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The developing hypopharyngeal microbiota in early life.
Published in:
Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0215-9
By:
- Mortensen, Martin Steen;
- Brejnrod, Asker Daniel;
- Roggenbuck, Michael;
- Al-Soud, Waleed Abu;
- Balle, Christina;
- Krogfelt, Karen Angeliki;
- Stokholm, Jakob;
- Thorsen, Jonathan;
- Waage, Johannes;
- Rasmussen, Morten Arendt;
- Bisgaard, Hans;
- Sørensen, Søren Johannes
Publication type:
Article
Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.
Published in:
Microbiome, 2016, v. 4, p. 1, doi. 10.1186/s40168-016-0208-8
By:
- Thorsen, Jonathan;
- Brejnrod, Asker;
- Mortensen, Martin;
- Rasmussen, Morten A.;
- Stokholm, Jakob;
- Al-Soud, Waleed Abu;
- Sørensen, Søren;
- Bisgaard, Hans;
- Waage, Johannes
Publication type:
Article
Soil bacteria show different tolerance ranges to an unprecedented disturbance.
Published in:
Biology & Fertility of Soils, 2018, v. 54, n. 2, p. 189, doi. 10.1007/s00374-017-1255-4
By:
- Nunes, Inês;
- Jurburg, Stephanie;
- Jacquiod, Samuel;
- Brejnrod, Asker;
- Falcão Salles, Joana;
- Priemé, Anders;
- Sørensen, Søren J.
Publication type:
Article
Modeling transfer of vaginal microbiota from mother to infant in early life.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.57051
By:
- Steen Mortensen, Martin;
- Arendt Rasmussen, Morten;
- Stokholm, Jakob;
- Brejnrod, Asker Daniel;
- Balle, Christina;
- Thorsen, Jonathan;
- Krogfelt, Karen Angeliki;
- Bisgaard, Hans;
- Sørensen, Søren Johannes
Publication type:
Article
Asthma and Wheeze Severity and the Oropharyngeal Microbiota in Children and Adolescents.
Published in:
Annals of the American Thoracic Society, 2022, v. 19, n. 12, p. 2031, doi. 10.1513/AnnalsATS.202110-1152OC
By:
- Thorsen, Jonathan;
- Stokholm, Jakob;
- Rasmussen, Morten Arendt;
- Roggenbuck-Wedemeyer, Michael;
- Vissing, Nadja H;
- Mortensen, Martin S;
- Brejnrod, Asker D;
- Fleming, Louise;
- Bush, Andrew;
- Roberts, Graham;
- Singer, Florian;
- Frey, Urs;
- Hedlin, Gunilla;
- Nordlund, Björn;
- Murray, Clare S;
- Abdel-Aziz, Mahmoud I;
- Hashimoto, Simone;
- van Aalderen, Wim;
- Maitland-van der Zee, Anke H;
- Shaw, Dominick
Publication type:
Article
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Published in:
2019
By:
- Bolyen, Evan;
- Rideout, Jai Ram;
- Dillon, Matthew R.;
- Bokulich, Nicholas A.;
- Abnet, Christian C.;
- Al-Ghalith, Gabriel A.;
- Alexander, Harriet;
- Alm, Eric J.;
- Arumugam, Manimozhiyan;
- Asnicar, Francesco;
- Bai, Yang;
- Bisanz, Jordan E.;
- Bittinger, Kyle;
- Brejnrod, Asker;
- Brislawn, Colin J.;
- Brown, C. Titus;
- Callahan, Benjamin J.;
- Caraballo-Rodríguez, Andrés Mauricio;
- Chase, John;
- Cope, Emily K.
Publication type:
Correction Notice
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Published in:
2019
By:
- Bolyen, Evan;
- Rideout, Jai Ram;
- Dillon, Matthew R.;
- Bokulich, Nicholas A.;
- Abnet, Christian C.;
- Al-Ghalith, Gabriel A.;
- Alexander, Harriet;
- Alm, Eric J.;
- Arumugam, Manimozhiyan;
- Asnicar, Francesco;
- Bai, Yang;
- Bisanz, Jordan E.;
- Bittinger, Kyle;
- Brejnrod, Asker;
- Brislawn, Colin J.;
- Brown, C. Titus;
- Callahan, Benjamin J.;
- Caraballo-Rodríguez, Andrés Mauricio;
- Chase, John;
- Cope, Emily K.
Publication type:
Letter
Chlorophyll f-driven photosynthesis in a cavernous cyanobacterium.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 9, p. 2108, doi. 10.1038/ismej.2015.14
By:
- Behrendt, Lars;
- Brejnrod, Asker;
- Schliep, Martin;
- Sørensen, Søren J;
- Larkum, Anthony WD;
- Kühl, Michael
Publication type:
Article
Deciphering conjugative plasmid permissiveness in wastewater microbiomes.
