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DICOM re‐encoding of volumetrically annotated Lung Imaging Database Consortium (LIDC) nodules.
Published in:
Medical Physics, 2020, v. 47, n. 12, p. 1, doi. 10.1002/mp.14806
By:
- Fedorov, Andrey;
- Hancock, Matthew;
- Clunie, David;
- Brochhausen, Mathias;
- Bona, Jonathan;
- Kirby, Justin;
- Freymann, John;
- Pieper, Steve;
- Aerts, Hugo J. W. L.;
- Kikinis, Ron;
- Prior, Fred
Publication type:
Article
DICOM re‐encoding of volumetrically annotated Lung Imaging Database Consortium (LIDC) nodules.
Published in:
Medical Physics, 2020, v. 47, n. 11, p. 5953, doi. 10.1002/mp.14445
By:
- Fedorov, Andrey;
- Hancock, Matthew;
- Clunie, David;
- Brochhausen, Mathias;
- Bona, Jonathan;
- Kirby, Justin;
- Freymann, John;
- Pieper, Steve;
- J. W. L. Aerts, Hugo;
- Kikinis, Ron;
- Prior, Fred
Publication type:
Article
Designing and Managing Advanced, Intelligent and Ethical Health and Social Care Ecosystems.
Published in:
Journal of Personalized Medicine, 2023, v. 13, n. 8, p. 1209, doi. 10.3390/jpm13081209
By:
- Blobel, Bernd;
- Ruotsalainen, Pekka;
- Brochhausen, Mathias;
- Prestes, Edson;
- Houghtaling, Michael A.
Publication type:
Article
Assessing the Need for Semantic Data Integration for Surgical Biobanks—A Knowledge Representation Perspective.
Published in:
Journal of Personalized Medicine, 2022, v. 12, n. 5, p. 757, doi. 10.3390/jpm12050757
By:
- Brochhausen, Mathias;
- Whorton, Justin M.;
- Zayas, Cilia E.;
- Kimbrell, Monica P.;
- Bost, Sarah J.;
- Singh, Nitya;
- Brochhausen, Christoph;
- Sexton, Kevin W.;
- Blobel, Bernd
Publication type:
Article
Development and validation of the early warning system scores ontology.
Published in:
Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00296-6
By:
- Zayas, Cilia E.;
- Whorton, Justin M.;
- Sexton, Kevin W.;
- Mabry, Charles D.;
- Dowland, S. Clint;
- Brochhausen, Mathias
Publication type:
Article
A Checklist for Reproducible Computational Analysis in Clinical Metabolomics Research.
Published in:
Metabolites (2218-1989), 2022, v. 12, n. 1, p. 87, doi. 10.3390/metabo12010087
By:
- Du, Xinsong;
- Aristizabal-Henao, Juan J.;
- Garrett, Timothy J.;
- Brochhausen, Mathias;
- Hogan, William R.;
- Lemas, Dominick J.
Publication type:
Article
A Minimal Information Model for Potential Drug-Drug Interactions.
Published in:
Frontiers in Pharmacology, 2021, v. 11, p. N.PAG, doi. 10.3389/fphar.2020.608068
By:
- Hochheiser, Harry;
- Jing, Xia;
- Garcia, Elizabeth A.;
- Ayvaz, Serkan;
- Sahay, Ratnesh;
- Dumontier, Michel;
- Banda, Juan M.;
- Beyan, Oya;
- Brochhausen, Mathias;
- Draper, Evan;
- Habiel, Sam;
- Hassanzadeh, Oktie;
- Herrero-Zazo, Maria;
- Hocum, Brian;
- Horn, John;
- LeBaron, Brian;
- Malone, Daniel C.;
- Nytrø, Øystein;
- Reese, Thomas;
- Romagnoli, Katrina
Publication type:
Article
Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse.
Published in:
Journal of Biomedical Semantics, 2018, v. 9, n. 1, p. N.PAG, doi. 10.1186/s13326-018-0183-z
By:
- Judkins, John;
- Tay-Sontheimer, Jessica;
- Boyce, Richard D.;
- Brochhausen, Mathias
Publication type:
Article
The Apollo Structured Vocabulary: an OWL2 ontology of phenomena in infectious disease epidemiology and population biology for use in epidemic simulation.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0092-y
By:
- Hogan, William R.;
- Wagner, Michael M.;
- Brochhausen, Mathias;
- Levander, John;
- Brown, Shawn T.;
- Millett, Nicholas;
- DePasse, Jay;
- Hanna, Josh
Publication type:
Article
The ontology of medically related social entities: recent developments.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0087-8
By:
- Hicks, Amanda;
- Hanna, Josh;
- Welch, Daniel;
- Brochhausen, Mathias;
- Hogan, William R.
Publication type:
Article
OBIB-a novel ontology for biobanking.
Published in:
Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0068-y
By:
- Brochhausen, Mathias;
- Jie Zheng;
- Birtwell, David;
- Williams, Heather;
- Masci, Anna Maria;
- Ellis, Helena Judge;
- Stoeckert Jr., Christian J.
