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Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level.
Published in:
2021
By:
- Salimi, Vahid;
- Viegas, Mariana;
- Trento, Alfonsina;
- Agoti, Charles N.;
- Anderson, Larry J.;
- Avadhanula, Vasanthi;
- Bahl, Justin;
- Bont, Louis;
- Brister, J. Rodney;
- Cane, Patricia A.;
- Galiano, Mónica;
- Graham, Barney S.;
- Hatcher, Eneida L.;
- Hellferscee, Orienka;
- Henke, David M.;
- Hirve, Siddhivinayak;
- Jackson, Sandra;
- Keyaerts, Els;
- Kragten-Tabatabaie, Leyla;
- Lindstrom, Stephen
Publication type:
journal article
Database resources of the National Center for Biotechnology Information.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D23, doi. 10.1093/nar/gky1069
By:
- Sayers, Eric W;
- Agarwala, Richa;
- Bolton, Evan E;
- Brister, J Rodney;
- Canese, Kathi;
- Clark, Karen;
- Connor, Ryan;
- Fiorini, Nicolas;
- Funk, Kathryn;
- Hefferon, Timothy;
- Holmes, J Bradley;
- Kim, Sunghwan;
- Kimchi, Avi;
- Kitts, Paul A;
- Lathrop, Stacy;
- Lu, Zhiyong;
- Madden, Thomas L;
- Marchler-Bauer, Aron;
- Phan, Lon;
- Schneider, Valerie A
Publication type:
Article
Virus Variation Resource - improved response to emergent viral outbreaks.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D482, doi. 10.1093/nar/gkw1065
By:
- Hatcher, Eneida L.;
- Zhdanov, Sergey A.;
- Yiming Bao;
- Blinkova, Olga;
- Nawrocki, Eric P.;
- Ostapchuck, Yuri;
- Schäffer, Alejandro A.;
- Brister, J. Rodney
Publication type:
Article
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 1, p. D733, doi. 10.1093/nar/gkv1189
By:
- O'Leary, Nuala A.;
- Wright, Mathew W.;
- Rodney Brister, J.;
- Ciufo, Stacy;
- Haddad, Diana;
- McVeigh, Rich;
- Rajput, Bhanu;
- Robbertse, Barbara;
- Smith-White, Brian;
- Ako-Adjei, Danso;
- Astashyn, Alexander;
- Badretdin, Azat;
- Bao, Yiming;
- Blinkova, Olga;
- Brover, Vyacheslav;
- Chetvernin, Vyacheslav;
- Choi, Jinna;
- Cox, Eric;
- Ermolaeva, Olga;
- Farrell, Catherine M.
Publication type:
Article
HIV-1, human interaction database: current status and new features.
Published in:
Nucleic Acids Research, 2015, v. 43, n. D1, p. D566, doi. 10.1093/nar/gku1126
By:
- Ako-Adjei, Danso;
- Fu, William;
- Wallin, Craig;
- Katz, Kenneth S.;
- Song, Guangfeng;
- Darji, Dakshesh;
- Brister, J. Rodney;
- Ptak, Roger G.;
- Pruitt, Kim D.
Publication type:
Article
NCBI Viral Genomes Resource.
Published in:
Nucleic Acids Research, 2015, v. 43, n. D1, p. D571, doi. 10.1093/nar/gku1207
By:
- Brister, J. Rodney;
- Ako-adjei, Danso;
- Bao, Yiming;
- Blinkova, Olga
Publication type:
Article
Virus Variation Resource—recent updates and future directions.
Published in:
Nucleic Acids Research, 2014, v. 42, n. D1, p. D660, doi. 10.1093/nar/gkt1268
By:
- Brister, J. Rodney;
- Bao, Yiming;
- Zhdanov, Sergey A.;
- Ostapchuck, Yuri;
- Chetvernin, Vyacheslav;
- Kiryutin, Boris;
- Zaslavsky, Leonid;
- Kimelman, Michael;
- Tatusova, Tatiana A.
Publication type:
Article
Author Correction: Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification.
Published in:
2023
By:
- Adriaenssens, Evelien M.;
- Roux, Simon;
- Brister, J. Rodney;
- Karsch-Mizrachi, Ilene;
- Kuhn, Jens H.;
- Varsani, Arvind;
- Yigang, Tong;
- Reyes, Alejandro;
- Lood, Cédric;
- Lefkowitz, Elliot J.;
- Sullivan, Matthew B.;
- Edwards, Robert A.;
- Simmonds, Peter;
- Rubino, Luisa;
- Sabanadzovic, Sead;
- Krupovic, Mart;
- Dutilh, Bas E.
