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EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments.
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- Plant Cell, 2016, v. 28, n. 10, p. 2365, doi. 10.1105/tpc.16.00158
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- Article
Fungi stabilize connectivity in the lung and skin microbial ecosystems.
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- Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-017-0393-0
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- Article
Computational Design of Phosphotriesterase Improves V‐Agent Degradation Efficiency.
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- ChemistryOpen, 2024, v. 13, n. 7, p. 1, doi. 10.1002/open.202300263
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- Article
Liberal and Conservative Values: What We Can Learn From Congressional Tweets.
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- Political Psychology, 2018, v. 39, n. 2, p. 423, doi. 10.1111/pops.12415
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- Article
How Social Media Facilitates Political Protest: Information, Motivation, and Social Networks.
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- Political Psychology, 2018, v. 39, p. 85, doi. 10.1111/pops.12478
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- Article
Sequence-structure-function relationships in the microbial protein universe.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37896-w
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- Article
Exposure to the Russian Internet Research Agency foreign influence campaign on Twitter in the 2016 US election and its relationship to attitudes and voting behavior.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-022-35576-9
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- Article
Computational-guided determination of the functional role of 447-52D long CDRH3.
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- PEDS: Protein Engineering, Design & Selection, 2018, v. 31, n. 12, p. 479, doi. 10.1093/protein/gzz007
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- Article
adaptive geometric search algorithm for macromolecular scaffold selection.
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- PEDS: Protein Engineering, Design & Selection, 2018, v. 31, n. 9, p. 345, doi. 10.1093/protein/gzy028
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- Article
Biophysically Motivated Regulatory Network Inference: Progress and Prospects.
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- Human Heredity, 2017, v. 81, n. 2, p. 62, doi. 10.1159/000446614
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- Article
For Whom the Bot Tolls: A Neural Networks Approach to Measuring Political Orientation of Twitter Bots in Russia.
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- SAGE Open, 2019, v. 9, n. 2, p. N.PAG, doi. 10.1177/2158244019827715
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- Article
A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00531-6
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- Article
Viewing the US presidential electoral map through the lens of public health.
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- PLoS ONE, 2021, v. 16, n. 7, p. 1, doi. 10.1371/journal.pone.0254001
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- Article
BioNetBuilder2.0: bringing systems biology to chicken and other model organisms.
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- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S6
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- Article
SlrA/SinR/SlrR inhibits motility gene expression upstream of a hypersensitive and hysteretic switch at the level of σ<sup>D</sup> in Bacillus subtilis.
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- Molecular Microbiology, 2012, v. 83, n. 6, p. 1210, doi. 10.1111/j.1365-2958.2012.08003.x
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- Article
The coat morphogenetic protein SpoVID is necessary for spore encasement in Bacillus subtilis.
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- Molecular Microbiology, 2009, v. 74, n. 3, p. 634, doi. 10.1111/j.1365-2958.2009.06886.x
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- Article
Contact order and ab initio protein structure prediction.
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- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 8, p. 1937, doi. 10.1110/ps.3790102
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- Article
Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP.
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- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1541-z
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- Article
Fused Regression for Multi-source Gene Regulatory Network Inference.
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- PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005157
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- Article
4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments.
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- PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004780
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- Article
Interleukin‐17 Inhibition in Spondyloarthritis Is Associated With Subclinical Gut Microbiome Perturbations and a Distinctive Interleukin‐25–Driven Intestinal Inflammation.
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- Arthritis & Rheumatology, 2020, v. 72, n. 4, p. 645, doi. 10.1002/art.41169
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- Article
Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.51254
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- Article
Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.08411
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- Article
Design of Peptoid-peptide Macrocycles to Inhibit the β-catenin TCF Interaction in Prostate Cancer.
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- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-06845-3
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- Article
Molecular network analysis of phosphotyrosine and lipid metabolism in hepatic PTP1b deletion mice.
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- Integrative Biology, 2013, v. 5, n. 7, p. 940, doi. 10.1039/c3ib40013a
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- Article
Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota.
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- PLoS Neglected Tropical Diseases, 2014, v. 8, n. 5, p. 1, doi. 10.1371/journal.pntd.0002880
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- Article
Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota.
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- PLoS Neglected Tropical Diseases, 2014, v. 8, n. 5, p. 1, doi. 10.1371/journal.pntd.0002880
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- Article
The Gaggle: An open-source software system for integrating bioinformatics software and data sources.
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- BMC Bioinformatics, 2006, v. 7, p. 176, doi. 10.1186/1471-2105-7-176
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- Article
Sparse and Compositionally Robust Inference of Microbial Ecological Networks.
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- PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004226
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- Article
Negative Example Selection for Protein Function Prediction: The NoGO Database.
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- PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003644
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- Article
Comparative Microbial Modules Resource: Generation and Visualization of Multi-species Biclusters.
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- PLoS Computational Biology, 2011, v. 7, n. 12, p. 1, doi. 10.1371/journal.pcbi.1002228
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- Article
Tweeting Beyond Tahrir: Ideological Diversity and Political Intolerance in Egyptian Twitter Networks.
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- World Politics, 2021, v. 73, n. 2, p. 243, doi. 10.1017/S0043887120000295
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- Article
Conformational Preferences of Peptide-Peptoid Hybrid Oligomers.
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- Biopolymers, 2014, v. 102, n. 5, p. 369, doi. 10.1002/bip.22516
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- Article
Oligo( N-alkoxy glycines): Trans substantiating peptoid conformations.
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- Biopolymers, 2011, v. 96, n. 5, p. 617, doi. 10.1002/bip.21675
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- Article
NetTIME: a multitask and base-pair resolution framework for improved transcription factor binding site prediction.
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- Bioinformatics, 2022, v. 38, n. 20, p. 4762, doi. 10.1093/bioinformatics/btac569
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- Article
High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2519, doi. 10.1093/bioinformatics/btac117
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- Article
convolutional neural network for common coordinate registration of high-resolution histology images.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4216, doi. 10.1093/bioinformatics/btab447
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- Article
NetQuilt: deep multispecies network-based protein function prediction using homology-informed network similarity.
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- Bioinformatics, 2021, v. 37, n. 16, p. 2414, doi. 10.1093/bioinformatics/btab098
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- Article
Towards region-specific propagation of protein functions.
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- Bioinformatics, 2019, v. 35, n. 10, p. 1737, doi. 10.1093/bioinformatics/bty834
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- Article
deepNF: deep network fusion for protein function prediction.
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- Bioinformatics, 2018, v. 34, n. 22, p. 3873, doi. 10.1093/bioinformatics/bty440
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- Article
Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection.
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- Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00803-2
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- Article
Author Correction: OutPredict: multiple datasets can improve prediction of expression and inference of causality.
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- 2020
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- Correction Notice
OutPredict: multiple datasets can improve prediction of expression and inference of causality.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-63347-3
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- Article
Masked graph modeling for molecule generation.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23415-2
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- Article
Structure-based protein function prediction using graph convolutional networks.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23303-9
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- Article
Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate.
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- Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1598-7
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- Article
Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design.
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- PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0067051
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- Article
Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)
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- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063906
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- Article
Incorporation of Noncanonical Amino Acids into Rosetta and Use in Computational Protein-Peptide Interface Design.
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- PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032637
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- Article
Rational Design of Temperature-Sensitive Alleles Using Computational Structure Prediction.
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- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0023947
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- Article