Published in:
Molecular Ecology, 2017, v. 26, n. 13, p. 3556, doi. 10.1111/mec.14138
By:
- Jacquiod, Samuel;
- Brejnrod, Asker;
- Morberg, Stefan M.;
- Abu Al ‐ Soud, Waleed;
- Sørensen, Søren J.;
- Riber, Leise
Publication type:
Article
Differential responses of the gut microbiome and resistome to antibiotic exposures in infants and adults.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-44289-6
By:
- Li, Xuanji;
- Brejnrod, Asker;
- Thorsen, Jonathan;
- Zachariasen, Trine;
- Trivedi, Urvish;
- Russel, Jakob;
- Vestergaard, Gisle Alberg;
- Stokholm, Jakob;
- Rasmussen, Morten Arendt;
- Sørensen, Søren Johannes
Publication type:
Article
Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2023, v. 208, n. 2, p. 142, doi. 10.1164/rccm.202211-2107OC
By:
- Abdel-Aziz, Mahmoud I.;
- Thorsen, Jonathan;
- Hashimoto, Simone;
- Vijverberg, Susanne J. H.;
- Neerincx, Anne H.;
- Brinkman, Paul;
- van Aalderen, Wim;
- Stokholm, Jakob;
- Rasmussen, Morten Arendt;
- Roggenbuck-Wedemeyer, Michael;
- Vissing, Nadja H.;
- Mortensen, Martin Steen;
- Brejnrod, Asker Daniel;
- Fleming, Louise J.;
- Murray, Clare S.;
- Fowler, Stephen J.;
- Frey, Urs;
- Bush, Andrew;
- Singer, Florian;
- Hedlin, Gunilla
Publication type:
Article
The Airway Microbiota Modulates Effect of Azithromycin Treatment for Episodes of Recurrent Asthma-like Symptoms in Preschool Children: A Randomized Clinical Trial.
Published in:
2021
By:
- Thorsen, Jonathan;
- Stokholm, Jakob;
- Rasmussen, Morten Arendt;
- Mortensen, Martin Steen;
- Brejnrod, Asker Daniel;
- Hjelmsø, Mathis;
- Shah, Shiraz;
- Chawes, Bo;
- Bønnelykke, Klaus;
- Sørensen, Søren Johannes;
- Bisgaard, Hans
Publication type:
journal article
Infant airway microbiota and topical immune perturbations in the origins of childhood asthma.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-12989-7
By:
- Thorsen, Jonathan;
- Rasmussen, Morten A.;
- Waage, Johannes;
- Mortensen, Martin;
- Brejnrod, Asker;
- Bønnelykke, Klaus;
- Chawes, Bo L.;
- Brix, Susanne;
- Sørensen, Søren J.;
- Stokholm, Jakob;
- Bisgaard, Hans
Publication type:
Article
Different Degrees of Niche Differentiation for Bacteria, Fungi, and Myxomycetes Within an Elevational Transect in the German Alps.
Published in:
Microbial Ecology, 2019, v. 78, n. 3, p. 764, doi. 10.1007/s00248-019-01347-1
By:
- Borg Dahl, Mathilde;
- Brejnrod, Asker Daniel;
- Russel, Jakob;
- Sørensen, Søren Johannes;
- Schnittler, Martin
Publication type:
Article
The Human Milk Microbiota is Modulated by Maternal Diet.
Published in:
Microorganisms, 2019, v. 7, n. 11, p. 502, doi. 10.3390/microorganisms7110502
By:
- Padilha, Marina;
- Danneskiold-Samsøe, Niels Banhos;
- Brejnrod, Asker;
- Hoffmann, Christian;
- Cabral, Vanessa Pereira;
- Iaucci, Julia de Melo;
- Sales, Cristiane Hermes;
- Fisberg, Regina Mara;
- Cortez, Ramon Vitor;
- Brix, Susanne;
- Taddei, Carla Romano;
- Kristiansen, Karsten;
- Saad, Susana Marta Isay
Publication type:
Article
Co-localization of antibiotic resistance genes is widespread in the infant gut microbiome and associates with an immature gut microbial composition.
Published in:
Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01800-5
By:
- Li, Xuanji;
- Brejnrod, Asker;
- Trivedi, Urvish;
- Russel, Jakob;
- Thorsen, Jonathan;
- Shah, Shiraz A;
- Vestergaard, Gisle Alberg;
- Rasmussen, Morten Arendt;
- Nesme, Joseph;
- Bisgaard, Hans;
- Stokholm, Jakob;
- Sørensen, Søren Johannes
Publication type:
Article
Community-intrinsic properties enhance keratin degradation from bacterial consortia.