Publication type:
Correction Notice
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification.
Published in:
2023
By:
- Adriaenssens, Evelien M.;
- Roux, Simon;
- Brister, J. Rodney;
- Karsch-Mizrachi, Ilene;
- Kuhn, Jens H.;
- Varsani, Arvind;
- Yigang, Tong;
- Reyes, Alejandro;
- Lood, Cédric;
- Lefkowitz, Elliot J.;
- Sullivan, Matthew B.;
- Edwards, Robert A.;
- Simmonds, Peter;
- Rubino, Luisa;
- Sabanadzovic, Sead;
- Krupovic, Mart;
- Dutilh, Bas E.
Publication type:
Letter
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks.
Published in:
Nature Biotechnology, 2019, v. 37, n. 6, p. 632, doi. 10.1038/s41587-019-0100-8
By:
- Bin Jang, Ho;
- Bolduc, Benjamin;
- Zablocki, Olivier;
- Kuhn, Jens H.;
- Roux, Simon;
- Adriaenssens, Evelien M.;
- Brister, J. Rodney;
- Kropinski, Andrew M;
- Krupovic, Mart;
- Lavigne, Rob;
- Turner, Dann;
- Sullivan, Matthew B.
Publication type:
Article
Minimum Information about an Uncultivated Virus Genome (MIUViG).
Published in:
Nature Biotechnology, 2019, v. 37, n. 1, p. 29, doi. 10.1038/nbt.4306
By:
- Roux, Simon;
- Adriaenssens, Evelien M;
- Dutilh, Bas E;
- Koonin, Eugene V;
- Kropinski, Andrew M;
- Krupovic, Mart;
- Kuhn, Jens H;
- Lavigne, Rob;
- Brister, J Rodney;
- Varsani, Arvind;
- Amid, Clara;
- Aziz, Ramy K;
- Bordenstein, Seth R;
- Bork, Peer;
- Breitbart, Mya;
- Cochrane, Guy R;
- Daly, Rebecca A;
- Desnues, Christelle;
- Duhaime, Melissa B;
- Emerson, Joanne B
Publication type:
Article
STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02490-0
By:
- Katz, Kenneth S.;
- Shutov, Oleg;
- Lapoint, Richard;
- Kimelman, Michael;
- Brister, J. Rodney;
- O'Sullivan, Christopher
Publication type:
Article
VADR: validation and annotation of virus sequence submissions to GenBank.
Published in:
BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3537-3
By:
- Schäffer, Alejandro A.;
- Hatcher, Eneida L.;
- Yankie, Linda;
- Shonkwiler, Lara;
- Brister, J. Rodney;
- Karsch-Mizrachi, Ilene;
- Nawrocki, Eric P.
Publication type:
Article
Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee.
Published in:
Archives of Virology, 2023, v. 168, n. 2, p. 1, doi. 10.1007/s00705-022-05694-2
By:
- Turner, Dann;
- Shkoporov, Andrey N.;
- Lood, Cédric;
- Millard, Andrew D.;
- Dutilh, Bas E.;
- Alfenas-Zerbini, Poliane;
- van Zyl, Leonardo J.;
- Aziz, Ramy K.;
- Oksanen, Hanna M.;
- Poranen, Minna M.;
- Kropinski, Andrew M.;
- Barylski, Jakub;
- Brister, J Rodney;
- Chanisvili, Nina;
- Edwards, Rob A.;
- Enault, François;
- Gillis, Annika;
- Knezevic, Petar;
- Krupovic, Mart;
- Kurtböke, Ipek
Publication type:
Article
Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.
Published in:
Viruses (1999-4915), 2024, v. 16, n. 3, p. 430, doi. 10.3390/v16030430
By:
- Connor, Ryan;
- Shakya, Migun;
- Yarmosh, David A.;
- Maier, Wolfgang;
- Martin, Ross;
- Bradford, Rebecca;
- Brister, J. Rodney;
- Chain, Patrick S. G.;
- Copeland, Courtney A.;
- di Iulio, Julia;
- Hu, Bin;
- Ebert, Philip;
- Gunti, Jonathan;
- Jin, Yumi;
- Katz, Kenneth S.;
- Kochergin, Andrey;
- LaRosa, Tré;
- Li, Jiani;
- Li, Po-E;
- Lo, Chien-Chi
Publication type:
Article
The Phylogeny and Pathogenesis of Sacbrood Virus (SBV) Infection in European Honey Bees, Apis mellifera.