Publication type:
Article
Developing a semantically rich ontology for the biobank-administration domain.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-23
By:
- Brochhausen, Mathias;
- Fransson, Martin N.;
- Kanaskar, Nitin V.;
- Eriksson, Mikael;
- Merino-Martinez, Roxana;
- Hall, Roger A.;
- Norlin, Loreana;
- Kjellqvist, Sanela;
- Hortlund, Maria;
- Topaloglu, Umit;
- Hogan, William R.;
- Litton, Jan-Eric
Publication type:
Article
Building a drug ontology based on RxNorm and other sources.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-44
By:
- Hanna, Josh;
- Joseph, Eric;
- Brochhausen, Mathias;
- Hogan, William R.
Publication type:
Article
CollaborationViz: Interactive Visual Exploration of Biomedical Research Collaboration Networks.
Published in:
PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0111928
By:
- Bian, Jiang;
- Xie, Mengjun;
- Hudson, Teresa J.;
- Eswaran, Hari;
- Brochhausen, Mathias;
- Hanna, Josh;
- Hogan, William R.
Publication type:
Article
235 Use of Community Review Boards to Evaluate the Utility of the ICF Navigator - A Browser-based Tool to Create Plain-Language Informed Consent Forms.
Published in:
2023
By:
- Spencer, Nicola;
- Bona, Jonathan;
- Brochhausen, Mathias;
- Caballero, Alison;
- Gan, Jennifer M.;
- Kemp, Aaron S.;
- Miner, Skye;
- Utecht, Joseph;
- Whorton, Justin;
- James, Laura
Publication type:
Abstract
The informed consent form navigator: a tool for producing readable and compliant consent documents.
Published in:
Journal of Clinical & Translational Science, 2023, v. 7, n. 1, p. 1, doi. 10.1017/cts.2022.507
By:
- Bona, Jonathan P.;
- Utecht, Joseph;
- Kemp, Aaron S.;
- Gan, Jennifer M.;
- Caballero, Alison;
- Trudeau, Christopher R.;
- Brochhausen, Mathias;
- James, Laura
Publication type:
Article
Experiences with developing and implementing a courageous conversations pilot classroom through synchronous meetings via zoom.
Published in:
Journal of Clinical & Translational Science, 2023, v. 7, n. 1, p. 1, doi. 10.1017/cts.2022.488
By:
- Zayas, Cilia E.;
- Williams, Tremaine B.;
- Brochhausen, Mathias
Publication type:
Article
Standardization of assay representation in the Ontology for Biomedical Investigations.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab040
By:
- Vita, Randi;
- Zheng, Jie;
- Jackson, Rebecca;
- Dooley, Damion;
- Overton, James A;
- Miller, Mark A;
- Berrios, Daniel C;
- Scheuermann, Richard H;
- He, Yongqun;
- McGinty, Hande Küçük;
- Brochhausen, Mathias;
- Lin, Aisyah Yu;
- Jain, Sagar B;
- Chibucos, Marcus C;
- Judkins, John;
- Giglio, Michelle G;
- Feng, Irene Y;
- Burns, Gully;
- Brush, Matthew H;
- Peters, Bjoern
Publication type:
Article
Toward a common language for biobanking.
Published in:
European Journal of Human Genetics, 2015, v. 23, n. 1, p. 22, doi. 10.1038/ejhg.2014.45
By:
- Fransson, Martin N;
- Rial-Sebbag, Emmanuelle;
- Brochhausen, Mathias;
- Litton, Jan-Eric
Publication type:
Article
Evaluating LC-HRMS metabolomics data processing software using FAIR principles for research software.
Published in:
Metabolomics, 2023, v. 19, n. 2, p. 1, doi. 10.1007/s11306-023-01974-3
By:
- Du, Xinsong;
- Dastmalchi, Farhad;
- Ye, Hao;
- Garrett, Timothy J.;
- Diller, Matthew A.;
- Liu, Mei;
- Hogan, William R.;
- Brochhausen, Mathias;
- Lemas, Dominick J.
Publication type:
Article
Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3192-8
By:
- Bona, Jonathan P.;
- Brochhausen, Mathias;
- Hogan, William R.
Publication type:
Article
The Ontology for Biomedical Investigations.
Published in:
PLoS ONE, 2016, v. 11, n. 4, p. 1, doi. 10.1371/journal.pone.0154556
By:
- Bandrowski, Anita;
- Brinkman, Ryan;
- Brochhausen, Mathias;
- Brush, Matthew H.;
- Bug, Bill;
- Chibucos, Marcus C.;
- Clancy, Kevin;
- Courtot, Mélanie;
- Derom, Dirk;
- Dumontier, Michel;
- Fan, Liju;
- Fostel, Jennifer;
- Fragoso, Gilberto;
- Gibson, Frank;
- Gonzalez-Beltran, Alejandra;
- Haendel, Melissa A.;
- He, Yongqun;
- Heiskanen, Mervi;
- Hernandez-Boussard, Tina;
- Jensen, Mark
Publication type:
Article

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