Published in:
PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0228108
By:
- Nasipuri, Poonam;
- Herschend, Jakob;
- Brejnrod, Asker D.;
- Madsen, Jonas S.;
- Espersen, Roall;
- Svensson, Birte;
- Burmølle, Mette;
- Jacquiod, Samuel;
- Sørensen, Søren J.
Publication type:
Article
Papio spp. Colon microbiome and its link to obesity in pregnancy.
Published in:
Journal of Medical Primatology, 2018, v. 47, n. 6, p. 393, doi. 10.1111/jmp.12366
By:
- Li, XuanJi;
- Rensing, Christopher;
- Taylor, William L.;
- Costelle, Caitlin;
- Brejnrod, Asker Daniel;
- Ferry, Robert J.;
- Higgins, Paul B.;
- Folli, Franco;
- Kottapalli, Kameswara Rao;
- Hubbard, Gene B.;
- Dick, Edward J.;
- Yooseph, Shibu;
- Nelson, Karen E.;
- Schlabritz‐Loutsevitch, Natalia
Publication type:
Article
Stability and resilience of the intestinal microbiota in children in daycare – a 12 month cohort study.
Published in:
BMC Microbiology, 2018, v. 18, n. 1, p. 1, doi. 10.1186/s12866-018-1367-5
By:
- Mortensen, Martin Steen;
- Jensen, Betina Hebbelstrup;
- Williams, Jeanne;
- Brejnrod, Asker Daniel;
- Andersen, Lee O’Brien;
- Röser, Dennis;
- Andreassen, Bente Utoft;
- Petersen, Andreas Munk;
- Stensvold, Christen Rune;
- Sørensen, Søren Johannes;
- Krogfelt, Karen Angeliki
Publication type:
Article
Legacy Effects on the Recovery of Soil Bacterial Communities from Extreme Temperature Perturbation.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01832
By:
- Jurburg, Stephanie D.;
- Nunes, Inês;
- Brejnrod, Asker;
- Jacquiod, Samuel;
- Priemé, Anders;
- Sørensen, Søren J.;
- Van Elsas, Jan Dirk;
- Salles, Joana F.
Publication type:
Article
Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages.
Published in:
Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0606-1
By:
- Jacquiod, Samuel;
- Nunes, Inês;
- Brejnrod, Asker;
- Hansen, Martin A.;
- Holm, Peter E.;
- Johansen, Anders;
- Brandt, Kristian K.;
- Priemé, Anders;
- Sørensen, Søren J.
Publication type:
Article
Publisher Correction: Maturation of the gut microbiome and risk of asthma in childhood.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03150-x
By:
- Stokholm, Jakob;
- Blaser, Martin J.;
- Thorsen, Jonathan;
- Rasmussen, Morten A.;
- Waage, Johannes;
- Vinding, Rebecca K.;
- Schoos, Ann-Marie M.;
- Kunøe, Asja;
- Fink, Nadia R.;
- Chawes, Bo L.;
- Bønnelykke, Klaus;
- Brejnrod, Asker D.;
- Mortensen, Martin S.;
- Al-Soud, Waleed Abu;
- Sørensen, Søren J.;
- Bisgaard, Hans
Publication type:
Article
Maturation of the gut microbiome and risk of asthma in childhood.
Published in:
Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-017-02573-2
By:
- Stokholm, Jakob;
- Blaser, Martin J.;
- Thorsen, Jonathan;
- Rasmussen, Morten A.;
- Waage, Johannes;
- Vinding, Rebecca K.;
- Schoos, Ann-Marie M.;
- Kunøe, Asja;
- Fink, Nadia R.;
- Chawes, Bo L.;
- Bønnelykke, Klaus;
- Brejnrod, Asker D.;
- Mortensen, Martin S.;
- Al-Soud, Waleed Abu;
- Sørensen, Søren J.;
- Bisgaard, Hans
Publication type:
Article
Identification of representative species-specific genes for abundance measurements.
Published in:
Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad060
By:
- Zachariasen, Trine;
- Petersen, Anders Østergaard;
- Brejnrod, Asker;
- Vestergaard, Gisle Alberg;
- Eklund, Aron;
- Nielsen, Henrik Bjørn
Publication type:
Article
MAGinator enables accurate profiling of de novo MAGs with strain-level phylogenies.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49958-8
By:
- Zachariasen, Trine;
- Russel, Jakob;
- Petersen, Charisse;
- Vestergaard, Gisle A.;
- Shah, Shiraz;
- Atienza Lopez, Pablo;
- Passali, Moschoula;
- Turvey, Stuart E.;
- Sørensen, Søren J.;
- Lund, Ole;
- Stokholm, Jakob;
- Brejnrod, Asker;
- Thorsen, Jonathan
Publication type:
Article
Delivery mode and gut microbial changes correlate with an increased risk of childhood asthma.