Published in:
Viruses (1999-4915), 2019, v. 11, n. 1, p. 61, doi. 10.3390/v11010061
By:
- Li, Jianghong;
- Wang, Tingyun;
- Evans, Jay D.;
- Rose, Robyn;
- Zhao, Yazhou;
- Li, Zhiguo;
- Li, Jilian;
- Huang, Shaokang;
- Heerman, Matthew;
- Rodríguez-García, Cristina;
- Banmeke, Olubukola;
- Brister, J. Rodney;
- Hatcher, Eneida L.;
- Cao, Lianfei;
- Hamilton, Michele;
- Chen, Yanping
Publication type:
Article
How to Name and Classify Your Phage: An Informal Guide.
Published in:
Viruses (1999-4915), 2017, v. 9, n. 4, p. 70, doi. 10.3390/v9040070
By:
- Adriaenssens, Evelien M.;
- Brister, J. Rodney
Publication type:
Article
Nomenclature- and Database-Compatible Names for the Two Ebola Virus Variants that Emerged in Guinea and the Democratic Republic of the Congo in 2014.
Published in:
Viruses (1999-4915), 2014, v. 6, n. 11, p. 4760, doi. 10.3390/v6114760
By:
- Kuhn, Jens H.;
- Andersen, Kristian G.;
- Baize, Sylvain;
- Yīmíng Bào;
- Bavari, Sina;
- Berthet, Nicolas;
- Blinkova, Olga;
- Brister, J. Rodney;
- Anna N.6Clawson;
- Fair, Joseph;
- Gabriel, Martin;
- Garry, Robert F.;
- Gire, Stephen K.;
- Goba, Augustine;
- Gonzalez, Jean-Paul;
- Günther, Stephan;
- Happi, Christian T.;
- Jahrling, Peter B.;
- Kapetshi, Jimmy;
- Kobinger, Gary
Publication type:
Article
Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names.
Published in:
Viruses (1999-4915), 2014, v. 6, n. 9, p. 3663, doi. 10.3390/v6093663
By:
- Kuhn, Jens H.;
- Andersen, Kristian G.;
- Bào, Yīmíng;
- Bavari, Sina;
- Becker, Stephan;
- Bennett, Richard S.;
- Bergman, Nicholas H.;
- Blinkova, Olga;
- Bradfute, Steven;
- Brister, J. Rodney;
- Bukreyev, Alexander;
- Chandran, Kartik;
- Chepurnov, Alexander A.;
- Davey, Robert A.;
- Dietzgen, Ralf G.;
- Doggett, Norman A.;
- Dolnik, Olga;
- Dye, John M.;
- Enterlein, Sven;
- Fenimore, Paul W.
Publication type:
Article
Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages.
Published in:
Systematic Biology, 2020, v. 69, n. 1, p. 110, doi. 10.1093/sysbio/syz036
By:
- Barylski, Jakub;
- Enault, François;
- Dutilh, Bas E;
- Schuller, Margo BP;
- Edwards, Robert A;
- Gillis, Annika;
- Klumpp, Jochen;
- Knezevic, Petar;
- Krupovic, Mart;
- Kuhn, Jens H;
- Lavigne, Rob;
- Oksanen, Hanna M;
- Sullivan, Matthew B;
- Jang, Ho Bin;
- Simmonds, Peter;
- Aiewsakun, Pakorn;
- Wittmann, Johannes;
- Tolstoy, Igor;
- Brister, J Rodney;
- Kropinski, Andrew M
Publication type:
Article
Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.
Published in:
Systematic Biology, 2019, v. 68, n. 5, p. 828, doi. 10.1093/sysbio/syy087
By:
- Calisher, Charles H;
- Briese, Thomas;
- Brister, J Rodney;
- Charrel, Rémi N;
- Dürrwald, Ralf;
- Ebihara, Hideki;
- Fulhorst, Charles F;
- Gāo, George Fú;
- Groschup, Martin H;
- Haddow, Andrew D;
- Hyndman, Timothy H;
- Junglen, Sandra;
- Klempa, Boris;
- Klingström, Jonas;
- Kropinski, Andrew M;
- Krupovic, Mart;
- LaBeaud, A Desiree;
- Maes, Piet;
- Nowotny, Norbert;
- Nunes, Márcio Roberto Teixeira
Publication type:
Article
Database resources of the National Center for Biotechnology Information.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D33, doi. 10.1093/nar/gkad1044
By:
- Sayers, Eric W;
- Beck, Jeff;
- Bolton, Evan E;
- Brister, J Rodney;
- Chan, Jessica;
- Comeau, Donald C;
- Connor, Ryan;
- DiCuccio, Michael;
- Farrell, Catherine M;
- Feldgarden, Michael;
- Fine, Anna M;
- Funk, Kathryn;
- Hatcher, Eneida;
- Hoeppner, Marilu;
- Kane, Megan;
- Kannan, Sivakumar;
- Katz, Kenneth S;
- Kelly, Christopher;
- Klimke, William;
- Kim, Sunghwan
Publication type:
Article
Database resources of the National Center for Biotechnology Information in 2023.
