2015, v. 123, n. 8, p. 799, doi. 10.1289/ehp.1408852
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- Publication type:
- Article
Novel Roles for Notch3 and Notch4 Receptors in Gene Expression and Susceptibility to Ozone-Induced Lung Inflammation in Mice.
- Published in:
- Environmental Health Perspectives, 2015, v. 123, n. 8, p. 799, doi. 10.1289/ehp.1408852
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- Publication type:
- Article
Research. Development of Phenotypic and Transcriptional Biomarkers to Evaluate Relative Activity of Potentially Estrogenic Chemicals in Ovariectomized Mice.
- Published in:
- Environmental Health Perspectives, 2015, v. 123, n. 4, p. 344, doi. 10.1289/ehp.1307935
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- Publication type:
- Article
Profiles of Global Gene Expression in Ionizing-Radiation -- Damaged Human Diploid Fibroblasts Reveal Synchronization behind the G<sub>1</sub> Checkpoint in a G<sub>0</sub>-like State of Quiescence.
- Published in:
- Environmental Health Perspectives, 2006, v. 114, n. 4, p. 553, doi. 10.1289/ehp.8026
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- Publication type:
- Article
Database Development in Toxicogenomics: Issues and Efforts.
- Published in:
- Environmental Health Perspectives, 2004, v. 112, n. 4, p. 495, doi. 10.1289/ehp.6697
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- Publication type:
- Article
Progress in the Application of DNA Microarrays.
- Published in:
- Environmental Health Perspectives, 2001, v. 109, n. 9, p. 881, doi. 10.1289/ehp.01109881
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- Publication type:
- Article
Discernment of possible mechanisms of hepatotoxicity viabiological processes over-represented by co-expressed genes.
- Published in:
- BMC Genomics, 2009, v. 10, p. 272, doi. 10.1186/1471-2164-10-272
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- Publication type:
- Article
Genes related to apoptosis predict necrosis of the liver as a phenotype observed in rats exposed to a compendium of hepatotoxicants.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-288
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- Publication type:
- Article
Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories.
- Published in:
- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-285
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- Publication type:
- Article
Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 427, doi. 10.1186/1471-2105-8-427
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- Publication type:
- Article
Comparison of Normalization Methods for Analysis of TempO-Seq Targeted RNA Sequencing Data.
- Published in:
- Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00594
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- Publication type:
- Article
Base-Resolution Analysis of DNA Methylation Patterns Downstream of Dnmt3a in Mouse Naïve B Cells.
- Published in:
- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 3, p. 805, doi. 10.1534/g3.117.300446
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- Publication type:
- Article
A Strategy to Compare Single-Cell RNA Sequencing Data Sets Provides Phenotypic Insight into Cellular Heterogeneity Underlying Biological Similarities and Differences Between Samples.
- Published in:
- Bioinformatics & Biology Insights, 2024, p. 1, doi. 10.1177/11779322241280866
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- Publication type:
- Article
Identification of distinct and common gene expression changes after oxidative stress and gamma and ultraviolet radiation (This article is a US Government work and, as such, is in the public domain in the United States of America.).
- Published in:
- Molecular Carcinogenesis, 2003, v. 37, n. 2, p. 65, doi. 10.1002/mc.10122
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- Publication type:
- Article
Toward a Checklist for Exchange and Interpretation of Data from a Toxicology Study.
- Published in:
- Toxicological Sciences, 2007, v. 99, n. 1, p. 26, doi. 10.1093/toxsci/kfm090
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- Publication type:
- Article
Chemical Effects in Biological Systems—Data Dictionary (CEBS-DD): A Compendium of Terms for the Capture and Integration of Biological Study Design Description, Conventional Phenotypes, and ‘Omics Data.
- Published in:
- Toxicological Sciences, 2005, v. 88, n. 2, p. 585, doi. 10.1093/toxsci/kfi315
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- Publication type:
- Article
Differential Toxicogenomic Responses to 2,3,7,8-Tetrachlorodibenzo-p-dioxin in Malignant and Nonmalignant Human Airway Epithelial Cells.
- Published in:
- Toxicological Sciences, 2002, v. 69, n. 2, p. 409, doi. 10.1093/toxsci/69.2.409
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- Publication type:
- Article
Gene Expression Analysis Reveals Chemical-Specific Profiles.
- Published in:
- Toxicological Sciences, 2002, v. 67, n. 2, p. 219, doi. 10.1093/toxsci/67.2.219
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- Publication type:
- Article
Prediction of Compound Signature Using High Density Gene Expression Profiling.
- Published in:
- Toxicological Sciences, 2002, v. 67, n. 2, p. 232, doi. 10.1093/toxsci/67.2.232
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- Publication type:
- Article
Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences.
- Published in:
- 2018
- By:
- Publication type:
- Editorial
A Comparison of the TempO-Seq S1500+ Platform to RNA-Seq and Microarray Using Rat Liver Mode of Action Samples.
- Published in:
- Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00485
- By:
- Publication type:
- Article
Crosstalk between Receptor and Non-receptor Mediated Chemical Modes of Action in Rat Livers Converges through a Dysregulated Gene Expression Network at Tumor Suppressor Tp53.
- Published in:
- Frontiers in Genetics, 2017, p. 1, doi. 10.3389/fgene.2017.00157
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- Publication type:
- Article
PAGE: phase-shifted analysis of gene expression.
- Published in:
- Bioinformatics, 2006, v. 22, n. 3, p. 367, doi. 10.1093/bioinformatics/bti778
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- Publication type:
- Article
MAPS: a microarray project system for gene expression experiment information and data validation.
- Published in:
- Bioinformatics, 2001, v. 17, n. 6, p. 564, doi. 10.1093/bioinformatics/17.6.564
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- Publication type:
- Article
Structural Equation Modeling of In silico Perturbations.
- Published in:
- Frontiers in Genetics, 2021, v. 12, p. 1, doi. 10.3389/fgene.2021.727532
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- Publication type:
- Article
Proceedings of the First International Conference on Toxicogenomics Integrated with Environmental Sciences (TIES-2007).
- Published in:
- 2009
- By:
- Publication type:
- Proceeding
RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5220-x
- By:
- Publication type:
- Article
Global Transcriptome and Deletome Profiles of Yeast Exposed to Transition Metals.
- Published in:
- PLoS Genetics, 2008, v. 4, n. 4, p. 1, doi. 10.1371/journal.pgen.1000053
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- Publication type:
- Article
Differential Transcriptomic Analysis of Spontaneous Lung Tumors in B6C3F1 Mice: Comparison to Human Non–Small Cell Lung Cancer.
- Published in:
- Toxicologic Pathology, 2012, v. 40, n. 8, p. 1141, doi. 10.1177/0192623312447543
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- Publication type:
- Article