Published in:
Science Translational Medicine, 2020, v. 12, n. 569, p. 1, doi. 10.1126/scitranslmed.aax9929
By:
- Stokholm, Jakob;
- Thorsen, Jonathan;
- Blaser, Martin J.;
- Rasmussen, Morten A.;
- Hjelmsø, Mathis;
- Shah, Shiraz;
- Christensen, Emil D.;
- Chawes, Bo L.;
- Bønnelykke, Klaus;
- Brix, Susanne;
- Mortensen, Martin S.;
- Brejnrod, Asker;
- Vestergaard, Gisle;
- Trivedi, Urvish;
- Sørensen, Søren J.;
- Bisgaard, Hans
Publication type:
Article
Genetic barcoding of dark‐spored myxomycetes (Amoebozoa)—Identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies.
Published in:
Molecular Ecology Resources, 2018, v. 18, n. 2, p. 306, doi. 10.1111/1755-0998.12725
By:
- Borg Dahl, Mathilde;
- Brejnrod, Asker D.;
- Unterseher, Martin;
- Hoppe, Thomas;
- Feng, Yun;
- Novozhilov, Yuri;
- Sørensen, Søren J.;
- Schnittler, Martin
Publication type:
Article
The Effect of Lean‐Seafood and Non‐Seafood Diets on Fecal Metabolites and Gut Microbiome: Results from a Randomized Crossover Intervention Study.
Published in:
Molecular Nutrition & Food Research, 2019, v. 63, n. 1, p. N.PAG, doi. 10.1002/mnfr.201700976
By:
- Schmedes, Mette;
- Brejnrod, Asker Daniel;
- Aadland, Eli Kristin;
- Kiilerich, Pia;
- Kristiansen, Karsten;
- Jacques, Hélène;
- Lavigne, Charles;
- Graff, Ingvild Eide;
- Eng, Øyvin;
- Holthe, Asle;
- Mellgren, Gunnar;
- Young, Jette Feveile;
- Sundekilde, Ulrik Kræmer;
- Liaset, Bjørn;
- Bertram, Hanne Christine
Publication type:
Article
A safflower oil based high-fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation.
Published in:
Molecular Nutrition & Food Research, 2017, v. 61, n. 5, p. n/a, doi. 10.1002/mnfr.201600528
By:
- Danneskiold‐Samsøe, Niels Banhos;
- Andersen, Daniel;
- Radulescu, Ilinca Daria;
- Normann‐Hansen, Ann;
- Brejnrod, Asker;
- Kragh, Marie;
- Madsen, Tobias;
- Nielsen, Christian;
- Josefsen, Knud;
- Fretté, Xavier;
- Fjære, Even;
- Madsen, Lise;
- Hellgren, Lars I.;
- Brix, Susanne;
- Kristiansen, Karsten
Publication type:
Article
Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14308-x
By:
- Hjelmsø, Mathis H.;
- Shah, Shiraz A.;
- Thorsen, Jonathan;
- Rasmussen, Morten;
- Vestergaard, Gisle;
- Mortensen, Martin S.;
- Brejnrod, Asker;
- Brix, Susanne;
- Chawes, Bo;
- Bønnelykke, Klaus;
- Sørensen, Søren J.;
- Stokholm, Jakob;
- Bisgaard, Hans
Publication type:
Article
Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age.
Published in:
Nutrients, 2020, v. 12, n. 4, p. 1081, doi. 10.3390/nu12041081
By:
- Padilha, Marina;
- Brejnrod, Asker;
- Danneskiold-Samsøe, Niels Banhos;
- Hoffmann, Christian;
- Iaucci, Julia de Melo;
- Cabral, Vanessa Pereira;
- Xavier-Santos, Douglas;
- Taddei, Carla Romano;
- Kristiansen, Karsten;
- Saad, Susana Marta Isay
Publication type:
Article
Community structure of the metabolically active rumen bacterial and archaeal communities of dairy cows over the transition period.
Published in:
PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0187858
By:
- Zhu, Zhigang;
- Noel, Samantha Joan;
- Difford, Gareth Frank;
- Al-Soud, Waleed Abu;
- Brejnrod, Asker;
- Sørensen, Søren Johannes;
- Lassen, Jan;
- Løvendahl, Peter;
- Højberg, Ole
Publication type:
Article

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