Published in:
Nucleic Acids Research, 2023, v. 51, n. D1, p. D29, doi. 10.1093/nar/gkac1032
By:
- Sayers, Eric W;
- Bolton, Evan E;
- Brister, J Rodney;
- Canese, Kathi;
- Chan, Jessica;
- Comeau, Donald C;
- Farrell, Catherine M;
- Feldgarden, Michael;
- Fine, Anna M;
- Funk, Kathryn;
- Hatcher, Eneida;
- Kannan, Sivakumar;
- Kelly, Christopher;
- Kim, Sunghwan;
- Klimke, William;
- Landrum, Melissa J;
- Lathrop, Stacy;
- Lu, Zhiyong;
- Madden, Thomas L;
- Malheiro, Adriana
Publication type:
Article
Database resources of the national center for biotechnology information.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D20, doi. 10.1093/nar/gkab1112
By:
- Sayers, Eric W;
- Bolton, Evan E;
- Brister, J Rodney;
- Canese, Kathi;
- Chan, Jessica;
- Comeau, Donald C;
- Connor, Ryan;
- Funk, Kathryn;
- Kelly, Chris;
- Kim, Sunghwan;
- Madej, Tom;
- Marchler-Bauer, Aron;
- Lanczycki, Christopher;
- Lathrop, Stacy;
- Lu, Zhiyong;
- Thibaud-Nissen, Francoise;
- Murphy, Terence;
- Phan, Lon;
- Skripchenko, Yuri;
- Tse, Tony
Publication type:
Article
Sequence Read Archive: a decade more of explosive growth.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D387, doi. 10.1093/nar/gkab1053
By:
- Katz, Kenneth;
- Shutov, Oleg;
- Lapoint, Richard;
- Kimelman, Michael;
- Brister, J Rodney;
- O'Sullivan, Christopher
Publication type:
Article
Database resources of the National Center for Biotechnology Information.
Published in:
Nucleic Acids Research, 2020, v. 48, n. D1, p. D9, doi. 10.1093/nar/gkz899
By:
- Sayers, Eric W;
- Beck, Jeff;
- Brister, J Rodney;
- Bolton, Evan E;
- Canese, Kathi;
- Comeau, Donald C;
- Funk, Kathryn;
- Ketter, Anne;
- Kim, Sunghwan;
- Kimchi, Avi;
- Kitts, Paul A;
- Kuznetsov, Anatoliy;
- Lathrop, Stacy;
- Lu, Zhiyong;
- McGarvey, Kelly;
- Madden, Thomas L;
- Murphy, Terence D;
- O'Leary, Nuala;
- Phan, Lon;
- Schneider, Valerie A
Publication type:
Article
Virus nomenclature below the species level: a standardized nomenclature for filovirus strains and variants rescued from cDNA.
Published in:
Archives of Virology, 2014, v. 159, n. 5, p. 1229, doi. 10.1007/s00705-013-1877-2
By:
- Kuhn, Jens;
- Bào, Yīmíng;
- Bavari, Sina;
- Becker, Stephan;
- Bradfute, Steven;
- Brauburger, Kristina;
- Rodney Brister, J.;
- Bukreyev, Alexander;
- Caì, Yíngyún;
- Chandran, Kartik;
- Davey, Robert;
- Dolnik, Olga;
- Dye, John;
- Enterlein, Sven;
- Gonzalez, Jean-Paul;
- Formenty, Pierre;
- Freiberg, Alexander;
- Hensley, Lisa;
- Hoenen, Thomas;
- Honko, Anna
Publication type:
Article
Initiation of bacteriophage T4 DNA replication and replication fork dynamics: a review in the Virology Journal series on bacteriophage T4and its relatives.
Published in:
Virology Journal, 2010, v. 7, p. 358, doi. 10.1186/1743-422X-7-358
By:
- Kreuzer, Kenneth N.;
- Rodney Brister, J.
Publication type:
Article
Adeno-Associated Virus Rep78/Rep68 Promotes Localized Melting of the Rep Binding Element in the Absence of Adenosine Triphosphate.
Published in:
ChemBioChem, 2004, v. 5, n. 3, p. 324, doi. 10.1002/cbic.200300737
By:
- Hua Jane Lou;
- J. Rodney Brister;
- Jianwei Jeffery Li;
- Weijun Chen;
- Nicholas Muzyczka;
- Weihong Tan
Publication type:
Article

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